Clon014635.1
Basic Information
- Insect
- Condylostylus longicornis
- Gene Symbol
- zfy1
- Assembly
- GCA_029603195.2
- Location
- JAQSLO010000074.1:1811978-1813815[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.6 5e+02 2.2 0.1 2 11 60 69 60 71 0.90 2 14 0.00057 0.062 14.5 0.7 1 23 102 124 102 124 0.96 3 14 2.5 2.7e+02 3.0 0.4 2 9 179 186 178 189 0.87 4 14 0.13 14 7.1 0.5 2 13 242 253 241 255 0.86 5 14 0.00027 0.029 15.5 1.1 1 23 285 307 285 307 0.96 6 14 0.25 27 6.2 0.2 2 11 312 321 311 333 0.74 7 14 0.00016 0.018 16.2 0.9 1 23 351 373 351 373 0.98 8 14 0.0071 0.77 11.0 2.5 2 23 379 400 378 400 0.97 9 14 0.035 3.8 8.8 0.9 1 23 406 429 406 429 0.90 10 14 0.014 1.5 10.1 1.1 1 23 435 460 435 460 0.93 11 14 4.2e-06 0.00045 21.2 0.6 2 23 467 489 466 489 0.96 12 14 1.5e-05 0.0016 19.4 2.4 1 23 497 519 497 519 0.99 13 14 0.00059 0.064 14.4 0.6 2 23 526 547 525 547 0.96 14 14 0.00027 0.029 15.5 1.2 1 23 553 575 553 575 0.97
Sequence Information
- Coding Sequence
- atgtcTTGTAACTTTAAAACTGAAGACGAATTCAGTGGAATTTCTAGTAATAGTAGAAATTCAAGTAGCGATGAAAATGACGAAAAGCTCcctaatgaaattataaaaattgagataGAGACTGATTGCGATTCGgatgataaaattttcagaactgAAACTGTTACAACAATTAGGTATTGTCAATATTGTGAGTTAAGTTTTCGTTTAGATGAGAAGCACGATTGCGAAAAGTgtgaaataatacaaaaaagaataGCAAAACAtgatagaaatttgaaattcttacaAATAGAGGGTATATATTTGTGTAAAGATTGCCCCAGATATTATGAAAACGTTAAGGACTTACAAAATCACGAAAAAACTCATGttgataatattacaataacagaaaaaaaccatgtgcaaaatagaaataataacatATCTGCTGATATCAATGGGAGTTGTACACTCACTGTCGACgtaaaacataatgaaaacgGAGatgattttgaaaacaaaaattatagtgaGTTTGAGATATTTATCAAATGCAAAAATTGCGGAAAACATTTAAATgaagataatgaaatttttcagtttaaaaatttatgttctgATTGTGACAAATCAAGAGAAATTGACGGCAATTCAGAAGCTTCTATAAGCGAGAATGAGACATgcctaaaagaatattttcaaggtACTcggtatagtaaaaaaaatgaaaattctattaaatgtcctcattgcaatattaaattcaaagatACTCAAAACCATGATCAAAGTAAATGTCtgaaagtacaaaaattaatcaaaataaatgcgAAAAACTGTTACGAAGCTCTTCAGAATAAAggaatatatttatgtagagAATGtccaagattttttaataatgaaaatgaattaatttctcATAGAAAAAAGCATTATAACAATGGACAGTGTACTATATGCTTCAAATCCTTTAAAGGTATAGACATAATTGAACACATCAAAGTTCAGCACCCAGACTGCTACATAAAAGGAAATTCACAAAAGTCGAACtcaaaaaaatcttatgaatGTTCATATTGTAAAAGACAGtttgtttctttaatatattggaaACGTCATTTATTAGTTCATCAAAGTAATGAGCTTAAGTGCGAATTTTGTAATAAGGTATGTCAAAGTTCAATTATATTGAAGAACCATATAAGAACCCATACTGGAGAACGTCCTTTTATTTGTCAATTGTGTCCTGCAGCATTTTCTTTGAAACATAATTTAGAtctgcattttatatataaacacacTGATGAAAGACCATTTGAATGTCGATATGATGGGGGCTGtggtaaaacttttaaaactgaTCAGCTAAGAAATTATCACGAAAGGCGTCATACCGGAGaaattctcGGAAAATGTGAAATTTGTGGTATTGAATACAGAAATAAGtcCGCATTCAGAAAACATATGAAATTACGACATATGAGTTATAATGAACGTCCTTATCAATGTGAATATTGCGATAAAAAGTTTGTGGAACACGGACGACTCAAAGAACATGTTCGAACACACACAGGCGAAAAACCTTTGCAATGTGATATATGTTTCAAGGGTTTTGCTAGATACAGTGTTTTGagagaacataaaaaattacacaCTGGAAAGAAAAATCATGTATGTAGCAGATGTGGAAAAGCATTTGCTCAAACTGCTGGTTATTTTAATCACTTAAAAAATCATGCTTAG
- Protein Sequence
- MSCNFKTEDEFSGISSNSRNSSSDENDEKLPNEIIKIEIETDCDSDDKIFRTETVTTIRYCQYCELSFRLDEKHDCEKCEIIQKRIAKHDRNLKFLQIEGIYLCKDCPRYYENVKDLQNHEKTHVDNITITEKNHVQNRNNNISADINGSCTLTVDVKHNENGDDFENKNYSEFEIFIKCKNCGKHLNEDNEIFQFKNLCSDCDKSREIDGNSEASISENETCLKEYFQGTRYSKKNENSIKCPHCNIKFKDTQNHDQSKCLKVQKLIKINAKNCYEALQNKGIYLCRECPRFFNNENELISHRKKHYNNGQCTICFKSFKGIDIIEHIKVQHPDCYIKGNSQKSNSKKSYECSYCKRQFVSLIYWKRHLLVHQSNELKCEFCNKVCQSSIILKNHIRTHTGERPFICQLCPAAFSLKHNLDLHFIYKHTDERPFECRYDGGCGKTFKTDQLRNYHERRHTGEILGKCEICGIEYRNKSAFRKHMKLRHMSYNERPYQCEYCDKKFVEHGRLKEHVRTHTGEKPLQCDICFKGFARYSVLREHKKLHTGKKNHVCSRCGKAFAQTAGYFNHLKNHA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -