Clon011290.1
Basic Information
- Insect
- Condylostylus longicornis
- Gene Symbol
- -
- Assembly
- GCA_029603195.2
- Location
- JAQSLO010000044.1:10351008-10352977[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0071 0.77 11.0 0.0 2 23 209 231 208 231 0.94 2 10 0.28 30 6.0 1.0 6 20 240 254 240 257 0.95 3 10 2.9e-07 3.1e-05 24.8 0.3 1 23 263 286 263 286 0.96 4 10 0.00086 0.093 13.9 0.6 2 23 295 316 294 316 0.95 5 10 4.7e-05 0.0051 17.9 1.2 1 23 324 347 324 347 0.91 6 10 0.032 3.5 9.0 0.3 3 23 355 374 354 374 0.94 7 10 6.6 7.2e+02 1.7 1.7 2 23 384 404 383 404 0.92 8 10 0.012 1.3 10.3 2.2 1 23 412 435 412 435 0.96 9 10 1.6e-05 0.0017 19.4 5.2 1 23 441 463 441 463 0.97 10 10 1.2e-05 0.0013 19.7 2.2 1 23 469 492 469 492 0.97
Sequence Information
- Coding Sequence
- ATGATTTGCTTTTTGTGTCTTAAAAAAAGCGAAGctcttataaatatatacgaCGGCTTAGAAGAAGGCTTTATATCATTAAATATACCAAATATTATTGAGAAGCACGTTTGTTTTAAGCCCGATAAAGAAAATCCAATGTTGTGTAAAAACTGTTGGCTGATTATAGAATCcttctatatattttgtttaaatataaaaaaagctcATAATGGGGAAGAGGAAAGGAAAAGTGAATATGATATTAAACCTGAATTAAAATGTGAAGTGGAAGAAGCCATTTCAAGCGATCACTTAAGTTCAATCTGTGATAATGAAGATACTTCTTTCTGTGTCAAAAATGAAGATGATGTTATTAGAAATGTAGAGAAAATTTCAAGGTGCAGATTAAGCAGACAATGTAAAAACAAGTTATTaaccaaaaatgaaataataaatgtcCATAATGGAAacgaaatagaaaaagaaaaattaaatgcgaGTAGCAGAGAAGAGCTTTTTATAAAAGATGTGGAAAAACAGAATGTCGACAGCAAAGATGTTtcaacaaagaaaagaaaaagaagcacGGTTGTAAGAAACGCTGACGCAGTTGaccaaaaaatttccaaatatatgACATTATCATGTGATATTTGTGGGGAGCAATCACCCACTTTAGCCGCACTCAAATCCCACTTCCGTCTCATTCATCAAGAAAATGGGTATGCGGTATGTTGTAATCGAAAATTCAAAAAGCGATATTTACTCATAGACCACATTGATTGCCATTTAAATCCGGACCATTTCAAgtgCGGATTATGTGATAAAACTTTCAGTGTAGCAGATTCTTTAAGGAATCATATGAGGGATATTCACGAAGCTAGAGAAAGAGTATTAGTTCAGTGTGATCAATGTCCTAAAAAGTTTATTcggaaatcaattttattaaggcATAAAGCTTACCACTTGCCAGTTGAAACATGGGCATTTCCATGTGATGAATGTGGGAAAATatttCCAAGTAAGTTCTACCTTAGGTCACACAAAAGTTTCTCTCATAATAGTCTACCGACGAAAATATGCTACATCTGCGGTAAACCGGTTCCGACAAGCCGATATAAGAAGCATATGAGATCCCATGACTCTAAAAATGAGGAAGAAAAAGTTGAATGTGAAATATGTAaagcaaaattgaataaaaaatatattaaagtgcATAGGCAGCATCACGAGGAAGCGgaaaaagaagattttttttgtcCAATTTGTAATCATAAATCTCCCAATCGTAGGGCATTGTACATTCATACACGATACACACATGCAGATCAGCGAAATCATGAATGTCACATTTGTCAAAagaagtttaaaagaaaattagccTTAAggCAACATATGGGAACTCATACTGGTAACAACTTGTATTCATGTCCTTATTGCCCAAAAACTTTTACATatgattcaaatttttatattcataagaaAAAGGAACATCCAAAAGAAATCGAAATTGAAAGACAAAGGCAAACTAGGACAAATTTCACTGAACACAAAAGTAAATCTGAACCAGCTCAAAAAGTTGaggaattcaatattataaatgaagatTCAATAACTTTTGAggacattaaaattgaaaattttgatgaattcaATAGCATGGAGTAA
- Protein Sequence
- MICFLCLKKSEALINIYDGLEEGFISLNIPNIIEKHVCFKPDKENPMLCKNCWLIIESFYIFCLNIKKAHNGEEERKSEYDIKPELKCEVEEAISSDHLSSICDNEDTSFCVKNEDDVIRNVEKISRCRLSRQCKNKLLTKNEIINVHNGNEIEKEKLNASSREELFIKDVEKQNVDSKDVSTKKRKRSTVVRNADAVDQKISKYMTLSCDICGEQSPTLAALKSHFRLIHQENGYAVCCNRKFKKRYLLIDHIDCHLNPDHFKCGLCDKTFSVADSLRNHMRDIHEARERVLVQCDQCPKKFIRKSILLRHKAYHLPVETWAFPCDECGKIFPSKFYLRSHKSFSHNSLPTKICYICGKPVPTSRYKKHMRSHDSKNEEEKVECEICKAKLNKKYIKVHRQHHEEAEKEDFFCPICNHKSPNRRALYIHTRYTHADQRNHECHICQKKFKRKLALRQHMGTHTGNNLYSCPYCPKTFTYDSNFYIHKKKEHPKEIEIERQRQTRTNFTEHKSKSEPAQKVEEFNIINEDSITFEDIKIENFDEFNSME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -