Clon004044.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Condylostylus longicornis
Gene Symbol
-
Assembly
GCA_029603195.2
Location
JAQSLO010000013.1:6952806-6968741[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 40 0.0029 0.31 12.3 1.1 1 23 113 136 113 136 0.96
2 40 0.0036 0.39 12.0 0.1 3 23 143 164 142 164 0.93
3 40 0.0018 0.2 12.9 2.3 2 23 174 196 173 196 0.95
4 40 0.00066 0.072 14.3 0.6 2 23 215 237 214 237 0.95
5 40 2.1 2.3e+02 3.2 2.6 1 20 270 289 270 297 0.96
6 40 1.6e-05 0.0018 19.3 2.5 1 23 390 412 390 412 0.97
7 40 1.7e-05 0.0019 19.2 3.2 1 23 419 442 419 442 0.93
8 40 1e-05 0.0011 20.0 1.8 1 20 448 467 448 469 0.95
9 40 0.015 1.6 10.0 0.8 1 23 485 508 485 508 0.96
10 40 0.00032 0.035 15.3 0.5 1 23 544 566 544 566 0.96
11 40 0.001 0.11 13.6 1.3 1 23 572 594 572 594 0.98
12 40 1.9e-06 0.00021 22.3 2.8 1 23 600 622 600 622 0.98
13 40 3.6e-06 0.00039 21.4 2.0 1 23 628 650 628 650 0.99
14 40 0.0067 0.73 11.1 0.2 1 23 655 678 655 678 0.96
15 40 0.13 14 7.1 0.3 1 20 768 787 768 791 0.76
16 40 0.0031 0.33 12.2 1.2 1 23 796 819 796 819 0.93
17 40 7e-05 0.0076 17.3 2.7 2 23 829 851 828 851 0.91
18 40 0.00043 0.046 14.9 0.3 3 23 875 896 874 896 0.95
19 40 8.5e-05 0.0092 17.1 0.8 1 23 1053 1075 1053 1075 0.97
20 40 0.0018 0.19 12.9 1.7 1 20 1082 1101 1082 1105 0.94
21 40 3.7e-07 4e-05 24.5 2.8 1 22 1111 1132 1111 1132 0.96
22 40 0.17 19 6.7 0.8 1 23 1148 1171 1148 1171 0.96
23 40 0.0014 0.15 13.2 5.5 1 23 1207 1229 1207 1229 0.96
24 40 0.003 0.32 12.2 0.9 1 19 1235 1253 1235 1255 0.93
25 40 0.00013 0.014 16.5 0.6 1 23 1361 1383 1361 1383 0.97
26 40 0.0018 0.2 12.9 0.3 1 23 1390 1413 1390 1413 0.97
27 40 0.004 0.43 11.8 5.5 1 20 1419 1438 1419 1440 0.90
28 40 0.035 3.8 8.9 5.6 1 21 1467 1487 1467 1488 0.94
29 40 0.0057 0.62 11.3 1.4 1 19 1495 1513 1495 1516 0.90
30 40 0.00015 0.016 16.3 1.5 1 23 1637 1660 1637 1660 0.97
31 40 0.3 33 5.9 6.7 1 23 1833 1856 1833 1856 0.96
32 40 0.00018 0.019 16.1 0.6 1 23 1880 1902 1880 1902 0.98
33 40 1.8e-05 0.002 19.2 2.7 1 23 1911 1934 1911 1934 0.95
34 40 3e-05 0.0033 18.5 1.6 1 21 1940 1960 1940 1961 0.95
35 40 0.029 3.1 9.1 0.1 1 23 1978 2001 1978 2001 0.93
36 40 0.0019 0.2 12.9 1.1 1 23 2036 2058 2036 2058 0.95
37 40 0.0064 0.7 11.2 1.3 1 23 2064 2086 2064 2086 0.98
38 40 2.1e-07 2.2e-05 25.3 0.9 1 23 2092 2114 2092 2114 0.99
39 40 0.00017 0.019 16.1 2.5 1 23 2120 2143 2120 2143 0.98
40 40 0.0016 0.17 13.1 0.8 1 23 2148 2171 2148 2171 0.96

Sequence Information

Coding Sequence
atgtataacatatttaaacCAAAACTTCCTCCCAATTTTGAACTGCTAGAACTTGAAAGTGTGTGTCGAATTTGTTTACATTGCACAAGCAATTTGTTACCATTATTTAACAACGAAATAGATTCGCTTGTGTCGGAGTTTTTACCGGAGaagttaaataaaaaaccattGCATCCCCatcaaatttgtttgaaatgttTTGAGGAAGCTAAAACTGCTTACGTTTTCAAAAAACAGTGCGAATATTCTGATAAATTGATTAAATCAATACTGAATGAAGCTGACTTTGATAAAACCTTCGAGAAACAAACCCAAACCGATTTCACAAACTTTATGTTTCCGTGCGAGAAATgtgataaaaaatatgaatttttagaaaGCTTAAGAGAACATCGTACAAAAGAACATCAAAAAACTCCTAATATATGCCGAAAATGTggaaaagtttttacaaaaattgttgcGTTAAGAGATCATTTGGGTTCAGCTCATCCAGAGCTTGGCTTCCCTTGCAATAATAAATGTcatttatgtgaaaaaatttttacaagaaaagaTATTCTTAAAAGACATCTACTTAATATTCACAATTAcgaagaaaaatttcaagaaaggGAGAATGTGCAGGATAATTTTTGTATCAAATGCCAATTATGTGAAAAAGAATTTGCTCAAGTAAGTCATTTAAAAGAACATTTAACCATTGACCACAAAACAGAGCAAGTAGTTATTGAAAAAGATAATATGGAAGTCAATGAGAAAACGCAgcagaaaaatttcaacatattaaaaattgataaatatgaATTCTCTTGTGAAAATTGTTTGCAAAAATATGAGACTGAAGATGATTTAAAATATCACAAGTGTCCCACTAGTTTTATTTGTGAAAAGCCTATGGAAACCGGTTCCCAAAACGAGctgcatttaataaatttaagcgaagataatgatgaaataaataatgcacgtgaatttaaatatgaagaCAGTTTGAAATCTGATGATGAAGATTTATctggaaaatgtaaaaaaaatttgttgggAAAGTtaaacattgaaattaaaaatgaaactaaaacCGCACAAGATATTGTGAAATCAAtggtaataaaatcaaaaaacaaaattcctagAATTAAAGTTAAACCCAACTCTAACGGAAAGTATGAATGTGATGTATGCAAAAAAGATTTTACAAGGTCAGCTCATTTAACACGACATAAACTCTTGCATTCTGGTGACCCTAAACCGTATTCGTGTACTATGTGTTCTAAATCATTTTCCAGATCAGATCATCTAAAAAATCATGTAAGTGGGTTTCATGCCGATTTAAGACCATTTAAATGTGTTATATGTCACAAAGCATTCACCAGGAATGAGCATCTGAAACGTCATGTCAGTCTTCTAACTTGTTCAACAGAAAGAAAAAGACGTAgaagagataaaattttttcatgtgaaatatgtatgagaaaattttcgACGGAAAAATATGTTCAAGATCATATGTCTATTCAACATAACGAAACTAGGGAATTTACATGCAAatattgcaaacaaaaaataattggtgCAACTGAATATAAAAAGCATTGTAAGGGACACTATACTGCTCCGACTAAGCAATTTCTTTGTTCAGAATGTGGTGGAAGTTtcacaaaattacaatatctCATGATACATATAAGAAGACACACTGGTGAAAAACCGTACAAATGTCGATATTGCGATAAAGCCTTTCCTAGAACAACTGATCAATACGCACATGAAAGATCACATACTGgagaaaaaaactttcattgTACTAATTGTCCGAAGGCCTTTTCAACATCATATAAATTACGAGTTCATATGCGAATTCACACAGGCGAAcgACCGTATAAATGCTTGTATTGTCCCAAGGCTTTTGCGCAAAATAATGATTTGAAAGCACATCATAGGCGCCATACTGGCGAACGATTTTATTGTGATGTCTGTGGCGTGGGGTTCGTTCAAATGTATGTTTTAAGACAACATAAACGGCAAGCTCATGGTATTGATGAGCCTCGGAACAGGAATTCTCTTTTAGAAAATAGAGACAAACAAATACCCGaagaacaaataatttcagatgGTTTATGCCGCAGGCCTTTACATCCTTACCGAATATGCGTTGAATGTTTTGATGAAGCAAAAGTTGCTTACATATTTAAGAAGCAATGTGAGTATGCAgataaactaattaaattagtaTTACATGAACCGGATATTAACAAAACTTTCGAAAAGGAAACTCAAACCGATTTTAGCAAATTTATATATCCATGCGAAAAgtgtgataaaaaatttgagtcATTGGAAATTGTAAGGGAACATAGGGTAAAAGAACATAGTAATACTCCACATGAATGTCGtatttgtactaaaaattttaccaaacttGGGACTTTGAGGGATCATTTAGGTTCTGTACATCCAGAACTTGGTTTTTCCTGcagaaataaatgttttttgtgtaCAAAAAGTTTTACTAGAAAAGAGCATTTAAGAAAACATATTGTTGGAATACATAAAGCTAATAAAACTTTGAATATTGATGAACGAATTAgaatagaaaaagaatttttaagggGAAATGACTGCCAGTTATGTACCGAGTCTTTCAACAACAAAGAAGATTTGAGGAAACATGTAATTAGCGCCCATAATTCAAACGAAAAATTTCTTTCCCAATACACTTTTGAAACAAATGAAACGTTACCAGAAAATAAGTATGAAATTACTcccgacattttaaataatttggaaattttgaatgATCTAAAAAATGAGCTGCCATTACCTTTTCAACCAGAaaattTAGATCAACCACCTAAACCGCCGGAGAAAATAGAAATCACTGAACCTTTAAATACTAAGTTAGAGGATGATCCACCTGATGAAGATCCACTCATGTCTTTTGAATGCGTTTCAGTGCTTGATGAAAATCCTGATTTGGAAGAGGAATACGATGAAGATGAACAAGATGAGAATGAGAAGCAGaacaagaaagaaaatgaaaaacaatccGCTAAGCAGGCGATAAAAGTTACAAAAGAGCTTGTTAAATCAATGATATCGGAGTCTAAAAAGCAGATCGCAAATATTGAAACCAAACCAAATGAAGACGGGAAATATGAATGCGAGATTTGCAAAAAAACATTTGATAAGTCGGCAGATTtgataaatcataaattttcacattCCGGAGTTACAAAGCCTTATGTATGTACTATGTGCTCCAAATCTTTTCTAAGACcagacaatttaaaaaatcatgttaACTGCGTTCATGCTGGCATAAGACCTTTCAAATGTTCAATTTGTCAGAAATCTTTCACTCGCAATGAGCATCTACAACGGCATATGAATCGGCTAATAtgtttaaacgaaaaaaaaactcgtCCATACGAAAGATTGTTTCCATGTGAGATGTGTAAAAGCAAATTTACAACAGAAAAACGTGCTAAAGATCATATGGCAATGCAACATGATGAAACTAGAGAGTTTACATGTAAAacttgttcaaaaaaaattattggaaccAGAGCATATAAAAAACATTGTAGAGCACATTATACTGCACCGGAAAGAGAATATCTTTGTAGCGAATGTGGTAAAAGTTTCACAAAATACCATTGTTTTACTATACATGCCAGAATGCATACTGGAGAGCGGCCATATAAATGTAGATATTGTGGAAAGGCTTTTCCAAGGAGTACAGATCAACATGCACATGAAAgTTTAGATCGCCCATCTAAACCGCTGGAGAAAATAGAAATCACTGAACCTTTAAATAATGAGTTAGAAGATGATCTACTTGATGAAGATCCACTCATGTCTTTTGAATGCGTTTCAGTGCTTGATGAAAATCTTGATTTGGAAGAAGAATACGATGAAGATGAACAAGATGAGAATGAGAAgcagaacaaaaaagaaaatgaaaaacaatttgcTAAGAAGACGATAAAAGTTACAAAAGAGCTTATTAAATCAATGATATCGGAATCTAAAAAGCGGATTGCAAAGATTGAAACCAAACCAAATGAGGACGGGAAATATGAATgcgaaatttgcaaaaaaacatTTGATAAGTCGGCAGCTTTGATAAATCATAAGTTTTCACATTCCGAAATTGCAAAGCCTTATAAATGTACTCTGTGTTCCGAATCATTTCTAAGACCAGTCgatttaaaaaatcatgttaATAGTGTTCATGATGGCATAAGACCTTTCAAATGTTCAATTTGTCAGAAATCTTTCAAACGGAATGAGCATCTACAATGCCATAAGAATCGACAAATATGCTTGaacgataagaaaaaaaagaaaattattggaaCTAGAACAGCACATAATACAGTGCCggaaagagaatatttttgttcccaATGTGGTAAGAGTTTCACAAAATGCAATTGCTTTACTATACACGCCAGAATGGACACTGGAGAGCGGCCATATAAATGTAGATATTGTGGGAAGGCTTTTCCGAGAAGTACAGATAAACATGTACATGAAAgCAAGTTGTATCAACCATATACCCCAACAGAATTAAGTCCTGAAAACGTTGAAAATGTTTGTCgaatttgtttacaaattgATATTCCATTGTCCTCAATTTTTAGGAATGATGTTGATAAGATGATTTCTGAGTTCGTATCTgataagATTGATGAGCAAGACCAGTTTCCACATCAGATATGTGAAAAATGTCTAATAGGTGTGAAAGAAGCGTAcgcttttaaaaagaaaatcgaatATTCTCATGAAGTTATCAAAAAACTCTTAAGTGGGAAAAGGTCGATTAGAATAACTAGAAGAAACATAGGCCAAGTAAATTGTCAACTGAATATCTCTCTCCAAAATCCTTCCAGCAAAACTTGTTTTCAATGCCTTATTTGCAATCGAAATTTAAAACGAAAGAACCTTTTAAAAAAGCATATGGAAAAAGCACACAAATTTCTTAGATTCGATGAAGAATTGGACAGTATCTTTGATAAcgggaaagaaaaaattaaaaaggctGATAGCGAAAATAACATGGAGCAGGAacCCCTTTCTACGTTTCTGGAAGTAAAGGAGACAGACAAGGATGGAAAACATagcattgtaaaatttgaaaatgaaactaATGTAAccaattcaaatcaaataaatataaaaacacaatatgCAAAAACAGAAAAGGATTTGAAACTGCATTTAGAAAAACAGCACCAAAAGAGCGGTGCTAATACTGTTGATATTAAAGCGGAAATTCTTTTGGAAGAAAATTCGAATGTAAATGATTCGTTTGATTTCGGATGCTTAACTGCAGAACAATCGGAAGAAATAAAGGATCAGGacttaactattttaaataacgatATTTCAAGCGACTATCATGAAAATAATTCCTCAACTGCAAGCTTAGATGTATCCCAAGCAGGAAAtgtgaaatcaaataaaactcGACCGAAGACCATCAATGCGTACAAATGCCACATAtgtgaaaaagaattttcttgtaGAACAACAACCAGACggcatttgaaaaatattcataaatttgaaaatttcgaagATGATATTTGGCTATCAAAAGTGTACCAGAAAACTATTGaggcaaaaatttatgaatgtgaaatttgtaaaaaagtcTATGCTAAAACTCAAGACTTGTTTCGTCATCAACTATTGCATACTGGCAATCCAAGAGCGAAACCGTATTCGTGCACAATGTGCTCAAAGTCATTTTCCAGGTCAAATCATTTGAAAACTCACGTGAATGGAGTTCACGCAGATTTAAGGCCATTTAAATGTTTAACATGCGAGAAATCGTTTAGACGTACTGAACATTTAAAAAGGCATATTTTGATCTGTTCAACAGGAAGGAAAAGGCGTGCCAAAAAACCAACCGAACATCGTTTTCCTTGTGAGGTGTgtctaagaaaattttcaacagaaAAAGCCGTACAGGATCATATTGACCTAGAACATAATGAAACCAGAGAATTTTCTTGCAAATATTgttcagaaaaaattattggttcAACTGAATATAGAAAACATTGTAAGGAACATTATAAGACTTCCAAACAATTTCTTTGCTCTGAATGTGGTGgtagttttagaaaattacaggattttaaaattcatttaaaacgaCATACAGGCGAAAAACCGTTTAAATGTCAATATTGTGATAAAGCCTTCTTGAGACCAGCAGACCAACATGCGCATGAAAGatCGCACACtggtgaaagaaattttaaatgtacgaATTGTCCAAAAGCGTTTTCAACTGCTTACAAATTGCGAGTTCATATGCGAATTCACACAGGCGAAcgGCCTTATAAGTGTTCATATTGTCCTAGGGCTTTTGCAAAAACTGGTGACCTGAAAATTCATCATAAGCGTCGACATACTAGCGAGCGTTTTTATTGTGATCTTTGTGATTTAGGATTTGttcaaatgtttaatttaagaCAACATAAACGTCAGGTTCATGGTGTCGACGAACCACCTATTAGAACTAATTTCGTACATAAAGTTGAATTGCCGCCAAAGGAATCGTCTAATAATATTACCACTGAGGCGGAAAATAGAAGTTTAAACAATGGTCTTTCATCCCAAGCCGAAGACGAAAAAAATGAgcaaggaaatattaaaaatgaaacaatctGTGAGGTAAAGGATGACAATTAa
Protein Sequence
MYNIFKPKLPPNFELLELESVCRICLHCTSNLLPLFNNEIDSLVSEFLPEKLNKKPLHPHQICLKCFEEAKTAYVFKKQCEYSDKLIKSILNEADFDKTFEKQTQTDFTNFMFPCEKCDKKYEFLESLREHRTKEHQKTPNICRKCGKVFTKIVALRDHLGSAHPELGFPCNNKCHLCEKIFTRKDILKRHLLNIHNYEEKFQERENVQDNFCIKCQLCEKEFAQVSHLKEHLTIDHKTEQVVIEKDNMEVNEKTQQKNFNILKIDKYEFSCENCLQKYETEDDLKYHKCPTSFICEKPMETGSQNELHLINLSEDNDEINNAREFKYEDSLKSDDEDLSGKCKKNLLGKLNIEIKNETKTAQDIVKSMVIKSKNKIPRIKVKPNSNGKYECDVCKKDFTRSAHLTRHKLLHSGDPKPYSCTMCSKSFSRSDHLKNHVSGFHADLRPFKCVICHKAFTRNEHLKRHVSLLTCSTERKRRRRDKIFSCEICMRKFSTEKYVQDHMSIQHNETREFTCKYCKQKIIGATEYKKHCKGHYTAPTKQFLCSECGGSFTKLQYLMIHIRRHTGEKPYKCRYCDKAFPRTTDQYAHERSHTGEKNFHCTNCPKAFSTSYKLRVHMRIHTGERPYKCLYCPKAFAQNNDLKAHHRRHTGERFYCDVCGVGFVQMYVLRQHKRQAHGIDEPRNRNSLLENRDKQIPEEQIISDGLCRRPLHPYRICVECFDEAKVAYIFKKQCEYADKLIKLVLHEPDINKTFEKETQTDFSKFIYPCEKCDKKFESLEIVREHRVKEHSNTPHECRICTKNFTKLGTLRDHLGSVHPELGFSCRNKCFLCTKSFTRKEHLRKHIVGIHKANKTLNIDERIRIEKEFLRGNDCQLCTESFNNKEDLRKHVISAHNSNEKFLSQYTFETNETLPENKYEITPDILNNLEILNDLKNELPLPFQPENLDQPPKPPEKIEITEPLNTKLEDDPPDEDPLMSFECVSVLDENPDLEEEYDEDEQDENEKQNKKENEKQSAKQAIKVTKELVKSMISESKKQIANIETKPNEDGKYECEICKKTFDKSADLINHKFSHSGVTKPYVCTMCSKSFLRPDNLKNHVNCVHAGIRPFKCSICQKSFTRNEHLQRHMNRLICLNEKKTRPYERLFPCEMCKSKFTTEKRAKDHMAMQHDETREFTCKTCSKKIIGTRAYKKHCRAHYTAPEREYLCSECGKSFTKYHCFTIHARMHTGERPYKCRYCGKAFPRSTDQHAHESLDRPSKPLEKIEITEPLNNELEDDLLDEDPLMSFECVSVLDENLDLEEEYDEDEQDENEKQNKKENEKQFAKKTIKVTKELIKSMISESKKRIAKIETKPNEDGKYECEICKKTFDKSAALINHKFSHSEIAKPYKCTLCSESFLRPVDLKNHVNSVHDGIRPFKCSICQKSFKRNEHLQCHKNRQICLNDKKKKKIIGTRTAHNTVPEREYFCSQCGKSFTKCNCFTIHARMDTGERPYKCRYCGKAFPRSTDKHVHESKLYQPYTPTELSPENVENVCRICLQIDIPLSSIFRNDVDKMISEFVSDKIDEQDQFPHQICEKCLIGVKEAYAFKKKIEYSHEVIKKLLSGKRSIRITRRNIGQVNCQLNISLQNPSSKTCFQCLICNRNLKRKNLLKKHMEKAHKFLRFDEELDSIFDNGKEKIKKADSENNMEQEPLSTFLEVKETDKDGKHSIVKFENETNVTNSNQINIKTQYAKTEKDLKLHLEKQHQKSGANTVDIKAEILLEENSNVNDSFDFGCLTAEQSEEIKDQDLTILNNDISSDYHENNSSTASLDVSQAGNVKSNKTRPKTINAYKCHICEKEFSCRTTTRRHLKNIHKFENFEDDIWLSKVYQKTIEAKIYECEICKKVYAKTQDLFRHQLLHTGNPRAKPYSCTMCSKSFSRSNHLKTHVNGVHADLRPFKCLTCEKSFRRTEHLKRHILICSTGRKRRAKKPTEHRFPCEVCLRKFSTEKAVQDHIDLEHNETREFSCKYCSEKIIGSTEYRKHCKEHYKTSKQFLCSECGGSFRKLQDFKIHLKRHTGEKPFKCQYCDKAFLRPADQHAHERSHTGERNFKCTNCPKAFSTAYKLRVHMRIHTGERPYKCSYCPRAFAKTGDLKIHHKRRHTSERFYCDLCDLGFVQMFNLRQHKRQVHGVDEPPIRTNFVHKVELPPKESSNNITTEAENRSLNNGLSSQAEDEKNEQGNIKNETICEVKDDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-