Clon004223.1
Basic Information
- Insect
- Condylostylus longicornis
- Gene Symbol
- ZFX
- Assembly
- GCA_029603195.2
- Location
- JAQSLO010000013.1:12327169-12328763[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.028 3.1 9.1 4.9 1 21 205 225 205 226 0.94 2 10 0.00032 0.035 15.2 3.8 3 23 234 255 230 255 0.93 3 10 0.00011 0.012 16.7 0.9 2 23 267 288 266 288 0.96 4 10 0.083 9 7.7 1.8 3 23 294 315 292 315 0.82 5 10 0.00011 0.012 16.7 3.4 1 23 321 344 321 344 0.96 6 10 0.16 17 6.8 0.3 1 23 350 374 350 374 0.94 7 10 0.0042 0.46 11.7 5.4 1 23 380 403 380 403 0.96 8 10 0.00034 0.036 15.2 1.9 1 23 411 433 411 433 0.97 9 10 0.017 1.8 9.9 0.8 1 23 439 461 439 461 0.97 10 10 9.4e-06 0.001 20.1 0.2 1 23 467 489 467 489 0.97
Sequence Information
- Coding Sequence
- ATGTGCCATCGTGATTTTGAAAGTATTGTAGTTTTTTCGAACCATATTTTAGTTGATCACTTAGAGCTGGGATACTTAAGTGAATTATCCGaatataaagataataaaaCAGATATGTTTCAAAGAAGTATGAGTGAAGAATGTCAAGTTGGAGAAGAAGATACTTTAAATCTTAGTGGgaataacgaaaaatttaaagagtctTGTAAAAGCCTCCGAAGTCACGAAAGCAGTTTTGAATTTCTCAAAAGTGAAATTGAACCCTTAGAAGAAATACAATCAATTCCTATGATTTCTAAGCTGGTagatgaaaatattaacaaaaaatctatttataataaaattaatgggaCGTGTGGtatttatgaaaagaattttacgAATGAAGATAACTTGAAaacttataaagaaaattatcagACTAAATTCGCGAATTCTTCCAAACAgagaaatttcattaacaaaacTCACTCTTTAGAGGAGTCTGAACTAAAACAACctcatttaatgttaaatacagACGacgaaaaagttttaaatttgcaaGAAAATCACACATTCGAAAAAGGAATCAGTGAGAATACAAGTAGTTATTTGGAAATACCTCAAATATATAACTGCAAACATTGCTGCAGGAATTTCAGTAATGAAAGTTTATTGGAAAAGCACAAAAAGGACAGTAAAGGGAAATgtaatttttgcgaattttgttctaaaaaattttcgtcaAGAAAAAATTACGAGATCCATATGAACTATGctcatgaaaaatttgttaatggaaaagataaattaaagaaatgcaGCTATTGCcccaaagtttttcaaaaattgattaatcTTGAAAAACATGAAGAACGtcataagaaaattcaaatatgcgAGTATTgcggaaaattatttgaaaaccaAAAAGCAAAATATCAACAGCATTTGAGGTCGCATACTGGAGagaaACCGTTTGCGTGTCCAATATGTTCAAATGCGTTTACAACTCGTGGAAACTTAAATCATCACAAATCTACATGTCATTCTGATGAAAGACCTTTTATATGTACTTGGCCAAATTGTGAAAAGGGATTTAAAAAAGATCGGCAACGAGTTTGGCACGAGCGTATTCACACGGGTGAAAAGCCTTATCAGTGTGAACAGTGCGGGGAACATTTTGCTTTCCAGCACAAATTAAGTttgcataaaaaacaaaaacatatggATAAGAAAGACCGTCCCCATAAATGCGATCAGTGCGAAAAAGCCTTCGTGTTACCAAGACAATTAAGAGAACATAAATATACTCATACTGGAGAAAAACCACATGAATGTGATATGTGCCTGGCAAGGTTCGCTAAACGTGGAGGACTTACTGAacacaaaaaattgcatactggAGAAAAGAAGCACGTATGTGAAATATGCGGGAGAGCTTTTGCCCAAAGGGCCGGTTATGCAACGCACATCAAGTcgcataatttcatttaa
- Protein Sequence
- MCHRDFESIVVFSNHILVDHLELGYLSELSEYKDNKTDMFQRSMSEECQVGEEDTLNLSGNNEKFKESCKSLRSHESSFEFLKSEIEPLEEIQSIPMISKLVDENINKKSIYNKINGTCGIYEKNFTNEDNLKTYKENYQTKFANSSKQRNFINKTHSLEESELKQPHLMLNTDDEKVLNLQENHTFEKGISENTSSYLEIPQIYNCKHCCRNFSNESLLEKHKKDSKGKCNFCEFCSKKFSSRKNYEIHMNYAHEKFVNGKDKLKKCSYCPKVFQKLINLEKHEERHKKIQICEYCGKLFENQKAKYQQHLRSHTGEKPFACPICSNAFTTRGNLNHHKSTCHSDERPFICTWPNCEKGFKKDRQRVWHERIHTGEKPYQCEQCGEHFAFQHKLSLHKKQKHMDKKDRPHKCDQCEKAFVLPRQLREHKYTHTGEKPHECDMCLARFAKRGGLTEHKKLHTGEKKHVCEICGRAFAQRAGYATHIKSHNFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -