Clon013236.1
Basic Information
- Insect
- Condylostylus longicornis
- Gene Symbol
- -
- Assembly
- GCA_029603195.2
- Location
- JAQSLO010000055.1:3330063-3334964[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.019 2.1 9.7 1.7 2 23 229 251 228 251 0.94 2 17 1.5 1.6e+02 3.7 0.0 6 20 260 274 260 275 0.96 3 17 0.00032 0.034 15.3 0.9 2 23 285 307 284 307 0.92 4 17 0.0016 0.17 13.1 0.3 1 23 315 339 315 339 0.91 5 17 0.26 28 6.1 0.8 1 17 344 360 344 364 0.86 6 17 0.00023 0.025 15.7 2.0 2 23 375 397 375 397 0.95 7 17 0.044 4.8 8.5 0.3 2 12 433 443 432 448 0.89 8 17 0.014 1.5 10.1 0.3 2 23 594 616 593 616 0.94 9 17 2.3 2.5e+02 3.1 0.0 6 20 625 639 625 640 0.95 10 17 0.00097 0.11 13.7 1.4 2 23 650 672 649 672 0.92 11 17 0.00065 0.07 14.3 0.3 1 23 680 704 680 704 0.91 12 17 0.0043 0.47 11.7 0.4 1 20 709 728 709 730 0.94 13 17 0.00017 0.019 16.1 0.3 2 23 740 762 740 762 0.94 14 17 9.5 1e+03 1.2 0.1 2 8 771 777 770 783 0.82 15 17 0.00054 0.058 14.6 0.8 2 23 798 820 797 820 0.96 16 17 0.0014 0.15 13.3 2.5 1 20 827 846 827 849 0.92 17 17 0.00079 0.086 14.0 4.9 1 23 855 878 855 878 0.97
Sequence Information
- Coding Sequence
- atgctaGAAAATGCTTGCACTTTGTGCAACGTTGAAAGCGCTAATGAACTGATCAATATTGTGGAAAGTTTTTATGAAGAAACCAATGTAAAGGCTTTAATTACCAAATACTTACACATCCAGGCAAGTGCTCAGAGTACTTCCTTGTGTATAGAATGttttgaacaaataaaatcatttcataaatattacaaaaaagttcatgaagttcaaaaatatatttccttTCGCAAAACGAACAAATTTAGCACTGATAAAAATGAAGAGCATAAAACTAAGGATTTAACAATATCTCCACCGGCTAAGGGTTTTATTAAAGTAGAGTCAAATGAAGTATTTGATGTTTTTGTtggaaattcaattcaatccgaAATATCGCATGATAACACATCTATAAAAGTTGAAGAAAGTGATAATGAGAATGATGATAGCAAAAGCGAAGGAAGCAAAAATGATTTAGAACAAAAACTCGAAAACAgCAAAATAACACAACTTCAAGATGAAAGCCACAAAACTTTAATAAGAGAAAAGCAATATAACACTAAGAATATAGAAGATTCCAATCTAACAATTATAGGGGATGAAACTGAACCCGATGTATCACCTTTAAAgccagaaaattctaaaattgattttaacgtTGCTAAAGATCAAGATAACAAGCTTTACAGTTTTATGAATCTCAATTGTACAAtgtgtaatgaaaaatttacatcatTCAATGGAATAAAACGACACTATAATAACACACATCAAACAAGAGGTTTCATAAATTGttgtaacttaaaattttacactcgAGAAGAACTAATTGATCATATTGATTGCAATCATTTCAATTCTGATAAACTGAAgtgtcatttatgtgaaaaaaagCTTGTTAACGCACGAAATTTGAAACGGCATTTAATTGGCGTTCATCAGTTGAAAAAAGAGGAGCTATATCCCTGCGATATATGTCCTGACAGATCATTTTCGAATCGTGTTGATCTTAAGAAACATAAATACGAAGTGCATTCAAGTAGTAAATATGAGtgcttaaaatgtaaaagaacttttaaaggtGAACTAAATTTACGTTTTCATAAGGAAAACATATGTAATAGAGAACCTGCACCTCGTGTTTGTGATTTTTgtggaaaaatatacaaaaattcaagtCGTTTTCATAGACATATGAATGAAGTACACAAAAGTAAGTTAGCAGGGCTTCAGAAATGTGATCAATGCGGAAAATTAGTTAATAGGCTACCGTTTCACAAAAAAATGGTACACCCACCAGAAGGTACAGTAATTAAATGTAAGCAATGTGATAAAGTTTTTAAGACGATTGCTGATAATAATGAAGAGGAGACAAAAGGGGACTTTAAAGTATCTTCTTCAGCGGGAAGTTACAACATAAAATGTGTGAAAGAGGAGCCAAATGAGATATTTGATGTCTTAATTGAACACTTAATTCAATCTGAAAAATCTAATGATGTTGAAGTTAGAAAAATAGACGGAAATAATTTTGTGGATGACGGAAAAAGTGAGGATAGTAAAAGTGATTTGGATGTAAAACCGGAGAAAAacaAAATTAATCCACTTTGGAGCCAGAGTCAGAAAATTCCAAGTAGGAAAAAACGATGTAAAACTAAGATTAAAGAAGATATCGATCCAACAGACATAAAAGACGAACTTGAATTGGATATTTCATCTTTaaagcaagaaaattttaaaaatatagattaCGATACTGATAAAGATCAGGATAATAAGATTTGTAGCTTTATGAATCTCATTTGTGCAAtatgcaatgaaaaatttacatcatTCAATGGAATAAAACGACACTATAATAACATACACCAAACAAGAGGTTTTATAAATtgctgtaaattaaaattttacactcgAGAAGAACTAATTGATCATATTGATTGCAATCATTTCAATTCTGATAGACTGAAgTGTCATTTATGTGACAAAAAACTTGTCAACACCCGAAGCTTGAAGCGACATTTAATAGGTGTTCATCAAATGAAAAAGGAAGAACTTTATCCTTGCGAGATATGCCCAGACAAATCATTTTCTAATCGTGTTGATCTTAAGAAACACAAATATGAGGTGCATACAACTAGTAAATATGAGTGCCTAAAATGTAAAAGAACatttaAAGGTGAAATGAATCTACGACTTCATGaggaaaaaatatgcaatagaGAGCGGGCACCGCGGGTTTGCGATTTTTGtgggaaaatttacaaaagttcaAGTGGCTTCTATAAACATATAAATGAAGTACATAAACGAAAAGTAGAGGGACTTCAAGAATGTGATAAATGTGGTAAATTAGTTAATAGATTagcatttcataaaaaaatggtTCATCCACCTGAGGgtacaataattaaatgtaaGCAATGCGATAAAGTATTGAAAACAATGTTTGCATTACGAAACCATCAAGAAAAAGCTcatagaattgaaaaaagaaatttcttatgtaatatatgtaataaagcATTTAAGAGAAGAAAACTTTTGCTGGAACATACTGCTTGTCATACCGGCCAACCATTATATACGTGTAATTATTGTCCAAGAACATTCCAACATggatcaaattatttaaaacataagaaGAGTCAACATGCAGAGGAATGGGCAGAAGAAAAAAGagttaaattattaagtttaaaggacaataagtga
- Protein Sequence
- MLENACTLCNVESANELINIVESFYEETNVKALITKYLHIQASAQSTSLCIECFEQIKSFHKYYKKVHEVQKYISFRKTNKFSTDKNEEHKTKDLTISPPAKGFIKVESNEVFDVFVGNSIQSEISHDNTSIKVEESDNENDDSKSEGSKNDLEQKLENSKITQLQDESHKTLIREKQYNTKNIEDSNLTIIGDETEPDVSPLKPENSKIDFNVAKDQDNKLYSFMNLNCTMCNEKFTSFNGIKRHYNNTHQTRGFINCCNLKFYTREELIDHIDCNHFNSDKLKCHLCEKKLVNARNLKRHLIGVHQLKKEELYPCDICPDRSFSNRVDLKKHKYEVHSSSKYECLKCKRTFKGELNLRFHKENICNREPAPRVCDFCGKIYKNSSRFHRHMNEVHKSKLAGLQKCDQCGKLVNRLPFHKKMVHPPEGTVIKCKQCDKVFKTIADNNEEETKGDFKVSSSAGSYNIKCVKEEPNEIFDVLIEHLIQSEKSNDVEVRKIDGNNFVDDGKSEDSKSDLDVKPEKNKINPLWSQSQKIPSRKKRCKTKIKEDIDPTDIKDELELDISSLKQENFKNIDYDTDKDQDNKICSFMNLICAICNEKFTSFNGIKRHYNNIHQTRGFINCCKLKFYTREELIDHIDCNHFNSDRLKCHLCDKKLVNTRSLKRHLIGVHQMKKEELYPCEICPDKSFSNRVDLKKHKYEVHTTSKYECLKCKRTFKGEMNLRLHEEKICNRERAPRVCDFCGKIYKSSSGFYKHINEVHKRKVEGLQECDKCGKLVNRLAFHKKMVHPPEGTIIKCKQCDKVLKTMFALRNHQEKAHRIEKRNFLCNICNKAFKRRKLLLEHTACHTGQPLYTCNYCPRTFQHGSNYLKHKKSQHAEEWAEEKRVKLLSLKDNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -