Clon016172.1
Basic Information
- Insect
- Condylostylus longicornis
- Gene Symbol
- -
- Assembly
- GCA_029603195.2
- Location
- JAQSLO010000083.1:9685545-9688308[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.028 3 9.2 0.6 1 23 67 89 67 89 0.98 2 16 0.11 12 7.3 6.0 1 23 95 118 95 118 0.95 3 16 0.049 5.3 8.4 1.3 1 23 121 144 121 144 0.97 4 16 0.054 5.8 8.3 0.1 2 20 153 171 152 173 0.92 5 16 0.00011 0.012 16.7 5.4 1 23 181 203 181 203 0.98 6 16 3.1e-06 0.00033 21.6 1.8 1 23 209 231 209 231 0.97 7 16 5.5 6e+02 1.9 0.2 2 23 238 259 237 259 0.86 8 16 6.1e-05 0.0066 17.5 1.2 2 23 604 626 603 626 0.96 9 16 0.00056 0.061 14.5 1.3 3 23 649 669 647 669 0.96 10 16 2 2.2e+02 3.3 4.7 2 23 678 702 677 702 0.91 11 16 1.3e-05 0.0014 19.6 2.2 2 23 706 728 705 728 0.96 12 16 3.1 3.4e+02 2.7 1.3 2 21 740 758 739 759 0.82 13 16 0.00065 0.071 14.3 0.5 1 23 767 789 767 789 0.98 14 16 0.062 6.7 8.1 4.8 3 23 797 817 796 817 0.96 15 16 0.058 6.3 8.2 1.1 1 23 823 847 823 847 0.95 16 16 0.0016 0.17 13.1 1.9 1 23 853 875 853 875 0.98
Sequence Information
- Coding Sequence
- ATGCCCAAAAAAGTTGAAGAAAGTGCTTGGTCGGACAATGATGAAATAGAGCATGAAgagaatgatattaaaaaaaaaagatgttccTTTTGTCATAAATTATTGGGGCAGACAGAAGCATCAAGGCACGAAAACTCATGTAAAATTGCAAAGAAATGTAATGTTTCTAGAGTCCTGTGCAAGAGtggcataaaaaaatttgtgtgcgACATATGTTATTCAacatttgaatttcttaaatctCTAGTAGAACATGAAAAAAGGCATATTCCCCCCGGAGGATATTACTGCAATTACTGTGATGAACGTTTTTGCACTGATTGTGATAAACAAAAACATACAGAAAGTGCCCATAAAGTTTATAAATGCcggttatgtaaaaatttatttgaaacgagcgaaaaatatattcaacataTCAAGTTGGACCATAATGGAAAACAAAACGAGTGGCTTCCATGTGAAAAATGTAGCAGAATGTTTTCTtctgttaaaatattacagAGACATATAGATTCAAATTGTGGAAAGAATAAGCAATTCCAATGTGATCAATGTCATAAGTGTTTCACAACGAAAGGTATTTTAAAAACCCACATGTTAATACACGAAGACAGAAAAGCTTTTGTTTGTCCATATTGCGGTAAAGGTTTTCacaataaatatcaattaaaaagcCATGAAATTTCGCACACCGGAGAAAAACCTTGGAAATGTAATGTGTGTTTTGCCGAATTTGCATGGAAACAATCACTAGTTACACATTCAACCCTTCATACTGGTGTAAAACCGTATATATGCGAATGTTGTGGGTCTAGATTTAGTTGCACTAGTAATATAATTGCGCACCGTAAAAAGCGACCTGATACATGCGGCCTTCCtcaatattgtacaaaattggCAAAAGTGACACCTCGCCCTAGTATATACAATCCTGAAATGTTGACAGCAGATCTTcctattaaagttaaaaaaaatttgaaagtagtAAAAGAATctgataaagaaaaatttaaaataaagtcaaCAAAAAGGGCAAAATCAGTTGAAGTTAACAAAGATgaggtgtcaaaaattaaaaaaccaaaaaaattagaCATATCGGAGATTTCAAATCAAGAAGCATTAAAAGACAAGCATGATGACAATAGTTTAATTAACAAATCTAAAGAtgaagttttggtgaaattCGATAATGAGGAGAGCAGAGATGATAAAGAATCAGTTTCTGTTGGACAGGAATTACATAAAGCAGTTGACAATAACTTGAAAATTGaagcagaaaatattaaagtagaaaaagagTCAGaggaaataatatcaaaaaatgaagaaagaatatCAAATCAAAGGGAAGGTAGAGTTCTGACTAGTGTCTTAAATGATTTGTTTAAAGATGAAGAAGTACATATAAAAGATGAATGTAAGAACTATAGTAGTTgtgatgaaaatgtttttagtgAGGATGAAACCAAAGAAGATTATCCAAGTGATATAAACGATAAAAGTCTTACTGAATATCCCATAGATAATGGTAGGAATAACGATTCTAAAAATGATACTTTCCAATTAATCAAGAACCCAAAAGCTATTAACGGTGAGTCCCTAGCTGCCAAATGTGATAATAAGAACaaggtaattttgaaaaaaaattcaaaaactgtgCTGACGGAGTTTAGGAGAAGGAGTGAGAGATTAAATGGTGCGCATCTTAATACTGTAGTTGAACCTATGAAGAAAAAACGAGGTCgacgaaaaactttaaaaagttcGAGACCTATTCCTCTTCGAAAAAAAACCGATTTGATAAAATGTCCGTATTGTGATAGCACTGTTTATAGAAAATACTCTCTTAAGAAACATTTAAAACGAATTCACCAAAAAAgtgaagaagaaatttttgttgtgtTGGCGACAATTGAAGAAAAAGGACCAAGTTTAGATTGtgatatatgcaataaaaaattcacaggAAAATTATCTTtcgaaaaacattataaattacatGGTGAAGATAAAAGTTTGACTATACCATGTCACGACTGTTATGGTCAGTGCTTTTTCCGCAGTAAAGAAGAACTGAAGCAGCATGTATGCAACGACCACAATGATCTAAAATGCAAAGAatgtaataaaacatttaaattaaaaagttcatttaaaGAACATATCCTACGGATTCACAAAAATAAGCCTAATCCTCCAGAGCCAACTATAACTTGTACTAAGTGTGGCAAACTTGTAAAGAAATGTCTTCTTAGGGATCATGAGCGTTCGAATTGTGGGCAAGATTATTTATATGAGTGTAAAATttgcttgaaaaaattttcaactgctGGTATTTTAAAAGAGCATACAAAAATACACACTGGGGAACTAACTGCTTTTTGTAAGTTTTGTAATAAAGGATTTCGTAATAAATATCAATGCCAGCAACATGAAATGGTTCATACTGGTGAAAAAccatttaaatgtacatatgctGGATGTACTGCCGCCTTTGCTCACAGAAATAATATGATCAATCACTTTTCACTACATACAGGATTAAGACGTTACATGTGCAGTGGATGTACAGAAAGATTTTCTTGTATTTCAAGTTTAAAAGCACATTGGAGAACACATGCCGATTCTTGTGCTTTACATCCTGAAAATACTACAAAAGCACAATTTAAAGTTAGTCTAATTAAAGGACAAGTGGTTCAGTGTTAA
- Protein Sequence
- MPKKVEESAWSDNDEIEHEENDIKKKRCSFCHKLLGQTEASRHENSCKIAKKCNVSRVLCKSGIKKFVCDICYSTFEFLKSLVEHEKRHIPPGGYYCNYCDERFCTDCDKQKHTESAHKVYKCRLCKNLFETSEKYIQHIKLDHNGKQNEWLPCEKCSRMFSSVKILQRHIDSNCGKNKQFQCDQCHKCFTTKGILKTHMLIHEDRKAFVCPYCGKGFHNKYQLKSHEISHTGEKPWKCNVCFAEFAWKQSLVTHSTLHTGVKPYICECCGSRFSCTSNIIAHRKKRPDTCGLPQYCTKLAKVTPRPSIYNPEMLTADLPIKVKKNLKVVKESDKEKFKIKSTKRAKSVEVNKDEVSKIKKPKKLDISEISNQEALKDKHDDNSLINKSKDEVLVKFDNEESRDDKESVSVGQELHKAVDNNLKIEAENIKVEKESEEIISKNEERISNQREGRVLTSVLNDLFKDEEVHIKDECKNYSSCDENVFSEDETKEDYPSDINDKSLTEYPIDNGRNNDSKNDTFQLIKNPKAINGESLAAKCDNKNKVILKKNSKTVLTEFRRRSERLNGAHLNTVVEPMKKKRGRRKTLKSSRPIPLRKKTDLIKCPYCDSTVYRKYSLKKHLKRIHQKSEEEIFVVLATIEEKGPSLDCDICNKKFTGKLSFEKHYKLHGEDKSLTIPCHDCYGQCFFRSKEELKQHVCNDHNDLKCKECNKTFKLKSSFKEHILRIHKNKPNPPEPTITCTKCGKLVKKCLLRDHERSNCGQDYLYECKICLKKFSTAGILKEHTKIHTGELTAFCKFCNKGFRNKYQCQQHEMVHTGEKPFKCTYAGCTAAFAHRNNMINHFSLHTGLRRYMCSGCTERFSCISSLKAHWRTHADSCALHPENTTKAQFKVSLIKGQVVQC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -