Clon006049.1
Basic Information
- Insect
- Condylostylus longicornis
- Gene Symbol
- -
- Assembly
- GCA_029603195.2
- Location
- JAQSLO010000020.1:1713540-1716339[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.2 7.8e+02 1.6 0.5 2 10 22 30 21 31 0.91 2 13 0.42 45 5.5 0.3 1 21 331 351 331 352 0.92 3 13 0.2 21 6.5 4.4 1 23 358 380 358 380 0.98 4 13 0.0041 0.44 11.8 0.9 2 23 385 406 384 406 0.97 5 13 1.6e-06 0.00017 22.5 1.0 1 23 412 434 412 434 0.99 6 13 5.3e-06 0.00057 20.9 1.8 1 23 441 463 441 463 0.98 7 13 2e-06 0.00022 22.2 0.7 1 23 469 491 469 491 0.97 8 13 8.9e-05 0.0096 17.0 1.0 1 23 497 519 497 519 0.95 9 13 2.8e-06 0.0003 21.8 1.0 1 23 525 548 525 548 0.97 10 13 2.1e-05 0.0023 19.0 1.9 1 23 554 577 554 577 0.95 11 13 0.00062 0.067 14.3 5.3 1 23 583 605 583 605 0.99 12 13 1.1e-05 0.0012 19.9 0.8 1 23 611 633 611 633 0.97 13 13 0.00054 0.058 14.5 0.2 1 23 639 663 639 663 0.92
Sequence Information
- Coding Sequence
- atggaaatttgtgAAAACCTGAATGAATCAATCAAATTTGCTGgAACTCAAGTTGCaccaataaaatgttttttatgcgataaaaattttatggttggtGACGaatcttatttattattcgCGAAAAGATTAGCAGAAAATGAAGAGGACGATGTTCCAATGGCAACTGTATTGAGTTCAGCAGTTGGAGTTGATATAAATGAATCTAGTGCTCATTCAAAAGTTTTATGCCACAattgtaatgaaataattttagaatacgaGCTAATTGAACAACGATacatacaattgaaatttaaattaataaaagattacAATGATGTGGTAAGCAAATATGAAGATACTATTTTGTATGAAGTGAATGATGGTAATGATGACCAAGTTATAATTAACGATGACAATGAAACCACCGAAACAGAATCATCAAAAATAGAATTGACTGCATtagataaaaatgttatttatgaatatttaatggACAATGGTTTTGTAGCTGTTAGTTCTAAAGATgatatcaaagaaaattttattgaattacaagaaaattgtaaaagtgaTCTTTCAAAATTCGAAAATGGCTTAGTTAACGAGATAGAGGAAAATCAGAACAATGATGAACATTTAAAtgttatggaaaataaaaattcagagaATGAAGatgcacattttgaaagaattgttgaacaaaatcaatttactGCAGACGAAAATACATTAGATGATGGGGGAGATTCGCAGTCTTTACAATTCATAACAGATGataaTGCATCTTTAAAGTCTAGCGATTTCACAAGTTTTGATCTTGAATTACATCAGAAACCAAAATCTGTAACAACTGAAGATGCGAGACCATCATTTGCATTCGATGgcgagaaatttttttgtttaatatgtgGAGATAATGATAGTGAAAGTGAAACTAATTTGGCTGAAAGTTTTGACAATAAGAGTATAGCAGTTCACTTAAAAGAAAAGCATGACGTTCTGTTATTTGTGTGCAATTGTTGTGGCGGCGGATTTTCTAAAAAAGCAGATCTTCTTGAGCATGGGAAAAGTGGAAAATGTGGTGAATATGAATGTGAAGTATGTTTCcagaaatttgataatttaaagaaCTGCcgaacacacaaaaaaattcacTCATATTCATTGCAATGTTCAATTtgtaagaagaaatttttatcaaagaaaCTATTGGATGAACATTTGAATGTTCATAGTGGAATTAGGCCTTTTAAATGTTATGTGTGTGGGAAAAATTTTACTGCTAAATACGCTTTGAATTCTCATATGAAAATTCATGCTGAAAGGGAAAGACCATATTCAtgcaataaatgtaataaatcattttttactGCAGCAAATCTCGTACAGCATAGCAAAACACATTCCAGTGTCAAAGAGTTTTCTTGTGATATTTGTGAAAAAAGTTTTGCTACCCAACATAATTTAGAAATACACAAAATTGTTCATACTGGTCATAAGCCATTCTTGTGTAGAACTTGTGGAAAATCTTTTGCCAGGAGAACAGAAATAACGGATCATGAGAGAACACATACTGGAGAAAGGCCTTTTGAATGTGATATATGTGGAATGAAGTTTGCCCAAAGATCAAATTTATCAACGCACAAAAAGTCAACacattttaatgagaaaaaACATAAATGTGATACTTGCGGGAAGAGTTTTAAGAGAAGAAgGTTATTGGATTATCATATACAGGCCGCTCACACTGGAGAAAGACCATACAAATGCGATTCTTGTCATTCTACTTTTGTTTATCCAgaacattataaaaaacattTACGAATCCATTCTGGTGTTAAACCATATTCATGTGAAGTGTGTGGAAAATCTTTCAATTCAAGAGATAATCGAAATGCTCACCGATTTATTCATAGCGACAAGAAACCATATGAGTGTTTAACTTGTGGACAAGGTTTTATGAGAAAACctttattatataatcataTGCAATCAGTTGGTCATATTAACGACACCATAGTTGTAAATCAGCCACGTATAAAACAAACGTTGGAAACGAGTATTAATGATTTAGAAAATggtgaaattcaaataataaaagaagataGCGATTATAAAATGGTTATGGATAGTCGAGTAATATTAAAAGATGATAGTGATGAGATAGACgaaataattttagaagaaGAACATTTAATTGACGGAATGGAGGATAATCAGGAAAATTCTATAAACCAAACATTAAATGAGAATGATGATGATAACCTTATTGATGAGGAAACCTTGCCAGATGAATCCTAttcaattaacaaatatttaaaaaaaataatttag
- Protein Sequence
- MEICENLNESIKFAGTQVAPIKCFLCDKNFMVGDESYLLFAKRLAENEEDDVPMATVLSSAVGVDINESSAHSKVLCHNCNEIILEYELIEQRYIQLKFKLIKDYNDVVSKYEDTILYEVNDGNDDQVIINDDNETTETESSKIELTALDKNVIYEYLMDNGFVAVSSKDDIKENFIELQENCKSDLSKFENGLVNEIEENQNNDEHLNVMENKNSENEDAHFERIVEQNQFTADENTLDDGGDSQSLQFITDDNASLKSSDFTSFDLELHQKPKSVTTEDARPSFAFDGEKFFCLICGDNDSESETNLAESFDNKSIAVHLKEKHDVLLFVCNCCGGGFSKKADLLEHGKSGKCGEYECEVCFQKFDNLKNCRTHKKIHSYSLQCSICKKKFLSKKLLDEHLNVHSGIRPFKCYVCGKNFTAKYALNSHMKIHAERERPYSCNKCNKSFFTAANLVQHSKTHSSVKEFSCDICEKSFATQHNLEIHKIVHTGHKPFLCRTCGKSFARRTEITDHERTHTGERPFECDICGMKFAQRSNLSTHKKSTHFNEKKHKCDTCGKSFKRRRLLDYHIQAAHTGERPYKCDSCHSTFVYPEHYKKHLRIHSGVKPYSCEVCGKSFNSRDNRNAHRFIHSDKKPYECLTCGQGFMRKPLLYNHMQSVGHINDTIVVNQPRIKQTLETSINDLENGEIQIIKEDSDYKMVMDSRVILKDDSDEIDEIILEEEHLIDGMEDNQENSINQTLNENDDDNLIDEETLPDESYSINKYLKKII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -