Clon011355.1
Basic Information
- Insect
- Condylostylus longicornis
- Gene Symbol
- -
- Assembly
- GCA_029603195.2
- Location
- JAQSLO010000044.1:13561444-13563355[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.4 2.6e+02 3.0 4.5 3 23 227 248 225 248 0.95 2 10 0.01 1.1 10.5 0.4 6 23 257 274 257 274 0.98 3 10 0.0003 0.032 15.4 2.0 1 23 280 303 280 303 0.97 4 10 0.00029 0.031 15.4 3.7 1 23 310 332 310 332 0.98 5 10 1.9e-06 0.00021 22.3 0.4 1 23 340 363 340 363 0.97 6 10 3.1e-05 0.0034 18.4 0.3 3 23 371 392 370 392 0.93 7 10 0.00059 0.064 14.4 0.7 2 21 401 420 400 423 0.89 8 10 1.7e-05 0.0019 19.2 0.5 2 23 433 455 433 455 0.97 9 10 0.00053 0.057 14.6 1.9 1 23 461 483 461 483 0.96 10 10 3.1e-05 0.0033 18.5 8.6 1 23 489 512 489 512 0.98
Sequence Information
- Coding Sequence
- atgaTCTGCCGTTTGTGCTTGTGTgatacagaaaattattttgggttTTTTGATTCTTATGGTCTAAATGTTTCCGCTGCTAGTATTGTTAGTAAACATTTTTGGTTCGAGCCTAAAATAGACGATTCCATGTCAATTTACATATGTGTATCATGTTGGGAAACagttaaacattttaatgatCTCTTCAACACGGTTCAAAAAgctcataatatattaaatgagaACGTTCTTTTGATCAAAAGTGACCCTGGCGAATCCGAGCTCTTAAATAATGACAACCcaacaaatgaaattatatcTGATAATAAAGATGCAGAGTTTGATTGGGATCGTCTAgattttgacaaaattaattctgattttaaaaCGGAAGCTATTGATGGTGATGAAGTAGAAGAAAAAGTTAAGTTGTCCGTATTGAAAAAAGTTGAACTTGAATCTGAAATCAAAACTGAAAAGGTGAGATTACGAAAAAGGGGTcgaaagcgaaaaaaaaaattagttcaattAACATCAGACGAAGAAAATGAAACACAGAAAACCTATGATAATTTTGATAGCGAAAGAGAAAATGGACAAgttaatgacaaaaataattttaagtctgAGGAAAATGCTCCAACAAATAAATTAGCagaagaagataaaaaaatcgctacttttatgaaaatgatttgCTCTGTATGCCAATCTGAATGTCACAGTTTTTCATCTCTGAGATGGCATTTCAATACAAAACATAAACAGAAAGGATTCGCTATCTGTtgcgataaaaaattttttaaaagaagtaaTTTAGTAGATCATGTTGAGAAACACATAAATCCTGAAAGTTTTAAgtgtaacttatgtaacaaaatttgtatttcacgTTGGACATTGAAATTGCACATTTCTAGAgttcatgaaaatttagaaCCGGGACATCAGTGTTCTTTTTgtggaaaatcttttaaattaaaaactattctaAAGCGGCATCAATTAATACACATGcctgaagaagaaaaaaaatttatttgtaatgaatgcgggaaaaagtaCCCTTCAAAAGGTACTCTTTCAAGTCATATTAGAATATATCACGATAGACGATATGCTGGAATGTGTGACATTTGCGGAAAAACCTATAACAATAAGGAAGACGTTCGACGGCATCGTTTAGAAGTTCATGAAGGTGTAGCTAAGGAAAgtgttaaatgcaaaatttgtttcaaagaaTTTGCAACAAAATATCAATACAATATTCACAAAGTTGAAGAACATGGAGATCCTAATCAAAAACCTGAAAACAGATGCAAATATTGTGATAAAATTTCCGCAAACTCTGAAGCTCTTAAAAGACATATTCAAAAAGTACACAaagctaaattaaaatttttctgtaatttttgtgataaagtttttaaaacagatTTGTCTTTAAaggagCACGAGACTACACATACAGGAGAACCTCTCTACGTCTGTCCACATTGTCCTAGAACGTTTACTCATAATTCTAATATGCACCATCATCGAAAAAGAGCTCACCCAGTAGAATTTGAACAAgctcgtaaaaaaaaaaatgaaaaaaaggagaCGTGGCTGCAAATTACTGCTTTCCAAAACTGA
- Protein Sequence
- MICRLCLCDTENYFGFFDSYGLNVSAASIVSKHFWFEPKIDDSMSIYICVSCWETVKHFNDLFNTVQKAHNILNENVLLIKSDPGESELLNNDNPTNEIISDNKDAEFDWDRLDFDKINSDFKTEAIDGDEVEEKVKLSVLKKVELESEIKTEKVRLRKRGRKRKKKLVQLTSDEENETQKTYDNFDSERENGQVNDKNNFKSEENAPTNKLAEEDKKIATFMKMICSVCQSECHSFSSLRWHFNTKHKQKGFAICCDKKFFKRSNLVDHVEKHINPESFKCNLCNKICISRWTLKLHISRVHENLEPGHQCSFCGKSFKLKTILKRHQLIHMPEEEKKFICNECGKKYPSKGTLSSHIRIYHDRRYAGMCDICGKTYNNKEDVRRHRLEVHEGVAKESVKCKICFKEFATKYQYNIHKVEEHGDPNQKPENRCKYCDKISANSEALKRHIQKVHKAKLKFFCNFCDKVFKTDLSLKEHETTHTGEPLYVCPHCPRTFTHNSNMHHHRKRAHPVEFEQARKKKNEKKETWLQITAFQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -