Clon000197.1
Basic Information
- Insect
- Condylostylus longicornis
- Gene Symbol
- -
- Assembly
- GCA_029603195.2
- Location
- JAQSLO010000001.1:2708643-2712844[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 9.7e-05 0.011 16.9 1.5 1 23 191 213 191 213 0.97 2 15 0.012 1.3 10.3 4.6 1 23 219 241 219 241 0.97 3 15 6e-05 0.0065 17.6 0.1 1 23 357 379 357 379 0.98 4 15 0.00013 0.015 16.4 0.2 1 23 386 408 386 408 0.98 5 15 1.8e-05 0.002 19.2 3.4 1 23 436 458 436 458 0.97 6 15 0.0075 0.81 11.0 0.3 1 23 475 497 475 497 0.94 7 15 0.65 71 4.8 0.2 1 23 503 526 503 526 0.80 8 15 0.026 2.9 9.2 3.3 3 19 535 551 534 552 0.95 9 15 0.00011 0.012 16.8 5.4 1 23 561 583 561 583 0.96 10 15 0.029 3.2 9.1 0.3 3 23 590 610 588 610 0.96 11 15 5.3e-06 0.00057 20.9 0.3 1 23 618 640 618 640 0.98 12 15 0.0011 0.12 13.6 0.1 3 23 648 668 646 668 0.97 13 15 5.8e-05 0.0063 17.6 0.5 1 23 674 696 674 697 0.95 14 15 0.02 2.2 9.6 0.1 1 23 707 729 707 729 0.97 15 15 0.0012 0.13 13.4 0.1 1 20 1245 1264 1245 1267 0.94
Sequence Information
- Coding Sequence
- ATGGACAATCAAGGATTTTCTATACAATGGATACCAGTTGAAAATTCCCTCAACGTTACGAACGAAGAAGTTATTACTATGGAAGCTCGAACGGAAGAAGATAATAATGTGCACAATTATATCGAAATGTCTTCATTGCCAACAAATTTAGATCAAATTGCTGCggaaaatttgatatatatgGCACATGATGGACATATAGATACAATTTGCGAAGATTTAATAGAAGAAGATCCAGATGGTGTGACAGAACATTCAAATCCAAGTCAAATAGTTCAAGTGTATCATTCGAATGgtcataatgataataattcgAGAAATATTAATGAGGTTGTTATTCAACATAACGAAATTGTTAACACGGAAAATGAGAGTGTTGAAGATCAGTCACAATATTTTGAATGCCAAGTAACCACAGAAGAAATTATTACAGATGATTGGGTACAACAGCAGGGTGAggaaagAGTTGAAATATCAGTTGATCAAATAACTGCTGGCGATCCTCACGATACTGATGATATTGATGTTCCTTTACCAACAGATCAAGATGAATATACTGCACTGAGACCGTATCCATGCGATTTTTGCAGtaaacgatttaaaaaaaaacttagtttGATGAATCATATGATGGCTCATAAAAATGATCGTCcacatatttgcaatttttgtggCTGCAGATATATGAGGCGAACCGATTTACTCAATCATTTAAAAATCCATGCCAGTATGGGGGATCATCAAATTGACGAATTTGATGAGAATTataTGCATCTTAATGATCATATAATTGAGACAAAACCAACTGACCGTCGAAGTGCTGATCACTATTATGACCAGATGTGGGATGAAGTTGAGGCTATAACTTCAGAATACGATAGGCGTAAGCCTAGTTCTAAGCATAAACAAAATTCTAACAACAATAATTCTATACTTAcaacaaagaacaaaattagcacaaaatctaaaaaatgtGTGGACCTCAAAAGCGAAATTGTTAAAGCTGAAAAAGTTGTTCACAATGAAGAAGAAATACCCCATTATCCAATTTTAGACGAAAGAAAACCTTTTGTATGTCAAAAATGTGGAATTGCCTTTGCTAGAGAAAAGGCCCTATTATCTCATAAAAggATTCATGCAAATAACTCGCCTTCATTTGAATGTAATAACTGCAATGAAATATTCTATGATATTGATAGTTTAAATGATCATCAACGAGCTCATCGTTTTGAGGAGAGTCATTCAGAATATGAACCTGGACAAGGTGATGAAAGTGATTCAAATGATTCTTCGAAATATGGtgaattttattgtaacatTTGCGGGATGTCATTTCACCGACAAGATTTACTTCGGCGACATTCGAAAAGCCATATAAAAAAGGAGGCTGCAGACAATGGTTATGTCGGGGCGGAAATGCGCCATTGTTGTAATGTCTGTGGTGAGAACTTTTCGGAAGCTCTTGATTTGTTGGCTCATGCTGAAATCCACGCCAGATCACAACCTTTcaaatgtGTACTTTGCGGAGAAACGTTTTTAGAGGAagctacaataaaaaaacatgtatCCAATGTTCATTCAAAAGAATTAACGACAAATTCATGTGTTTTATGTGGAAAGTGCTGTAAAGATAGAAAATCATTGATTAAACATGCTTGGGAACATTCGAAAGAGAAAAATCATTCTTGCTCAAAATGTGGGAAAACCTTCCATAATAAGGCTAGatTGAACCGTCATATGGTGTCACATCGTAACAAAACAGTAATTTGCGAAGTTTGTCAAGAAGAATTTCCAGATGGAAGATCGTTAATGAATCATCGACACTCACATACGAATACATCTGGAAAGTTATTTCCGTGTCAAGAATGTGGTAAAACTTTTGGATCACGTAGTTCGCAACAAATTCATATTCGAATCCATACTGGTGAGCGTCCTTATGGATGTCGTTATTGTTGGAAAGCGTTTGCAGACGGTGGAACATTAAGAAAGCATGAAAGGATTCACACAGgtgAAAAACCATATGCCTGTTCTGTATGTCCAAGAGCTTTTAATCAAAGAGTTGTTTTACGTGAACATATCAGATCACATCATTCTGCTGTTGACGTTAAAAGGGGGACATATTATTGCCCGGTTTGTTCTAGCGATTTATCCAATTCGACTGATTTAATACAACATTTGATTCAACATAGCGATATGCATACAGCTATGAAAAGACAGCCAGTTACCGGTCCACGGAAATATAAACGAAGACGTAAGCTAAAACCTCATGAACTGGAAAGATTGCGGTCAGAACAACGTGAAGGAATTAGCGATATAGATTATTCGGATTTGGATATGGGAGATGTAGATGATTTACTTGGCATAACATCGAAATCTAAAAAGTATAGTCGGTCACCTACTGGGTCTTCATTTATCAAAACGGAAAAAGAACGCGAAAGAACTTTGTCAGCGTCTAGTACAAACcgtattagaaaatattcaaataattcagacaaaataaattcaagtagtTGGCAAACAAAACTAATAACGTCTTCGACAAATGAAGACTATAATTCGGTTATATCAAACTTAGAGAATACTTTGCAAAATATTGATACTCTTGTAGTTAGTAACAATTCATCATCAGTCTTAAATAAACAATCTGTGGTTTCTACGAATTGTAACGAAAATTCGTCAAGACTTCTTTATCCTGATTTGAGTCAACAAATTGAATCAAGTAAAATCGGTTCCACTAATAATACTTATATGAACAATACATCAAAagtaagcaaaataaataacgtcaaaaataaaaaatctaatccTGATAGTTATAATGGTACTTCAAATGAGTACaacaaaaagaaaccaaaaatgaTACACACTCAAAAGACAAGAATTTCTGTTGAAGAAGGAAAGCGTAAAACTCGAACAATGATTACGACAAAACCTGTATCCATACACCGAAATGAAGTTTTCTTTAATGACGATCGGAAATCAGCTGGCGAACTTGACGTAATAATACCGGATATTATAACGAATAGGTCACCGATTCGTGTGAAACAAGAAAACTCATATATAGAAAGCCACCCTTCTGGATTGACTACAGAATCTGATTTATATAACGCACAATTGCTACTAGAAGCTGCTTCAGTTCgcaaagaaatagaaaaatataatccCAACGTTGTTAATGAATTAGATGAGATTTTAAGATCTCCAGATAAAGTAAAGTCTCCTCAGTGTGATGAAATTGAATTGGAacaaaaaactgaaatgaaTTTTCTACAATCTCCGATTTCATCTAATACAGTGTATACAGGTTTTGGTTGCTCAACAAACGAAGAGAGGCGTTCAAGTCGTTCACGTCGTATTTTACCAAATCGCAAATATTTGGAATATGAAACGACACCACCTCGTACAACatttaaatctcaaaaaaattcatctataaaacagaataaaatgtcaaaagtgaaatatgaacaaaaagaaTGTGTTAAAGTTAAGAATGAaccaaaatatgaagaaaatttgcaaataagcAACAGTCATAGCaatattcaagtaaaatttgaaattgaaccTTCAGGTACAGAGATAACcccaaatgaaaaacaaatttctataaatgattTACATAACGCcttaaacaattcaaatataagTGCTGACAGTAGTAATGGAAATGATTGTAATATTTCACCAAAAAAAGACACAATAATAAAGGTTGAAGCCAGTACTAACAGTTTTAAGTGTGAAATGTGCTCAGCTTCATTTTCCGATCGAGCCCAACTTTTGGTTCATGTTCCAATTCATATATAA
- Protein Sequence
- MDNQGFSIQWIPVENSLNVTNEEVITMEARTEEDNNVHNYIEMSSLPTNLDQIAAENLIYMAHDGHIDTICEDLIEEDPDGVTEHSNPSQIVQVYHSNGHNDNNSRNINEVVIQHNEIVNTENESVEDQSQYFECQVTTEEIITDDWVQQQGEERVEISVDQITAGDPHDTDDIDVPLPTDQDEYTALRPYPCDFCSKRFKKKLSLMNHMMAHKNDRPHICNFCGCRYMRRTDLLNHLKIHASMGDHQIDEFDENYMHLNDHIIETKPTDRRSADHYYDQMWDEVEAITSEYDRRKPSSKHKQNSNNNNSILTTKNKISTKSKKCVDLKSEIVKAEKVVHNEEEIPHYPILDERKPFVCQKCGIAFAREKALLSHKRIHANNSPSFECNNCNEIFYDIDSLNDHQRAHRFEESHSEYEPGQGDESDSNDSSKYGEFYCNICGMSFHRQDLLRRHSKSHIKKEAADNGYVGAEMRHCCNVCGENFSEALDLLAHAEIHARSQPFKCVLCGETFLEEATIKKHVSNVHSKELTTNSCVLCGKCCKDRKSLIKHAWEHSKEKNHSCSKCGKTFHNKARLNRHMVSHRNKTVICEVCQEEFPDGRSLMNHRHSHTNTSGKLFPCQECGKTFGSRSSQQIHIRIHTGERPYGCRYCWKAFADGGTLRKHERIHTGEKPYACSVCPRAFNQRVVLREHIRSHHSAVDVKRGTYYCPVCSSDLSNSTDLIQHLIQHSDMHTAMKRQPVTGPRKYKRRRKLKPHELERLRSEQREGISDIDYSDLDMGDVDDLLGITSKSKKYSRSPTGSSFIKTEKERERTLSASSTNRIRKYSNNSDKINSSSWQTKLITSSTNEDYNSVISNLENTLQNIDTLVVSNNSSSVLNKQSVVSTNCNENSSRLLYPDLSQQIESSKIGSTNNTYMNNTSKVSKINNVKNKKSNPDSYNGTSNEYNKKKPKMIHTQKTRISVEEGKRKTRTMITTKPVSIHRNEVFFNDDRKSAGELDVIIPDIITNRSPIRVKQENSYIESHPSGLTTESDLYNAQLLLEAASVRKEIEKYNPNVVNELDEILRSPDKVKSPQCDEIELEQKTEMNFLQSPISSNTVYTGFGCSTNEERRSSRSRRILPNRKYLEYETTPPRTTFKSQKNSSIKQNKMSKVKYEQKECVKVKNEPKYEENLQISNSHSNIQVKFEIEPSGTEITPNEKQISINDLHNALNNSNISADSSNGNDCNISPKKDTIIKVEASTNSFKCEMCSASFSDRAQLLVHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -