Clon005838.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Condylostylus longicornis
Gene Symbol
-
Assembly
GCA_029603195.2
Location
JAQSLO010000018.1:12338322-12371958[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 8e-05 0.0087 17.2 0.2 3 23 245 265 244 265 0.97
2 16 8.9e-06 0.00096 20.2 1.1 1 23 271 293 271 293 0.99
3 16 4.8e-06 0.00052 21.0 2.6 1 23 299 321 299 321 0.98
4 16 8.4e-06 0.0009 20.2 2.2 1 23 331 353 331 353 0.99
5 16 5.3e-06 0.00057 20.9 3.4 1 23 359 381 359 381 0.99
6 16 8.2e-06 0.00089 20.3 1.2 1 23 391 413 391 413 0.99
7 16 5.3e-06 0.00057 20.9 3.4 1 23 419 441 419 441 0.99
8 16 4.6e-05 0.005 17.9 0.4 1 23 448 470 448 470 0.98
9 16 5.5e-07 5.9e-05 24.0 0.7 1 23 476 498 476 498 0.96
10 16 4.6e-05 0.005 17.9 1.3 1 23 505 527 505 527 0.99
11 16 6.7e-06 0.00072 20.5 1.2 1 23 533 555 533 555 0.98
12 16 0.00012 0.012 16.7 0.6 1 23 562 584 562 584 0.99
13 16 1.5e-07 1.6e-05 25.8 1.4 1 23 590 612 590 612 0.98
14 16 0.00054 0.058 14.5 0.3 1 20 618 637 618 640 0.93
15 16 5.3e-05 0.0057 17.7 1.2 2 23 647 668 646 668 0.97
16 16 3.8e-06 0.00041 21.3 1.5 1 23 674 697 674 697 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAACAAATAAAGTCTGAGCCAATGGCATTTTATGCACCACCGCCACCAAATATGGTACAACAAGTAAGACCACCAGATCCACAAATAACGACAGTAGCTGCAACACCACAACAACAAGCAGTACAACAACAGACAGCACAACAACAAGCAGCAGCTGCAGCAGCGGCAGCAGCACAGCAACAGGCAGCAGCAGCAGCACAACAACAGCATTCAACTACAGCAGCTGGCCATCAGCAAGGACAAGCAGGTCAACAGGCGACATCACAAACGGCACAAACAAATCAACATCAACAGTCGGTAATTACAATGatcgataataaaaataatgtcatcCACCCACAAATACTGATCaATGCTGCCACTTCAGGAATAGATATACGTGAAGTACGTGAATGGAGGGCAAGAATAAACGATGTACAAGATCCACAACAATCTGATGAGACTACGACTTCGACTACCACAGATGGTGTCATTTtaccaaaaatgaataaaattgaattagatgATAAAAAACCGCCAACAATATTATTTGCTAATTTTGAAATCGATAAATGGGATCCTAGACGGAAAACCTTTGAGgccCAGCCATCCAGTACACCATTATCAACTGTTTCGGATGGACCAAAACCCGATATATCAAATGTTCAGACAAATGGCTTACCCATATCAATTACGACAACATCAACAACATCTACTAGTCAATCTAGAAGTAAGCCACAAGCATGTAAAATTTGCGGAAAAATGCTATCATCAGCTAGTAGCTATTATGTTCATATGAAATTACATTCAGGGACGAAGCCATTTCAATGCACgGCTTGTGATGCTGCATTTTGTCGTAAACCATATCTAGAAGTACATATGAGAACGCATACTGGTGAAAGACCATTTCAATGCGATCTCTGCCTAAAAAGATTTTCTCAAAAATCATCTTTAAATACTCATAAAAGAATTCATACAGGTTATTGGAGCATGCATAAACCGTTCCAGTGTACTCAATGCAGTGCTGCATTCTGCAGAAAACCTTATTTAGAAATTCATATGAGGACACATACGGGAGAACGTCCGTTCCAGTGTGAAACATGCCTTAAAAGATTTACCCAAAAATCTACACTAAATATTCACAAACGGACGCATTCTGGTTATTGGAGCATGCACAAACCGTTCCAGTGTACTCAATGCAATTCTGCATTCAGCAAAAAACCTTATCTTGAAATCCATATGAGGACTCATACGGGAGAACGTCCGTTCCAGTGTGAAACATGCCTTAAAAGATTCACCCAAAAATCTACATTGAATATTCATAAACGGACGCATTCTGTTCAAGATCGACCATTTCATTGTGAACAATGCCCTGCCGCGTTTGCTAGGAAACCTTATCTCGATATACATATGCGAACTCATACAGGTGAAAGACCGTTTGCTTGTGATATATGTGGAAAACGTTTTACACAAAAATCTTCACTAAATATTCACAAAACTGTGCATACTGTAGGGATACGACCATTTCAATGCACATTATGTCCGGCCGCATTTTGCCGGAAGCCATATCTGGATATTCATCAACGTACACATACAGGCGAGAGGCCATTCGAGTGTGATGTATGTTTAAAACGATTTTCACAGCGATCTACACTAAATATACACAAAAGAATTCATACAgttcaGGGACGCCCATTCCAGTGTGAACAGTGTCCTGCAGCATTTTATCGGAAAACCTACCTAGATATACATACGCGAATGCATACTGGTGAAAAACCATTTTCTTGTGATGTATGTGGCAAAAGATTTACTCAAAAATCGAcattaaatatacacaaaagaATTCATACAGgtgaACGACCGTATGCTTGtgatatttgcaataaaacgtTCGCAGTTAAAAGCTATGTTACAGCACATAGatgGTCCCATGTTTCTGAAAAACCTTTAAGTTGTGATCGTTGTTCAATGACATTTACTAGTAAAACACAATTCGCTGTTCATATTCGTACCCATTCAGCTGGTCCAAATTTTGAATGCAATGTTTGTGGAAGAACATTTATAAGAGATTCATATTTGAttagACATCATAACCGAGTACACCGACAAGAAAGAACAACTGCTAATAGTATACAAACTATAAACGATGTAGCATCTGGGGCTGGTAGCACACCAGAATCTGGTGAAGTTTACGATTCGAATAGCTCGCAAGTTTGCGATTTAAGATATGTCTCAGATTTAAACAACATTAACTCATCACCAGCCGTTTCACAAATATCATCACCAAGTGAATCAAGAACTATAGCGCTAAGTAACCAGGAAGGATCTCGAACTACAACAACATtaacaaTAAATGATGCAAATGGTATGAATATTAATGATCGTATAATGCAAGACCGTACAATACATGAACGGCGAGCACTACAAGAACGAATAGCTTTACAAGATCGTGCATTACAAGAACACAGAGCTTTACAAGAAAGAGCCATACAAGAAAGAATTATTaatgAACGTGGTACTCTCCATGGGAGAGTCCTTCAAGATCGTGTTCTAATACATGAAAGAAATTTACATGCACCAATTACATTACAGCAACAAGGACATGTTAATATAACTATAGCACATGATAAATAA
Protein Sequence
MFEQQIKSEPMAFYAPPPPNMVQQVRPPDPQITTVAATPQQQAVQQQTAQQQAAAAAAAAAQQQAAAAAQQQHSTTAAGHQQGQAGQQATSQTAQTNQHQQSVITMIDNKNNVIHPQILINAATSGIDIREVREWRARINDVQDPQQSDETTTSTTTDGVILPKMNKIELDDKKPPTILFANFEIDKWDPRRKTFEAQPSSTPLSTVSDGPKPDISNVQTNGLPISITTTSTTSTSQSRSKPQACKICGKMLSSASSYYVHMKLHSGTKPFQCTACDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFSQKSSLNTHKRIHTGYWSMHKPFQCTQCSAAFCRKPYLEIHMRTHTGERPFQCETCLKRFTQKSTLNIHKRTHSGYWSMHKPFQCTQCNSAFSKKPYLEIHMRTHTGERPFQCETCLKRFTQKSTLNIHKRTHSVQDRPFHCEQCPAAFARKPYLDIHMRTHTGERPFACDICGKRFTQKSSLNIHKTVHTVGIRPFQCTLCPAAFCRKPYLDIHQRTHTGERPFECDVCLKRFSQRSTLNIHKRIHTVQGRPFQCEQCPAAFYRKTYLDIHTRMHTGEKPFSCDVCGKRFTQKSTLNIHKRIHTGERPYACDICNKTFAVKSYVTAHRWSHVSEKPLSCDRCSMTFTSKTQFAVHIRTHSAGPNFECNVCGRTFIRDSYLIRHHNRVHRQERTTANSIQTINDVASGAGSTPESGEVYDSNSSQVCDLRYVSDLNNINSSPAVSQISSPSESRTIALSNQEGSRTTTTLTINDANGMNINDRIMQDRTIHERRALQERIALQDRALQEHRALQERAIQERIINERGTLHGRVLQDRVLIHERNLHAPITLQQQGHVNITIAHDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00160971;
90% Identity
-
80% Identity
-