Clon010269.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Condylostylus longicornis
Gene Symbol
-
Assembly
GCA_029603195.2
Location
JAQSLO010000040.1:4029235-4031501[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.3 32 5.9 0.2 3 23 217 237 215 237 0.91
2 11 0.68 74 4.8 0.8 1 14 243 256 243 262 0.88
3 11 0.0033 0.36 12.1 1.3 2 23 347 369 346 369 0.96
4 11 4.7e-05 0.0051 17.9 2.2 1 23 381 403 381 403 0.98
5 11 0.00049 0.053 14.7 0.4 1 23 409 432 409 432 0.95
6 11 0.00069 0.075 14.2 1.1 1 23 437 459 437 459 0.96
7 11 3.7e-05 0.004 18.2 1.5 1 23 473 495 473 495 0.98
8 11 5.9e-06 0.00063 20.7 1.3 1 23 503 526 503 526 0.92
9 11 0.00037 0.041 15.0 0.6 1 23 532 555 532 555 0.97
10 11 0.00074 0.08 14.1 0.2 1 23 560 582 560 582 0.97
11 11 0.0011 0.11 13.6 0.3 1 23 588 610 588 610 0.98

Sequence Information

Coding Sequence
atgggAAGTAGCATGTTTATAAATGAACATTGTTCCATAGAAGAAATTTGTCGAACATGTACAATGCATTATGATAGTTGTTCAATGAttccaatttttaagaataattcaaaGGTTGAAATTAAAGCCCATcaaatcatgaaatttttttttgaccttCTTCAATTAGagctTACAGAAAACGATTCCTTGCCTCAAAATATTTGCGAACAATGTTATTCAAAAttcgtaaatttcaaaatatttttagacgaATGTATTGAGGCACATAATACCTTAATAGCAGCTGTGGAAAAGTCGAAATCAATCGCAGAAACTCTTATTcaggaaaaaagtaaaaattcggaaaatgaaatatatgctttggaaaaagaaaatgatcGGGAAATCGAATTTTTAGAAGAGACTTTAGATAACCATCAGGTTTCTACTTGCAATACTGATTCAATAAAACACATGAAACAGGGAAGTGAAATTGCATGCGTAGTAAAAGATCATAATTATCAAGATATTGGTTTGGACATAATAGAAGAGGACAGTAATGTTGAAATGCTTGTCGAATATGAAAACTATAATGACATGAGAACTGACTACATATCGGAATCTGAACTGCATGTTGTGGATAATGAAAATGTAGCATTACTGGATTGTTCTTATTGCAATTTCGCATTTCCCGAAGAGTATTTCGCACAGCACATGAATGATTATCATCCTACCGAAAGTCcgtttttatgtacaaaatgcTTTAGAAATTTTAGGACACAGAGTATACGTGATAAACATGTTCTTTTAAATATGTGCCAAATAAACGAAATAAAGTtacaagattttcaaaatattgcagtAGAAATTTTTGTAGCCGATGACGATGATTACGACCCTAAGGTTTTTAATGAAACTGAATGCTTGGAACAGActgaaattcaaaatgaaacattatacgaaaaaaatgacttattattttcaaatgagACAGATgcaatttgtattgaaaatgcAAAAGACAGTGAAAGCAATTCTAAAAAAGACTTGTCTCTAAGATGTCCTGTTTGTGAGGaacaatttacaaaatctaaatttttttccgaTCATCTGAAGCGTTCACATCCAGACTTTGACAGGAAAGCAATACGATCAAAATATTCATGCGAAGTTTGCGATAAGGACTGTAAATCAAAACAATCTTTAGAATCCCATTTAAATAGTCATAAAGGAATTAAACCATATGCATGTGAGATTTGTAAAACAAgTTTTTTTGGATCAAAAGCTTTACGGACACATATTAGCAATGAACACAGTTCTTTGCAGTTTAATTGTGAAATATGTGGaaaagatttcaataaaaaaagtatttttttatcgCATATGTCAAATCATAAAAAAGACAATGATCCTAATCGTAAGCccgatattaaatataaatgccAATTTTGTCCCAGAACATTCAATACAGTTTCCACATTAACTATACACTCCTTAACACATAAAAAATTGCTAGATAGTAAACATATATGCAATGTGTGTGGAGTTACTTTTAAAAGGGCTGATCACTTAAAAATGCATATGTATGGAGTTCATTTAGATCATAAACCATTTCCGTGCGAGCAATGTGAAAAAAGCTTTCCTACGGCTTGGCAAAGAAATACACACGTTAAAAAATATCACAagaaaaaaaagtataaatgtcAGGTATGTCCAAACGAATATGCTTCATCAAATGCTTTAAAAAGACACAATATGATACATACTGGGGAACTTAAATATAACTGTGATATTTGTGAACTAAAGTTTCCAAAAATATTCCTCTTGGAAgaacatttaaaaactcatgaaattgatgaaaatttaaggCAAGAATCTATTAATGAAGTATACATGGAAATAGCAAAAAGTGTCATTATaccaaattag
Protein Sequence
MGSSMFINEHCSIEEICRTCTMHYDSCSMIPIFKNNSKVEIKAHQIMKFFFDLLQLELTENDSLPQNICEQCYSKFVNFKIFLDECIEAHNTLIAAVEKSKSIAETLIQEKSKNSENEIYALEKENDREIEFLEETLDNHQVSTCNTDSIKHMKQGSEIACVVKDHNYQDIGLDIIEEDSNVEMLVEYENYNDMRTDYISESELHVVDNENVALLDCSYCNFAFPEEYFAQHMNDYHPTESPFLCTKCFRNFRTQSIRDKHVLLNMCQINEIKLQDFQNIAVEIFVADDDDYDPKVFNETECLEQTEIQNETLYEKNDLLFSNETDAICIENAKDSESNSKKDLSLRCPVCEEQFTKSKFFSDHLKRSHPDFDRKAIRSKYSCEVCDKDCKSKQSLESHLNSHKGIKPYACEICKTSFFGSKALRTHISNEHSSLQFNCEICGKDFNKKSIFLSHMSNHKKDNDPNRKPDIKYKCQFCPRTFNTVSTLTIHSLTHKKLLDSKHICNVCGVTFKRADHLKMHMYGVHLDHKPFPCEQCEKSFPTAWQRNTHVKKYHKKKKYKCQVCPNEYASSNALKRHNMIHTGELKYNCDICELKFPKIFLLEEHLKTHEIDENLRQESINEVYMEIAKSVIIPN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-