Clon015590.1
Basic Information
- Insect
- Condylostylus longicornis
- Gene Symbol
- bab1
- Assembly
- GCA_029603195.2
- Location
- JAQSLO010000082.1:920847-923882[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4e-13 7.8e-10 39.0 0.0 3 45 529 571 527 571 0.92 2 2 0.43 8.4e+02 0.5 0.8 4 20 684 699 683 699 0.91
Sequence Information
- Coding Sequence
- ATGGGTAGCAGCGAAGGACAGACCTATTGTCTTCGATGGAACAACCATAAATCAAATTTGGTTGAAATCCTTGATGCTCTCATTAAAATGGAGTCATATGTTGATTGTACAATAGTTGTGGATGAACAAGTTCAATTTAAGGCACATCGTGTTGTATTAGCTGCTAATTCACCATATTTTCAATCTATATTACAAGATGTTCCAATGGATCACTGTAGTATATTATTTCCTGGTGTACAGGCATTTGAAATGCGTGCATTATTAGAGTATATGTATACTGGAGAGGTAAATGTTACACAAAGTCAAATACCACGTATTATGAAAATTGCTGAACAATTAGAAGTTAAAGGTTTATTTGATATGACtgacttaaaagaaaaatttacaaaatttgaagatAATGGCCCACCTAATCATACACCATATAATGTTCCTTTTACACCACCATTACCACCTCCACCACCATCATCATCTTCGCAATCTGTTGGTATTGGTGGAATATCCACAGCTGCCGCACATACACCACCTACATTTGGCGAAACTATAAAAGATACAAATAGAGATCTTAATGAAAGGGAAAGTCATCATCACTATTCTCAATCCCTTTCACACCATCgttcatcgtcatcatcattaaATTTAGAACGTAGTAGTAATGAAAGACGTCTTAGTAGCTCTGAAAGACGTTTAAGTGGTTATAGAGAAAGAGAATATAGAGATCGTAGTGGACATCGATCATCCTCTTCTGTAACAATGTCAGATCTCCATCATTCGCAACAACATCAACAATCATCGCCTGTTATTACAACATCATCAAATATTACACAACATCAGGCACAAAGTAGTAGTTCCCCACCGCcatcatatttatataagtcACCATATTCTAGTCTGTATACAAAAAGTCCAGGTCCATCTGAACACAGACGCAGCATTGACGATCGTAATGAACGTTACAATTCATCAAATGAAAGACATGAAACACAAGAGCGTGGTTTACATAATGAACGAAATACTGAAAGAGTTCTTGATAAAAGTCCACCATCGCAAACCCAACAGCGATCAATTACACCTCCACCATCTCAACCACCACCCTCATCTTCTCAACAACACACTCCATGGCCGATCTCATCAGTAATAGGACCCGGTTCCATCCCAACGTCAGCTGCAGCAGCCGCTATGTTAAGTTCTGTTTATGAAAGTGCGCCGGATATGAATCCactaaaacgtaaaaaactatCATCGATCTCAAGCATGTTGATGGCCAGTGACACACCTATATTAAGAAACGTCCTTGCCCAAAGCCATGCAGCTGATTCATCCCAACCTATGCCATTAATTAAACAAGAAAGGGAGAACGAGAAACAAGGACCATTGAACTGCTCAGGACCCTTAGATTACAATAATGAAAAgTACGCAAAATATGATGAACCACACTCTCCATTTATGGATAAATCTTGTGATGATGATCAAATGTTCATGAAAAATGATTGTTCACCAAATGAACGACTTGGAAATATGTCATATTCATCTAACAACAATTCACAAAAACCAGAATGGAAACGTTATAAGCAATATACAAGAAGTGATATCTTAGCTGCCATTGAATGCGTACGCAACGGGATGAGTGCTTTGCAAGCATCCAGAAAATTCGGTGTACCATCACGCACTCTTTACGACAAAGTAAAAAAACTGGGTATCACTACAGGCCGTCCTATGAATCGTACAATAAAACGAAGTCCAAGTACAGGAAGTAGTTCTGCTAGTTTTCCTTTTGGTTTAAGTGGAACTGCTCACCCTGCCTATAGCCAGGCTGAAGCAATGCTTTCCCAAATGCATGAATCTAATGAATTACATTCAAGCCATTTACGCGGTAATAACAATAGTAGTAATGGTAACGGTAATGGTGAAAAAGAACATCGTGAACATCATTTACCACCAAATCTACCGCACCCAGCCGCTGCTGCATTACTTGATCCAACATTCCTACAACAAGCATTTGAATCACGTGGCGGTGATATAGCTGGACGTGAAGCATTACACGCAATGGCATTAGCAGCAGCAGCACACGCTGCTGTCAATGGTATCTCAACAAGTCCCGGTACTAATGGTACAGCAAGATCACCCAGTCCTGGATTTgccttaaaatattcaagatcTCATCAAAATTCACCACCACCAACTTCTACtacaaatatgaatttgaatagatcatcttcatcatcaacATATTCCCGACATCAATTAAGAATACCACAAGATACTGAACATAATATGcataatgaaagaaatttaaaaagagaatgCATTATGAAATATGACCGTGAACTCgacaatgatgatgatgatgacgatgatgatgatgatggaaaTCATTCTAGATCATCACAACCGGATAGAACATATAAAGATGATCATTGTTTATCAGAACGTAGAGAATTGGAATTAATTGAACATGAGAATAGAAATAGACTTGGAAAAAAAcgtaatttaatagaaattgaaaatgaacaAGATCGTGTCGAAGATCTATCTGTTAATAGGAAATCAATAAcagtacaacaaaatttaaaatcaccaTCACCAACAAGACCAttatcaccatcatcatcatcacatcCACCACATTCTCCAACATTACAACCACCATTACCGCTACCATCAAGATCACCATCATCATTACATCAAACGAACAATGAAAGTAATCATCATTTACATCAATcacatcataataaaaatacatcatcatcatcatcatcaacatcatatAATACTGGTAATCAACAATCTACTGGTGTTATAATGCCACCAATTATATCAAAACTTTCTTCAAATACTATTAgtgaaacaacaacaacaacaacagattATCCAGTGAGTCATGAATCGACAGTAACATCAGCACCAACATTATCAATGAAAAGAGAACTGATAGCAGAAGATGAAACAAGAGACtag
- Protein Sequence
- MGSSEGQTYCLRWNNHKSNLVEILDALIKMESYVDCTIVVDEQVQFKAHRVVLAANSPYFQSILQDVPMDHCSILFPGVQAFEMRALLEYMYTGEVNVTQSQIPRIMKIAEQLEVKGLFDMTDLKEKFTKFEDNGPPNHTPYNVPFTPPLPPPPPSSSSQSVGIGGISTAAAHTPPTFGETIKDTNRDLNERESHHHYSQSLSHHRSSSSSLNLERSSNERRLSSSERRLSGYREREYRDRSGHRSSSSVTMSDLHHSQQHQQSSPVITTSSNITQHQAQSSSSPPPSYLYKSPYSSLYTKSPGPSEHRRSIDDRNERYNSSNERHETQERGLHNERNTERVLDKSPPSQTQQRSITPPPSQPPPSSSQQHTPWPISSVIGPGSIPTSAAAAAMLSSVYESAPDMNPLKRKKLSSISSMLMASDTPILRNVLAQSHAADSSQPMPLIKQERENEKQGPLNCSGPLDYNNEKYAKYDEPHSPFMDKSCDDDQMFMKNDCSPNERLGNMSYSSNNNSQKPEWKRYKQYTRSDILAAIECVRNGMSALQASRKFGVPSRTLYDKVKKLGITTGRPMNRTIKRSPSTGSSSASFPFGLSGTAHPAYSQAEAMLSQMHESNELHSSHLRGNNNSSNGNGNGEKEHREHHLPPNLPHPAAAALLDPTFLQQAFESRGGDIAGREALHAMALAAAAHAAVNGISTSPGTNGTARSPSPGFALKYSRSHQNSPPPTSTTNMNLNRSSSSSTYSRHQLRIPQDTEHNMHNERNLKRECIMKYDRELDNDDDDDDDDDDGNHSRSSQPDRTYKDDHCLSERRELELIEHENRNRLGKKRNLIEIENEQDRVEDLSVNRKSITVQQNLKSPSPTRPLSPSSSSHPPHSPTLQPPLPLPSRSPSSLHQTNNESNHHLHQSHHNKNTSSSSSSTSYNTGNQQSTGVIMPPIISKLSSNTISETTTTTTDYPVSHESTVTSAPTLSMKRELIAEDETRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00363367;
- 90% Identity
- iTF_00363367;
- 80% Identity
- iTF_00363367;