Basic Information

Insect: Condylostylus longicornis
Gene Symbol: -
Assembly: GCA_029603195.2
Location: JAQSLO010000049.1:6613665-6618094[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0013 0.14 13.3 0.3 2 19 538 555 537 560 0.92

2 8 0.027 2.9 9.2 4.6 3 23 575 596 573 596 0.92

3 8 7.9e-05 0.0086 17.2 1.5 1 23 617 639 617 639 0.97

4 8 7.3e-05 0.0079 17.3 0.7 1 23 645 667 645 667 0.98

5 8 1.4e-05 0.0015 19.6 0.8 1 23 673 695 673 695 0.98

6 8 0.00098 0.11 13.7 4.7 2 23 702 723 702 723 0.98

7 8 1.5e-05 0.0017 19.4 2.4 1 23 729 751 729 751 0.97

8 8 0.036 3.9 8.8 5.3 1 23 757 780 757 780 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0013	0.14	13.3	0.3	2	19	538	555	537	560	0.92
2	8	0.027	2.9	9.2	4.6	3	23	575	596	573	596	0.92
3	8	7.9e-05	0.0086	17.2	1.5	1	23	617	639	617	639	0.97
4	8	7.3e-05	0.0079	17.3	0.7	1	23	645	667	645	667	0.98
5	8	1.4e-05	0.0015	19.6	0.8	1	23	673	695	673	695	0.98
6	8	0.00098	0.11	13.7	4.7	2	23	702	723	702	723	0.98
7	8	1.5e-05	0.0017	19.4	2.4	1	23	729	751	729	751	0.97
8	8	0.036	3.9	8.8	5.3	1	23	757	780	757	780	0.97

Sequence Information

Coding Sequence: ATGGATAGTTTGAAAAGAGCCAATGATTGCTGTTTATTAAAGGAAAGTGTAAACGCAATACAAgaacacataaaattaaaacattctaAACAAACAAATTTGGATAATTCAACTGtccctttaaatttaattcaatataaaacctTAATACCTGGAAATCCTATAGTTCCAGTATCACCGCCACCAGCAGCTCACTTGCCAGCTCCAACTCTTCTCATGCCTACTCCCTTAATTTCATTGCCAGTACCTTTACAACCTAATCCAATGTATAACACATGCGTGCCCATGCCTGCAAATATAGTTCAGCTTAAAAGCATGCAGCATATAAATTTACCTGAATCATTTTTAAAGGATTATGCTTCTATTGAAccatttaataagaaaatttctgaaGTAAAACTAATTGTTGAGAAAGTAAGGATTCAACTAAATAAGCATTTAAAAAGTTCTATGCTGCCTATAAAAGTCTTTTTGTATGGATCAAGAGCATTTGGGCTAGGATATCATgattcaaattacaattttaatgttgaaatataCAAGGATAAAGACAAGAAAGTAAGTTCAATAGAGAAAGTGAAAATGGTTTCTGATTGTTTACAAAAACACTTAAGTGTTTGGCGCACAATGCGGCAAAATCGAAAAGATGAAATTCCATGGACTGAGCTTAAGAATATAGATTTAAATATCGTATGTAAGCTCACTTTTGAAAATGATGCAATTTACCGGGTACAAGTGGACTTAATAAATTACTATTTGGAGATTCCAATAATAAGACGAGTTGCAACTTTGGTGAAAATCGTGTTACATAATTACAAGATAAAGATAAatagttatatattattaatattagtgaTTTTCTTCTATCAAAAAAAATCAGTTCTACCACCAGTATTTGCATTGCAGTCAAGATGCGCACCAGAGTTTCAGGGAGCTTGGcaggttaattttaataaggatGTAAATCTCTTACATTCTTACGCTCAGTTTCCACCGGATAATCCAACAAATTGCTTTATTGATTTCaaatctttttgtttattttaccttagttttgattttaaaaaaaatattataagtccTTTAGTtggcaatatttttcaaagagaTAAGCTCGCCCTAACGCAACAGCTAAGTAAACATGTTAACTACACAAATTTACTTAAGTACTCTCCAATGGCCATACAGGATCCAATAGTACAAAATGTTAACTTAGCAGCAAATATAACAGAAGAAAATCTGAAAGAATTTAAGAAAGTTTTAGAAAAGTACAATCTTAGCGTAGATCAAACAATTTTAGTTATAAGACAAATTTTATCTGATGATGAAGATTCTGAAGCTTGGGACGAAAATAATGACAAACTTAACTTTGAATTAGAGGGCGAAACAACACAGGAGGATTTTAGAAGTGATGAATTAGATACATCACGGGaagatgttttaaaaaataattcggaATTCTATGAAAACAATGGCGATGAAAGAAATACAAATgatgttgaagaaaaaaaaaataaagctagtaataaagtaaaaaattcaaaacgtaAAACAGATGTTAATCAAATTATAGGATCAGACTTCCCGGAcgataatgaaagaaaaaagtgGATTTGTAGTGTGTGCAACACCCCGTTTACTAGGCGGGATAATATGCTTCGACATAAATGGAAAATTCACAAGgaaaaaccGAATCCTGATTATGGAGAAATTCGTTTAGATTGTAAATGGTGTGGACAACATTTTAAAAGACATTCAGACAGATCAAGGCATGAAAATCAGCAGCATGACGCAGATGGTGCTAAAATTAATCGCAGAAGAAACTATAAAGAGAATCCTTTAGAAAGACATGTCTGTGAGACATGCGGAAATTCTTATAAACACGCTTGGAGTCTGCAGGAACATTTAAGAATTCATACAGGGGAAAGACCTTTTGTATGCGATTTGTGCAATGCAACATTTGCTAAAAGGCAAAACTTTATAGTACACATGAAATATCATTCGAACGAACGCCGTTTTAAATGCCAATATTGTGATAAAGGCTTtgtgcaaaaaacaaaattaattttacatgaaatGGTACATACTGGAACATATAAAGCCCAATGCACTATTTGCGGAAAACAGTTCCGATGTCGTTCCcgtttaaatgtacatatgaaaagGCATATATACGATAAGTGCCATAAATGCGATCAGTGTGAAAAAagaTTTTATACAGCCGATTCTTTAAAAAGACATACAGCTATTCACTCTGATAAAAAGCCATTCCGTTGTGAAATTTGTTTTGCAGAgtattttacaaaatgttccTTACAAAAGCATACAAAACGAAGACACAAAGCATCTCAACCACCAGACCTTCCCATAGCTAATACGGAAAATCCTATGAACTAG
Protein Sequence: MDSLKRANDCCLLKESVNAIQEHIKLKHSKQTNLDNSTVPLNLIQYKTLIPGNPIVPVSPPPAAHLPAPTLLMPTPLISLPVPLQPNPMYNTCVPMPANIVQLKSMQHINLPESFLKDYASIEPFNKKISEVKLIVEKVRIQLNKHLKSSMLPIKVFLYGSRAFGLGYHDSNYNFNVEIYKDKDKKVSSIEKVKMVSDCLQKHLSVWRTMRQNRKDEIPWTELKNIDLNIVCKLTFENDAIYRVQVDLINYYLEIPIIRRVATLVKIVLHNYKIKINSYILLILVIFFYQKKSVLPPVFALQSRCAPEFQGAWQVNFNKDVNLLHSYAQFPPDNPTNCFIDFKSFCLFYLSFDFKKNIISPLVGNIFQRDKLALTQQLSKHVNYTNLLKYSPMAIQDPIVQNVNLAANITEENLKEFKKVLEKYNLSVDQTILVIRQILSDDEDSEAWDENNDKLNFELEGETTQEDFRSDELDTSREDVLKNNSEFYENNGDERNTNDVEEKKNKASNKVKNSKRKTDVNQIIGSDFPDDNERKKWICSVCNTPFTRRDNMLRHKWKIHKEKPNPDYGEIRLDCKWCGQHFKRHSDRSRHENQQHDADGAKINRRRNYKENPLERHVCETCGNSYKHAWSLQEHLRIHTGERPFVCDLCNATFAKRQNFIVHMKYHSNERRFKCQYCDKGFVQKTKLILHEMVHTGTYKAQCTICGKQFRCRSRLNVHMKRHIYDKCHKCDQCEKRFYTADSLKRHTAIHSDKKPFRCEICFAEYFTKCSLQKHTKRRHKASQPPDLPIANTENPMN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -