Basic Information

Insect: Condylostylus longicornis
Gene Symbol: salm
Assembly: GCA_029603195.2
Location: JAQSLO010000002.1:1462046-1500244[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 5.4e-06 0.00058 20.8 0.9 1 23 680 702 680 702 0.98

2 7 1.1e-05 0.0011 19.9 2.1 1 23 708 730 708 730 0.98

3 7 0.018 1.9 9.8 1.5 2 23 1083 1104 1082 1104 0.98

4 7 7.6e-08 8.2e-06 26.7 0.5 1 23 1110 1132 1110 1132 0.98

5 7 0.00023 0.025 15.7 2.3 1 23 1142 1164 1142 1164 0.98

6 7 0.039 4.2 8.7 3.1 2 23 1497 1518 1496 1518 0.97

7 7 4.4e-08 4.7e-06 27.4 1.3 1 23 1524 1546 1524 1546 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	5.4e-06	0.00058	20.8	0.9	1	23	680	702	680	702	0.98
2	7	1.1e-05	0.0011	19.9	2.1	1	23	708	730	708	730	0.98
3	7	0.018	1.9	9.8	1.5	2	23	1083	1104	1082	1104	0.98
4	7	7.6e-08	8.2e-06	26.7	0.5	1	23	1110	1132	1110	1132	0.98
5	7	0.00023	0.025	15.7	2.3	1	23	1142	1164	1142	1164	0.98
6	7	0.039	4.2	8.7	3.1	2	23	1497	1518	1496	1518	0.97
7	7	4.4e-08	4.7e-06	27.4	1.3	1	23	1524	1546	1524	1546	0.99

Sequence Information

Coding Sequence: ATGATACAATTTGGAACTGTTAAATATGGAATTGTTAAACAACTTAAAGATCGAACTAGATCTGAACGTGaaatttcAAGCGATCAAGAAGAGAATGGTAGATCAAAATCCAATTCACCAATAATTGAATGCAGTAAATCAGCAAGTCCAATTCAATTAGAATCCCACCATACGTCAAAAATAACAGAAACAGTAACTTCTGATATAGAAGAAACTttagaaactaataaaatttcaacaccattaaataataataatcataataaaaatattaatagtaataacaatagttGTAACAATCATAGTATAGAAAGCGATCataatcataacaataatatagaaattacatTAAgtccaaataaaaattcaattgcaacaaatagtCCGATTCAAATAAACACCGCCGAAATGTTAGACACATTAGCTACATCATATAGAgaattagataaaattaataataaaacaccATCACCAGCTTTGGCTGATCAAAATAAAGTAGCAGATCATCCACCAACTTCATTGTTGGcgggtgatgatgatgatgaaaccATTATGACCACTTCACCTATAgttgatattgaaaataataatacggCGGAAATCAGTGTAGAAAAATCACTGAAAATTAGTAAGTCGGATTTGGTCAACGAAAGtgataatttcattgaaaatgataaaaaattatctgtaaataataataacaataatagtaatattgaaaataataatggtaataatgataatagtaatgataacgAAAGTAATGATAATGGTAGTAGCATtagtagtaaaaatataaatttaactaagactagtaattttaatgaaaatagcaataattttgagaaaagcTTAGAACATAATAAGACAAATGGCGATGAAACTCAATCAGAagacaaaatattagaaaataagaaGTCGTTATTAAAGGAGGaaagtaaaattacaataaataatctaGAAAATATAGAGTCGGTGGACAAAGTAATTGATTCACAAAATAAAGATATAGTAATCAAAAAAGCATTAGCTAAAAATGACGCAAGTTCTCCACCTAAGTTAGGGGACAACTTTTCAATAGAACGGAGAAATTCTACAACAAATTCGACAGATggaaaacaaaatcaacaaaGCACAAGCAGTTGTACAAGTCCATTACCTGGACATTTGCCATTGCCACAAGATTTTCCACAATTTCCTGTAGGAGGGCCAGTAACTCTTGAAGCAATACAAAATATGCAAATGGCGATAGCGCAATTTGCTgcaaaaacttttgcaaatggTGGTAATGAAGCTACTAATGAAGCTGCAATGAAACAGTTAGCATTTTTGCAGCAAACGCTGTTTAACCTACAACAGCAGCAACTATTTCAAATTCAGTTAATTCAGCAATTGCAATCCCAGTTGGCTCTCAATCAGATGAATAAGAGTCAAAATGCCAGTGAACAAGATCAAGAGGAAGATCGTGAAATGGATGATGAAGATCGAGACAATAATGATGATTTACCAAACAGAAGATCTCAAAATCGTGGAGAAACCAATAGTTTAAACAAAAAGACTTTAAATGATGATCACATTTTGGAAAATGGTGAACAATTTAAGTCTAAAGATAAAGATGGAGAGGAAGACATAATAAATATGGAGgacgatgatgatgacgatgatgacaATGATGATAGTATGatagaatttaagaaatttagacCAGATGAACCTCTTGAGTATGGAGAAATTCGATTACCGTATAGACTGGACgataagtatttttcaaaagacAATGTACCGCTGCCATATGGCGGTCAGGATGAGAATCAACCATTGCCACCGTACGGTTCTGATTTAGCTTCAGCAATAATAACAAATCATGATAATCCTCCATCTCTGAACGAACCAAATTCTTTGGAGATGTTACAAAAGCGCGCACAAGAAGTACTTGATTCGGCGTCACAGGGAATTTTATCTGGAAATTTAGCTGATGAATTTGCTTTTGGCAAAGACAAAAATGGTGATAAAAATCGAAATGAACCATTTTTTAAACATAGATGTCGATATTGTGGTAAAGTTTTTGGTTCTGATTCCGCTTTACAAATTCATATCAGATCTCATACTGGCGAGCGTCCGTTTAAATGTAATGTGTGTGGCAGCCGTTTTACCACTAAGGGgaatttaaaagttcattttcAGAGGCATGCTCAAAAGTTTCCTCATGTTCCAATGAATTCAACACCTATTCCAGAGCATTTAGATAAATTTCATCCGCCACTGTTAGATCAAATGTCACCAGATTCATCTCCAACTCATCAACCATCACAATTGCCAACACATATTCCAAATGTTCCTGTCTCATTACCTTTGTCATTCCCACCTGGAGCTGGTTTCCCAGGTTTACCTTCCATATATAGGCCACCATTGGATATTTTAAAGTCACTAGGACCATATGCGAATCCATTCTTTAGCGGATTACCACCAATGCCACCACCTCCAGGGATTCAACCACCACCACAGCAACAACCGCAGCAGCCTACCCCTCAAACAACAACTCCAGTTTCACAATCAAATACAGCTACGCCTTCAATATCTCCACCAGAAAAGTCACCTGTTGCTACACCTATTTTAAGAAAGGATAGTGAAGAAAGTCCAAAAGATTTAAGAAAGTCAGCATCACCTCCACCGACAGACAAGTCTAAAGAAGAAACACCCCCCGAGCCCATTAAAGATACTAGTATAGATGAACCTgtcagtttaaaaattaaagaagagaaaaaagatGTGGATGAAGAAGACATTATACCGGTACCTACCCCAAAAAGACCGGCTAGTGCATCGTCACCCATTATATCGCGAGAGCCGCAAATACCACCACCACAGATTGTTCCAACAATGCCACAGCGATCCCCAACTCAACCTTTGCTTGCAATGCCACCACATAATGCGGCAGATTTACCGATGGGATCCGCTCATTTGCCTCCGTCACTCATGACACGAGAGGAACTTTTCGAACACCATCACCGGATGCAAATGAGTTTTCGGGGATCACCTGATCGCGGATCTCCAATAAGAAGTCCGGCCGGTATTCCTGGCTTACAACGTCCACCGTTTTTGGGTCCCATGAAACACGAGATGGCTCTTCTACCACGTCCGCATAGTAATGATAATTCATGGGAAAATTTTATCGAGGTCTCCAACACCTCAGAAACTATGAAGCTTaaagaattaatgaaaaataaaaaactaacagATCCAAATCAATGCGTTGTTTGCGATAGGGTATTGTCCTGTAAAAGCGCTCTACAAATGCATTACAGAACTCATACAGGCGAGCGTCCATTTAAATGTCGTATTTGTGGACGAGCTTTTACTACTAAAGGAAATCTAAAAACTCACATGGCTGTGCACAAAATCCGACCACCTATGCGAAATTTCCATCAGTGTCCTGTATGCCACAAGAAATATTCAAATGCTTTAGTCTTACAACAGCATATTCGTTTACACACTGGTGAGCCCACAGATTTAACACCAGAACAAATTTCTGCTGCTGAAATTAGAGATTTCCCACCATCTATGATGCCAGGTGCACTTTTTAATCCATTTAATCCGTTTAATTTTGGAATGGGACCACAAAATGGACACATGGGCTCAGAATCTTCTTTAGGTGAACTAGACGACAATATGGACTGCAGTGATGATTTCGATGATGACATAGACGATGACCAAATTTCAAATGGGGATGACTCAGATCGCCCAAAATCAACAGAAGAAATCAAAGGAATGCTTTTTgagcagaaattaaaaattggaaatagcCTAGCAAATAAATCTGAAGCAAGTAATGGTTCTGCTCCAGGAAGTCCAAtaagtgttttaaataaatcttcacCAGTTCCATCAGATTTGTCTCAAGGTGCTTTAGATTTAACACCACGTTCAACTTCAATTACAAACAATACACAACCATTGTTAACAAAACCCTTACCATCACCAATCGCGTCTCAACCTCCAAGTTCTAAAATCGATAGACCAGAGTCATCTGAGAGTATTCAAAGGCCACCCTCACGACCGCAATCACATCATGATTTATTTAGAGAACAACAACATCAACGGGATCTTCAATTACAGCATTTTCATCACTTTCATCAACAACACCAACAACTTCAACAGCAACAACTGCAACTCCAACAACAACAGCATCCACAACATCAACAGCAGCCACAATCACATCCACAACCTTTACCACAAAATCCACAACAACAAATGCATCCTTTATCAAGTCAACCACCACCGCTACCACCGCCACCACACCTTACAAGTCCCGTTAATAATATAATGCCACAAAGACCACCATTTGGAATGTTTCCAAATCTACCGTTATTTCCACCAGGAATGAGTCAAACATCAAATATGTGTAGCGCAATGAATACTATTGCTCAGTCAGTAATGCCTGCAGCTCCATTTAATCCATTAGCTTTATCAGGTGTCAGAGGTAGCACTACCTGCGgcatttgttttaaaacattCCCTTGTCATTCAGCTCTTGAAATTCATTATAGAAGTCATACGAAAGAGAGGCCATTTAAATGTTCCATATGTGATCGAGGATTTACAACTAAAggtAATCTCAAGCAGCATATGTTGACGCATAAAATACGTGATATGGAGCAAGATGCTTTTAGAAATCGTGCTGTTAAATTCGAGTATATGAGGGGCTTAAAAGATGATTacgaataa
Protein Sequence: MIQFGTVKYGIVKQLKDRTRSEREISSDQEENGRSKSNSPIIECSKSASPIQLESHHTSKITETVTSDIEETLETNKISTPLNNNNHNKNINSNNNSCNNHSIESDHNHNNNIEITLSPNKNSIATNSPIQINTAEMLDTLATSYRELDKINNKTPSPALADQNKVADHPPTSLLAGDDDDETIMTTSPIVDIENNNTAEISVEKSLKISKSDLVNESDNFIENDKKLSVNNNNNNSNIENNNGNNDNSNDNESNDNGSSISSKNINLTKTSNFNENSNNFEKSLEHNKTNGDETQSEDKILENKKSLLKEESKITINNLENIESVDKVIDSQNKDIVIKKALAKNDASSPPKLGDNFSIERRNSTTNSTDGKQNQQSTSSCTSPLPGHLPLPQDFPQFPVGGPVTLEAIQNMQMAIAQFAAKTFANGGNEATNEAAMKQLAFLQQTLFNLQQQQLFQIQLIQQLQSQLALNQMNKSQNASEQDQEEDREMDDEDRDNNDDLPNRRSQNRGETNSLNKKTLNDDHILENGEQFKSKDKDGEEDIINMEDDDDDDDDNDDSMIEFKKFRPDEPLEYGEIRLPYRLDDKYFSKDNVPLPYGGQDENQPLPPYGSDLASAIITNHDNPPSLNEPNSLEMLQKRAQEVLDSASQGILSGNLADEFAFGKDKNGDKNRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHAQKFPHVPMNSTPIPEHLDKFHPPLLDQMSPDSSPTHQPSQLPTHIPNVPVSLPLSFPPGAGFPGLPSIYRPPLDILKSLGPYANPFFSGLPPMPPPPGIQPPPQQQPQQPTPQTTTPVSQSNTATPSISPPEKSPVATPILRKDSEESPKDLRKSASPPPTDKSKEETPPEPIKDTSIDEPVSLKIKEEKKDVDEEDIIPVPTPKRPASASSPIISREPQIPPPQIVPTMPQRSPTQPLLAMPPHNAADLPMGSAHLPPSLMTREELFEHHHRMQMSFRGSPDRGSPIRSPAGIPGLQRPPFLGPMKHEMALLPRPHSNDNSWENFIEVSNTSETMKLKELMKNKKLTDPNQCVVCDRVLSCKSALQMHYRTHTGERPFKCRICGRAFTTKGNLKTHMAVHKIRPPMRNFHQCPVCHKKYSNALVLQQHIRLHTGEPTDLTPEQISAAEIRDFPPSMMPGALFNPFNPFNFGMGPQNGHMGSESSLGELDDNMDCSDDFDDDIDDDQISNGDDSDRPKSTEEIKGMLFEQKLKIGNSLANKSEASNGSAPGSPISVLNKSSPVPSDLSQGALDLTPRSTSITNNTQPLLTKPLPSPIASQPPSSKIDRPESSESIQRPPSRPQSHHDLFREQQHQRDLQLQHFHHFHQQHQQLQQQQLQLQQQQHPQHQQQPQSHPQPLPQNPQQQMHPLSSQPPPLPPPPHLTSPVNNIMPQRPPFGMFPNLPLFPPGMSQTSNMCSAMNTIAQSVMPAAPFNPLALSGVRGSTTCGICFKTFPCHSALEIHYRSHTKERPFKCSICDRGFTTKGNLKQHMLTHKIRDMEQDAFRNRAVKFEYMRGLKDDYE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -