Clon004971.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Condylostylus longicornis
Gene Symbol
-
Assembly
GCA_029603195.2
Location
JAQSLO010000016.1:3379863-3384563[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 38 9.6e-05 0.01 16.9 4.3 2 23 460 481 459 481 0.97
2 38 7.9e-06 0.00086 20.3 1.0 3 23 489 509 487 509 0.98
3 38 1.6e-05 0.0017 19.4 1.4 1 23 515 537 515 537 0.99
4 38 6.4e-07 7e-05 23.7 1.4 2 23 580 601 579 601 0.97
5 38 9.6e-05 0.01 16.9 1.3 3 23 609 629 607 629 0.98
6 38 1.4e-05 0.0015 19.5 1.5 1 23 635 657 635 657 0.99
7 38 1.9e-05 0.0021 19.1 1.9 2 23 671 692 670 692 0.97
8 38 0.0003 0.032 15.3 5.1 1 23 698 720 698 720 0.97
9 38 0.017 1.8 9.9 2.6 1 23 726 748 726 748 0.98
10 38 9.4e-05 0.01 16.9 0.2 1 23 753 775 753 775 0.98
11 38 4.7e-06 0.0005 21.0 0.9 1 23 781 803 781 803 0.99
12 38 0.00011 0.011 16.8 0.5 1 23 809 832 809 832 0.97
13 38 0.00035 0.038 15.1 3.6 1 23 838 860 838 860 0.99
14 38 4.8e-06 0.00052 21.0 0.1 1 23 866 888 866 888 0.99
15 38 9.2e-06 0.00099 20.1 0.4 1 23 894 917 894 917 0.98
16 38 4.6e-06 0.0005 21.0 3.9 1 23 923 945 923 945 0.99
17 38 0.0013 0.14 13.3 5.2 1 23 951 973 951 973 0.98
18 38 5.6e-05 0.006 17.6 1.7 1 23 978 1000 978 1000 0.99
19 38 1.3e-06 0.00014 22.8 1.5 1 23 1006 1028 1006 1028 0.98
20 38 6.1e-05 0.0066 17.5 0.1 1 23 1034 1057 1034 1057 0.98
21 38 1.2e-06 0.00013 22.9 1.3 1 23 1063 1085 1063 1085 0.99
22 38 1.7e-05 0.0019 19.2 1.2 1 23 1091 1113 1091 1113 0.99
23 38 0.0027 0.29 12.3 2.9 1 23 1118 1140 1118 1140 0.99
24 38 5.8e-06 0.00063 20.7 1.9 1 23 1146 1168 1146 1168 0.99
25 38 0.00052 0.056 14.6 0.2 1 23 1174 1197 1174 1197 0.97
26 38 2.1e-06 0.00022 22.1 1.4 1 23 1203 1225 1203 1225 0.99
27 38 3.8e-06 0.00041 21.3 2.3 1 23 1231 1253 1231 1253 0.98
28 38 0.00061 0.066 14.4 0.1 1 23 1258 1280 1258 1280 0.98
29 38 2.9e-06 0.00032 21.7 0.1 1 23 1286 1308 1286 1308 0.99
30 38 0.003 0.33 12.2 0.8 1 23 1314 1338 1314 1338 0.97
31 38 4.6e-05 0.005 17.9 4.3 1 23 1344 1366 1344 1366 0.98
32 38 8.5e-05 0.0092 17.1 3.4 1 23 1372 1394 1372 1394 0.99
33 38 2.7e-05 0.0029 18.6 1.7 1 23 1400 1422 1400 1422 0.98
34 38 1.6e-05 0.0017 19.4 1.9 1 23 1428 1451 1428 1451 0.98
35 38 0.0021 0.23 12.7 2.2 2 23 1458 1479 1457 1479 0.97
36 38 7.6e-05 0.0082 17.2 0.4 1 23 1485 1508 1485 1508 0.98
37 38 8.4e-05 0.0091 17.1 1.3 1 23 1514 1536 1514 1536 0.99
38 38 0.00014 0.015 16.4 4.8 1 23 1542 1564 1542 1564 0.99

Sequence Information

Coding Sequence
ATGGATGAGAACGTTTTCCTTAATCGTCATATTTCACAAATACAACCACTGGATATGTTATGGACTTCCCAATCGGATATGCAAGACTGTTCTTCTTCAAATTCTACTCAAGTCATACGACCACAGACTAATCAATGGCAACATTCCATTCAACCATCTGTTAATTATGAAGTTAGTCCAcgtatatctaaaaatattgaaagtacaAATTCTTGGTCGACATCAGTTCAAAATTACCAACTTATAAGATCTACTTCACGAAATGAAGAGAGTTCTAATGAGTGGACATCACGAAGTGCAACCCCGCAACAATACCCTATGCACCCACCGCCAATACCACCACCAAGGACAGAAAATCGAAATACGTGGACTGCCGAAATAGCACAGGAACAATTTCCACCACTTCCTCAAATTACTTCATCTCATCATTTACAATCTAATTATTTGTCCTCCACCCCAAACACTGTTGCAGCTCcgaattcttcaaattttcatacTGCACATCCGAATATTCAAACAACTCAAATTTCTACTCAATCTTCTAATTCCCCAGTATTTGAAAACTCTTCTTTATCTTCACATCTTTTGCCAccttttcatttaaacaaaactACACTTATGAAGTCGACTAATGCTATGAGCTCAAGTGAAATGCTGCAGCAAGCCAAAATAGCTgtttcttcaaataaaaataccGTTGAAACTACTAGTACGTGGATTCCCCCGACGATtatcagagaaaaaaaattaaataactttaaagatttgacaaaagaaaaagtaaattatgcGTTCCaagttaaattgcaaaaaatacaagaaaataccAAAAAAGTATGTGAACAAGAGTCTTCATCTAacgatttgaaaattatagaaattgatGATAAGGATGATGATGTATCGATTGAAGGAGGCGATTCAATATGTTGTACAGAAATTGTAAGTAGGGAAAgtctatatgaaaaaaatgtaacTGAATTAAACAAAGATTTAAAAAACGAAGTGTCTTTAAAAAATGAGactttttttgatgaaaatataaCTCAAGTATATAATTCGGAAAATGATATCACCGCATCgaacaaaaatttgataaattttgaagagagtgttagtaaaattaatgaaaatgagaGAAAGTCGCAAAATCAATTAGAAAATAAGTCAGTTGTAGTTCCCAAGCCTGAAGAAGCTCACAAAGTCTCTTACCCGCATCGTGGAGATGATCCTAAGCTGCGACTTAAGCCTTtagtgaaaattgaaaaaatgccAAGACTAGTTTTAGAGAAATACTTTCCAAGATTTTTACTTGCGAAAGACTTTTTACAAGATTTAGTGCGGTATAAGAAaggtaagaaaataaaatttcggaaGCAATGTAAGCTTTGTCACCGAAAGTTTTCCACTCCCACTTATCTACGCATACATTTAAGACAACATACTGGAGAAAAGCCATTTGGATGCAATTTTTGTGGTAAATTCTTTGCAGATAAAAGTGCTTTGAATACTCATACAAGAAGTCATACTGGCGAAAAACCCTACAAATGCGAGCAATGTGATTTAAGTTTTGCTCATTCCGGAAGTTTGAAGTGGCATGCAAAGAAACACGATGATCCAGATGCTAAATTTCGTACGAAATGTTTATCGAAAAGTTTAACTaacgaatattttattgtttctgaTAAACCAAATGCTATAGATCCAACAGAAATGTCAGAAATGCTAACTACGAAAACTtgtaatatttgcaataaaagtttttcttcatctggttatttaaaagttcatttaCGCTCACATACTGGCGAAAAACCGTTTGGCTGCAAAACTtgcggaaaattttttataagcagAAGTGTTTTGCGAATGCATTTGCGAAGTCATACTGGAGAAAAACCATATCAGTGCGAAACTTGTGACGTAAGTTTTTCATATTCTAATAGCTTAAAGGAGCACTTAAAAAAACACGAAGATCCGAATTTTAAAGTTGAAGAGTTCTGTCAAAAAGAATGTCAATACTGCCAAAGAATTTTTACTAGCTCACGATATTTAAGGGCTCATTTAAGGAAACATACGGGAGAAAAACCTCACCGTTGTAAACTTTGTGGAAAACATTTtatgtatgcaaaaaatttacaaacccATTTAAAAGGTCATAGCGGAGAAAAACCTCACAAATGTGACAAATGCGGTTTGGGATTTTTACATTTAGTGTCGCTTAAATCAcacttaaaaatacataatggaATCGGTTTTAGATGTAATATTTGCGGTTTGCAGTTCCCAACACTTTCGAAAGCAAGAATTCATATGAGGGGTCACAGTGGTATAAAGCCTTATAGATGTAAAATTTGTGGAAAAGGCATTTCAACCGCTAGCAGTTTTAGCTATCATATGAGAACTCATACAGGCGAAAAGCCGTTTAAATGCGAGGAGTGTGATGTTTCCTATAAATCTTCAGGACAGTTAATATTGCACAATCGTATGAAACATACTGGTGAAAGACCGTATAAGTGCAGTTATTGCGAAAAAACGTTTTTCCAATCGCAATCTATGAAATACCATGAGAGGGTACATACTGGTGAAAAACCTTTTAAATGCGAAATTTGCGGAATTAATACGGTTACATCTAGTTCATTGGCAGTTCATATGCGGAGTCATACCGGAGAGAAACCATATAAATGCAATGAATGTGATGCGGCATACACGAATTCTGGCCAATTACTCATACATCGTAGAACCAAGCACACGGGAGAAAAACCATTTAAATGTACTTATTGCGATAAAGCATTTTTTCATTCTGCTGCTTTAAAATCCCATACAAGAACACATACTGGTGATAAACCATTCAAATGCAGCAAATGTGATTCTCGTTTCAGTCAGTCGTGTTCTTTGCGTAACCATGTAAAGCTTCATGATGGAACTGCATTCAAATGCGAATATTGCAATAAACTTTTTGCAACAGAATCTCAAGTTCGAACTCATTTAAAATCACATACTGGGGAGAGATCTCATAAGTGTCAAATATGTGGACAGACTTCTACAACGTCAAGCTCGTTAGCAATCCATATGAGAACCCATACAGGTGAGAAGCCCTATCAGTGCAAAGATTGCGATGATGCTTTTGCTACCTCAGGGCAACTAGTTTTGCATATACGAGTAAAGCACACTGGGGAACGTCCGTTTCAATGCACTTATTGTGAGAAAGCCTTCTTCCAGTCAACTGCACTTAAAATTCATATCCGTACGCATACAGGTGAAAAACCATATAAATGTGACAAATGTGACATGAGCTTTGCGTATTTAACGAGTTTGAAATCACATCTTAAAATCCACGATGGTATTGTCTACAAATGCAAATATTGTCAAGATACATTCCCATCGCTTCGTTATTATAGAATACATTTAAAAACACATACAGGTGGAAAACCATTCAAATGTGATGTATGTGGTCACCGAACATCAACATCCAGTAATATGGTAATTCATATGAGAACACATACTGGAGAGAAACCATTCAAATGTGAAACCTGTGGATCAGCTTTTGCTACATCTGGACAGTTGTTATTACATAATAGAGTAAAACACACTGGTGAACGGccttttaaatgtacatattgcGACAAAGCTTTCTATCAATCAGTTTCATTAAAAGGTCATGTTCGAACACATACAGGAGAAAAACCGTTCAAATGTGATTTATGTAATGTTTCTTTTAGTCAAAAATCTTCTTTAAAAACCCATTTGAAAAATCACGATAATCCAACTTTTAGTTGTGGTATTTGTGATAAAGTTCTTCGATCAGCTTTAGCTTTAAAGGCGCATAATCGTCGGCATAATGGTGAATCACCGTATAAATGCGAAATCTGCGGTCAAGCAGCTACTACTTCAAGTTCTTTGGTGGTTCATATGCGTGTTCATACAGGAGAAAAACCTTTTAAGTGTACAGATTGTCCAAACGTAGCTTATTCGACATCAAGTCAATTGAAGTTGCACAAACGTGTTAAGCATACAGGTGAAAGACCACACAAATGTTCTTACTGTTATAAAGCTTTCTTTCAGTCGACTTCTTTAAAAGCTCATGTACGAACGCATACTGGAGAAAAACCTTACAAATGTAAGAGTTGTGATGCATCTTTTGGTCATTCTAGCAGTTTAAAAACACACCAATTAAAGCATACGGGAGGTTCTCCTCATAAATGTGAAATATGCAGTCAATGTTTATCAACCCCAGCTGCTTTACAGACTCATATGCGCATTCATACTGGAGAAAAACCGTATAAATGTAAAGAATGTGAAATGTCGTTTACTACTTTAGCTCAATTATCTAGCCATAAAAGAACGAGACATATGGATATAAAACCATTGAAGTGTACTTTTTGTTCTTACATAACCAAGAATAGTAGCAGTTTGAAATCACATTTGTtgaaacatacatataaaaagccATACCGTTGTGACGAATGTGATGAACGTTTTTATACTTCTGCAAAACTAGTATTACATAAACGAGTAGAGCATACCGGTGAGAGGCCTTACAAATGCAGCTATTGTGACAAAGCATTTTTTATATCCACAGCACTAAAATCACATGAACGTTCTCATACTGGGGAAAAACCATATAAATGCGATCATTGCGAAATGTCATTTGCTCACTGGAGTAGTTGGAAATACCATTTAAAAAAGCATACTGcctag
Protein Sequence
MDENVFLNRHISQIQPLDMLWTSQSDMQDCSSSNSTQVIRPQTNQWQHSIQPSVNYEVSPRISKNIESTNSWSTSVQNYQLIRSTSRNEESSNEWTSRSATPQQYPMHPPPIPPPRTENRNTWTAEIAQEQFPPLPQITSSHHLQSNYLSSTPNTVAAPNSSNFHTAHPNIQTTQISTQSSNSPVFENSSLSSHLLPPFHLNKTTLMKSTNAMSSSEMLQQAKIAVSSNKNTVETTSTWIPPTIIREKKLNNFKDLTKEKVNYAFQVKLQKIQENTKKVCEQESSSNDLKIIEIDDKDDDVSIEGGDSICCTEIVSRESLYEKNVTELNKDLKNEVSLKNETFFDENITQVYNSENDITASNKNLINFEESVSKINENERKSQNQLENKSVVVPKPEEAHKVSYPHRGDDPKLRLKPLVKIEKMPRLVLEKYFPRFLLAKDFLQDLVRYKKGKKIKFRKQCKLCHRKFSTPTYLRIHLRQHTGEKPFGCNFCGKFFADKSALNTHTRSHTGEKPYKCEQCDLSFAHSGSLKWHAKKHDDPDAKFRTKCLSKSLTNEYFIVSDKPNAIDPTEMSEMLTTKTCNICNKSFSSSGYLKVHLRSHTGEKPFGCKTCGKFFISRSVLRMHLRSHTGEKPYQCETCDVSFSYSNSLKEHLKKHEDPNFKVEEFCQKECQYCQRIFTSSRYLRAHLRKHTGEKPHRCKLCGKHFMYAKNLQTHLKGHSGEKPHKCDKCGLGFLHLVSLKSHLKIHNGIGFRCNICGLQFPTLSKARIHMRGHSGIKPYRCKICGKGISTASSFSYHMRTHTGEKPFKCEECDVSYKSSGQLILHNRMKHTGERPYKCSYCEKTFFQSQSMKYHERVHTGEKPFKCEICGINTVTSSSLAVHMRSHTGEKPYKCNECDAAYTNSGQLLIHRRTKHTGEKPFKCTYCDKAFFHSAALKSHTRTHTGDKPFKCSKCDSRFSQSCSLRNHVKLHDGTAFKCEYCNKLFATESQVRTHLKSHTGERSHKCQICGQTSTTSSSLAIHMRTHTGEKPYQCKDCDDAFATSGQLVLHIRVKHTGERPFQCTYCEKAFFQSTALKIHIRTHTGEKPYKCDKCDMSFAYLTSLKSHLKIHDGIVYKCKYCQDTFPSLRYYRIHLKTHTGGKPFKCDVCGHRTSTSSNMVIHMRTHTGEKPFKCETCGSAFATSGQLLLHNRVKHTGERPFKCTYCDKAFYQSVSLKGHVRTHTGEKPFKCDLCNVSFSQKSSLKTHLKNHDNPTFSCGICDKVLRSALALKAHNRRHNGESPYKCEICGQAATTSSSLVVHMRVHTGEKPFKCTDCPNVAYSTSSQLKLHKRVKHTGERPHKCSYCYKAFFQSTSLKAHVRTHTGEKPYKCKSCDASFGHSSSLKTHQLKHTGGSPHKCEICSQCLSTPAALQTHMRIHTGEKPYKCKECEMSFTTLAQLSSHKRTRHMDIKPLKCTFCSYITKNSSSLKSHLLKHTYKKPYRCDECDERFYTSAKLVLHKRVEHTGERPYKCSYCDKAFFISTALKSHERSHTGEKPYKCDHCEMSFAHWSSWKYHLKKHTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-