Clon006721.1
Basic Information
- Insect
- Condylostylus longicornis
- Gene Symbol
- -
- Assembly
- GCA_029603195.2
- Location
- JAQSLO010000026.1:2131114-2137045[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0057 0.61 11.3 2.4 1 23 1335 1358 1335 1358 0.96 2 12 5.1 5.5e+02 2.0 1.5 1 23 1515 1537 1515 1537 0.93 3 12 0.0001 0.011 16.8 2.0 2 23 1540 1561 1540 1561 0.97 4 12 0.00016 0.018 16.2 0.2 3 23 1569 1589 1567 1589 0.98 5 12 6.4e-05 0.0069 17.5 4.9 2 23 1596 1618 1595 1618 0.95 6 12 2.3 2.5e+02 3.1 0.1 5 23 1631 1649 1629 1649 0.96 7 12 0.1 11 7.4 0.1 2 23 1688 1708 1688 1708 0.96 8 12 5.9e-05 0.0063 17.6 0.7 1 19 1714 1732 1714 1736 0.95 9 12 5e-05 0.0054 17.8 1.9 1 23 1744 1766 1744 1766 0.98 10 12 0.00016 0.017 16.2 7.4 1 23 1772 1794 1772 1795 0.96 11 12 0.0019 0.21 12.8 4.5 1 23 1800 1822 1800 1822 0.98 12 12 0.013 1.5 10.2 5.6 1 23 1828 1850 1828 1851 0.93
Sequence Information
- Coding Sequence
- ATGATGGATTTGGTTGCATGTCCGGTTTGTACCTTGTATTTGCATAAGGGAATGAGTTTGGCTGAACATTTGGAAACTCATCCTAAAGAACAAGTAATAAAAGCTTTGGTATCTCTGGCTACAGGATCCTTGTCATCTGGTgacattttaacaaataatgttACTAATAAAACGACAACGCCTGTTGCACCATCTACAGCCACATCTTCCGCAAACTATGAAAACTTTCAATCTGCCAATACAGTTTTGCATAGTagtaataatttgcaaatacGTTCACCTAGTAATGGCAATAGCTCAAGTCCTTCATCTTCGTTAAACAATTTTACTACGAGTTCCAACTTTAGCTCTAACATTCAAACTACACCTGTTATTTCAACATCTTTTAACGACGTCGCATCAAGCAGGGTGCACAGTAATGCATCTAGTTTGAATTATAAATCTAATTCAGCGTATAGTTCAGGATATCAAGTGCAGGAAACACATGGGTTACAGGCAAATAGTAATATGGGAAACCAAAGTAGCTCAATAAATTTCCCTTCCCACTTGCAacatttatttaactctaaaacaaaacaattgcCGCCTCCACCAGAATATAGACAAGCAATAAGCCAGTTACGatctcaaaattttgcacgtacAAATACTACAAAATCTTTAGCAAATTTATCAttgaatagtaataataacagtaacaattGTAATGCAATTAacactaattttaataacagtaataataatagtaacgaTAATAGCTATCAAATATCAAGTAACTCATCTACTTCGTACTCAATAGTTAACCAACAGACTACTAACTTCTATACTAACACCAACAATTATCAAGAAACATTAGACTTTTCATTACCAAAGCAACATCATCAATCATCAACAGTGAATAATTCATCTTTACCTGCGCCACCATACAACTCATCATCACATTTAAAACGTGGTCAAAACAGTGACATTTCCACAAGTAACGGGCCCTGTTTTGAATTTTCCACATATTCTCAACCTTTAGATTGTCAGACCACTTTAAATGAGGAAGTTGTTAAATTTCCAAAAGGTGTCAATTTGGAAAAGGAAGTTAATAATCCTAGATCCCCATCGCCCATTTGTTTGATTACATCAATTCGCTCATCTGAAAACAGTTTAAATGAATCACATCAAGCAAGCAAATCTCAATCGCATTCTTCTTCAGTATTACGTTTTGCTGATACTCCACCTGCTGCACAATATATAGAAAGAGATTCTGGTGATTTTCTAGTTCAAGAATCACCACGTCATATAGTAGAGTGTATTGAAAAAGATAATGGGGAATTTTCTGTTATTGAAAAGGTTATACAATCACCACCAAGTATTGTATCTGTAAATGAACATATATTAGAAGAAAATGCTCAAATGAACAATGAAAAACAAGAAGCTGACGATGATATTCATGAAGAAGTAAGTGAAGAACATGGTTGTGATGATAAAAACAATGAGctgtcaaaaaataataaaagtgctaaattttctgaaaatgatATCAAAACTGAGAGTTCGGAAAACTTTGAAAATGAAAACGCAGATTTAATTGAACACAAAAAcgaatcaaaaaataatgagGGAAATGAGCAACGTTTAAATTCTTCAAAACGAAAACTTATCTCTAAAGGTGTGAAAGTTTTAAGCAATGTAAAATTAGATGCGAATAAATCTCTTGAAATAGttgaaaatatccaaaaatgTAGCACTGAAGAGTTTTGGACGGGAATagttaatacaattaaaaaagaagattCAGATAAATCGTATAGCTGTAATTCCTTACCCTCAACAAGCGCAAGCAGTGAGGTAGATGAAGTAGAAGAACTAAATaacttaaatgataaaaaaactgCTCAAAAATGTACCTCAACTAATTTATCAGTGGAAAACGCAACGAAAATAATTGCAACAAGTGTGATTCGTTTAGCAGTAAAccaaaaacaattagaatccaAAATACCATCTTCAAGCAAAAAATCAAAGAGTCCCAAAAGGGAAAAAGATTTAAACGAAAAATCTCAAATTGAAAATGAACCAATAGCATCGTGTTCTTCTCAGAGTCGATTGCAAAATTCATGTGTGAAGAAAAATGTTTACAGAAAAAACCCTAAAAAAttgatagtaaaatttaaaaatcctttaCCTCCCGTTACACCTTCGCCAATTTCATTCGTTAAAGAAGGCGAGTCGCAAGAAATTATAGACATAACGGAAAATGAGTCTATTGAGAATGATTCTGTTAAGCCAGAAGATTCAATATTAATACCAAGTATAAACAAAGGAATGAAGCAGAAAAATATAGATGACTCTGATGAAACTACTCTTAATAATATGATGGAGCAAATAGTAAACGAAGACGACATATCATTTGGCGCACCTGGACTGGAGAACGAGGTCAATACCTGTGAAACAGTTGAAAAAAATCtaacagaaaatttcaatttgaaaatagaaaaagaaccAGATTTTGCTGATATTGGGAAACCAATGCAAATACAAGATGCTACAAAAATTCCGTCTGCATCACCTTCAACTTCATCATTAGGGTTATCGTCATCATATTCATCTCCTTCTTCCTCATCGCCTTTATCAGTTTCTAATCAAGAAATTGGaagtttaaatgatttaaaaataatacaaaatgatgAGTTTTGTGAcgaagacaaaaattttatgtctatCAAAACTAATAATTGTAGTGTGGAAAATGAATCCCgaaatgttaatgaaaaaaaaagtgatttaagTTTCACTACAAGCAATATTACAAAAACGGTTTTCATTATTGAGGAAATAGATGATGATAGACAATGTGACAGGAAGGTAGCCGTTCAGCAAACAAATCAAATTCCTggacaatttttgaataatgagTTTCAAACAGTCAGCTGCGGTTTGTCAACAGGAAAAACCCCAGAATCATTCACATCAGATCATCAACCAAATAAACAACAAATACAGCAGCAAATTGAACACGCTGAATTAGTTattgatatacaaaataatcaaagCAACACACAACAGAATACATATTGCGATTATCCATTCAGTTTTTTGTACTCTGCCTCGTCAACTGTAATACCTAATAcagcaaatttgaatttttcaagtgGTGCATTTACTTcaggTGCAACTACTAATCAAAACAACAACAGTGAacacgaaattatttttaactcgaACAGTTCTAGTAATAGTAACATGATTGATAAAACAACAAATTCTCTCACATCAGCTTCATCTTCGATCTCTGTTTACTCAAAAACAGGTGTTAATGATGATAACGCTGTTAATGGtggtattcaaatttttaatcgtTATGTAGGTCCTACCATATTTACTTCGCGCGAGGATAATGAATCAGAGGAAAAAAACAGTTACTTAGATTTAGATCTATGTACCAAGCATACTGAAAATAATGATGGAGAAACTCGAAATAATGGGAGCAGTACAGCAAATGGAATTCTTAACATAAACACTGTTACATCAATTAGTACTCATAACAGTAGAGATAATTTAATTACAGAATTAAATATACGAACGGATGAAAAAATGCCTGCTAAAGGAGAGATTTCTGAGCAAGAAAGTAATGGTGACATTGATAACTCATGGAGTCAACCtatttataatgAATTGACATACAAATATTCTAATCCTTATGACGTAAGTCATGAAAGTTGGAGCCTAAGTCATGATGAATTCTTTAATCCAcatgatttaaataatatccgATCTAAAGTgacCACAAATTCAGACATAGAAAAAGATATTAAGCCTATTTTGCCAGGAACATCAACAGAATGTGTTAACGAGCCTGCCggatctaaaaaaataaaaaaacgaaaaaaagcgCCAACATTGTTTTCAGCTACCACGACAATTTTAGATAcggttaatttaaataataatgcagCTTCATCATCTTTGGAAAATGGTCAAATATCCGGAGCAATAATAACCAAAAAGAAAGCTTATCAATGTGACCATTGTTCTGTAGTATTCGTACGATTAAAAGATAGAAATCATCATATGGTTTCAATACATCAATATAAAAGAGTTAATCGTCGTCTGATTCGGGAAGCACCATCATCTACCGTTACATCTGCTACTATAAATAACATCGTAAGTATTACAGATCAGCAAAGCGACAATGTTAATTTAGCTGTCGATAATGATACAAAGCCAGACGTCAATGATTCAGTAACTTCATTAGTGTTGTCGtcacaatatataaaaactgaaaacgAATTTCCAGAAGCTTCGCAGCCAATAATAGAAACTACTGTTGTTAGCACTACCAGAAATGATGATATCGATATCCCTGATGGTGATGATAAAAAACCAGATTTGGCAGTTGTTGCAACAAGAACAACAGTTCCCGCTAATTACCCGCGAACTAAATACGATTCAATACGAACAAATGTTTACcgtttattaatgaatttcaatttaggTGTTCTTAAACAAAACAGTAATGTAGAAATTGATCAGAatctttttaattcaaaatctttttgTTGCATGGTTTGTAAGCAAGACTTTATTAGCGTTAAACTTTTTGATGAACATTTATCGGAACATCCAGCAGAATGTTTTACGtgtggtaaaaaattttctcgttGGACATATTTCTCAATTCATTTGAAACGTCATTTAGGATGGAAAGATTTCGGTTGTACTATTTGCCAAAAAAAGTTTGTAATTAGGAGCGCATTAGTAGAACATATGCGTATACATACAGGAATTACACCTTTAAACTGTAATTTATGCAGCAAATCTTTCAAACgatattcaaatttaacacAACATAAAAGAGTGTGTCATACCAAAAAGAGCATAAGAAAAAAAGATTATGTTTGTTACTGTGGCGAAGTTTTACCAACAAAAGCTCGTTTTATTTGGCATAAAGAAACCCATGATCCAAAACCGAAATGTTGTCTTTGGTGTTGCGATCGTTTTATTCACGTTAATAGTCTACGACGTCATATTCGTTTAGCACATGCCGATAAATTTGCTTACAATGAGCCAGCCGAATGTCCAATTTGCAataatatatatgcaaaaacTAGTCTTAAAAGTCATATGGCTACACATTCAATGGAAACTCAACACGAGTGTGCTATTTGTAATAAATCATTTAGtacaaaatggaatttaaaaatacatagttGGGTGCATGCAAATCGTACCGCAAAACCTTTTAAATGTGAGCATTGTACAAAAGCTTTTGTACGtgaaattgattataaaaatcatatgaaCGCTCACAAACAAATTCGCCCATACACTTGTGAATATTGCGGATGTAAATTTAtacgtaaatataattatttaagacaTAGACGTGAACATCACGGACAAAAGAAATTCAGTTGTGATTTATGTGGAAAACTTTTTCAtagacattattatttaatagagCATCGTCGTATACATACTGGTGAAAGACCGTTTTTGTGTACCATTTGTGGCAAAAgttcaacaacaaaaacaaatcataaCAAACATCTAAAAATACATCATTCTCGTGATCCTTTTACCTCCGAAGCTTAA
- Protein Sequence
- MMDLVACPVCTLYLHKGMSLAEHLETHPKEQVIKALVSLATGSLSSGDILTNNVTNKTTTPVAPSTATSSANYENFQSANTVLHSSNNLQIRSPSNGNSSSPSSSLNNFTTSSNFSSNIQTTPVISTSFNDVASSRVHSNASSLNYKSNSAYSSGYQVQETHGLQANSNMGNQSSSINFPSHLQHLFNSKTKQLPPPPEYRQAISQLRSQNFARTNTTKSLANLSLNSNNNSNNCNAINTNFNNSNNNSNDNSYQISSNSSTSYSIVNQQTTNFYTNTNNYQETLDFSLPKQHHQSSTVNNSSLPAPPYNSSSHLKRGQNSDISTSNGPCFEFSTYSQPLDCQTTLNEEVVKFPKGVNLEKEVNNPRSPSPICLITSIRSSENSLNESHQASKSQSHSSSVLRFADTPPAAQYIERDSGDFLVQESPRHIVECIEKDNGEFSVIEKVIQSPPSIVSVNEHILEENAQMNNEKQEADDDIHEEVSEEHGCDDKNNELSKNNKSAKFSENDIKTESSENFENENADLIEHKNESKNNEGNEQRLNSSKRKLISKGVKVLSNVKLDANKSLEIVENIQKCSTEEFWTGIVNTIKKEDSDKSYSCNSLPSTSASSEVDEVEELNNLNDKKTAQKCTSTNLSVENATKIIATSVIRLAVNQKQLESKIPSSSKKSKSPKREKDLNEKSQIENEPIASCSSQSRLQNSCVKKNVYRKNPKKLIVKFKNPLPPVTPSPISFVKEGESQEIIDITENESIENDSVKPEDSILIPSINKGMKQKNIDDSDETTLNNMMEQIVNEDDISFGAPGLENEVNTCETVEKNLTENFNLKIEKEPDFADIGKPMQIQDATKIPSASPSTSSLGLSSSYSSPSSSSPLSVSNQEIGSLNDLKIIQNDEFCDEDKNFMSIKTNNCSVENESRNVNEKKSDLSFTTSNITKTVFIIEEIDDDRQCDRKVAVQQTNQIPGQFLNNEFQTVSCGLSTGKTPESFTSDHQPNKQQIQQQIEHAELVIDIQNNQSNTQQNTYCDYPFSFLYSASSTVIPNTANLNFSSGAFTSGATTNQNNNSEHEIIFNSNSSSNSNMIDKTTNSLTSASSSISVYSKTGVNDDNAVNGGIQIFNRYVGPTIFTSREDNESEEKNSYLDLDLCTKHTENNDGETRNNGSSTANGILNINTVTSISTHNSRDNLITELNIRTDEKMPAKGEISEQESNGDIDNSWSQPIYNELTYKYSNPYDVSHESWSLSHDEFFNPHDLNNIRSKVTTNSDIEKDIKPILPGTSTECVNEPAGSKKIKKRKKAPTLFSATTTILDTVNLNNNAASSSLENGQISGAIITKKKAYQCDHCSVVFVRLKDRNHHMVSIHQYKRVNRRLIREAPSSTVTSATINNIVSITDQQSDNVNLAVDNDTKPDVNDSVTSLVLSSQYIKTENEFPEASQPIIETTVVSTTRNDDIDIPDGDDKKPDLAVVATRTTVPANYPRTKYDSIRTNVYRLLMNFNLGVLKQNSNVEIDQNLFNSKSFCCMVCKQDFISVKLFDEHLSEHPAECFTCGKKFSRWTYFSIHLKRHLGWKDFGCTICQKKFVIRSALVEHMRIHTGITPLNCNLCSKSFKRYSNLTQHKRVCHTKKSIRKKDYVCYCGEVLPTKARFIWHKETHDPKPKCCLWCCDRFIHVNSLRRHIRLAHADKFAYNEPAECPICNNIYAKTSLKSHMATHSMETQHECAICNKSFSTKWNLKIHSWVHANRTAKPFKCEHCTKAFVREIDYKNHMNAHKQIRPYTCEYCGCKFIRKYNYLRHRREHHGQKKFSCDLCGKLFHRHYYLIEHRRIHTGERPFLCTICGKSSTTKTNHNKHLKIHHSRDPFTSEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -