Clon003837.1
Basic Information
- Insect
- Condylostylus longicornis
- Gene Symbol
- ttk
- Assembly
- GCA_029603195.2
- Location
- JAQSLO010000013.1:736204-738432[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6 5.2e+03 -2.0 0.2 10 20 351 360 350 360 0.83 2 2 8.7e-18 1.7e-14 53.9 0.0 2 41 586 626 585 630 0.94
Sequence Information
- Coding Sequence
- atgtcggTTCAGCAATTTTGTTTGCGATGGAATAATCACCAACCGAATTTTATATCTGTTTGTTCGTCTCTACTACATAATGGAACATTAGTAGATGTTACATTAGCTGCCGAAGGAAAGCAGTTACAAGCTCATAAAATTGTTCTTTCAGCTTGCAGCTCGTATTTTCAAACATTGTTCACTACAAATCCGTGTAAGCATccaatagtaatattaaaagatGTTCAGTATAACGATCTAAAAACAATGGTTGATTTTATGTACTATGGTGAAGTAAATGTTTCACAAGAACAACTTCCGCATATATTAAAAACAgcagaaatgttaaaaataaaaggtttaGCTGAAATGCCTGCAGATGCTGCAACACTAACAAAATCCGATAATAAAGTTGATCACACAGATCAGTTGCAGGGAGGTGGAGGTTTAGGTACTGATTCGTTATGGGGTAACGCTGAATCACAAtttcaacaacagcaacagcagcagcagcagcaacaacagcagcaacagcagcaacaacaacagcaacaacaacagtcACAACATCATTTGCATGGGAATCCACAACAAGGCAATCAAACCCAAAGTCTTCATCAATTAAGAAGAACTCCTTCACCAGGCTCTATATCTTCGCCAGTATCCCGTAAAAAACGTGCAAGGAAAACTTCAAATAATGGGCAGACAGTcgacataaataataaaaattgtaatatcgATCAGTcaactaatataaatttaaatcagatAAATCAAATACCGTTTAGTAATAATACGAATGTAACCCAAACTTTACATACAAAGATTGTGAAAGAAATATCTACATCCGATCAACAACAAGAAGCTTCATTAGAAGATATTGATTCTCACCAACACCATATTAAACCAGAAAATGATATAGGAGTACAGCAAACGATGCAGCAAGATATTTCTGGTGCAACGTCACCATCAGATTATGGTACAACAAGGGTTAGCTCTCAGCCGCAATCGGCTCATTCTGGAGTGCAATGGACAGTTGTTGATTCTAGCTATAACCCTAGATTTTCCTTATCGTCATGCCAATCTGGGATGTCATTATCAGGTAATGGAGCTGGAAATGATAATCAAGATAGTGGAAATAATTCAAACAATGATGGAAATGAAAATCATGCTAATGATTCTACAAATCCACAAAAGCCAACGGCAAATAATTCTGTAACAAATAATCAGCAGCAACAAGGCCACATTCAAATTCCCTATCAAGATTCACAATATTCATCTCAAATTATTTCTGTTAACAATTTAGTGGGTGGATATTCTCAACAtcagcaacaacagcagcagcaaaCACAACAGCAACAGAATATATCCACTCCAACGTCACCAAATGAATCAACTATGGTACAATCGGTTTATAGCCAAGGGCCGACGCCCACACCGTCTCCAGTATCCCATCAAATTTCTCAATCCAGCTCATCTACTCGAAATGCTACTTCAACAGTGGCTGTTGTTGCGGCCTCAATAGCATCCACCCCCACTGCTAATAATACTTCATTAAACAGTTCAATACAAAATTcgtcaaattcaaataatttttcaggaAGTAATGCATCAGGTAATAGCTCTACAGGTGGTAATAATGTATCGATGATAATAGGGACATCAGGAACAAGCGGAGcacagcaacaacagcagcaacaacagcagcaacagcagcagcagcaagGTACATCATCCTCGGTTGTTAAAAGAAAACGTTCAGTAAATCCACAAGcggatgaaaattttattaaagctttGGAAGCAGTACGCACCGGTGGTATTGGATTTTGTAAAGCAGCTCGAATATATGGTGTTAACAATCGTACGTTATGGttagaatataagaaaagaGGTTATTTAATTAGTCGACCAAGTATAAAAAATCGTATTAAATTAGAGCCAAATATGTCACCGCAGCCACCATCAACACCAACAAATGAAGAAACtagtattgaaaattatgaacatCTAAATCAGTCAGCTTTAAACATACAAGTACCGCCACCATCTGAAACACCAACGCCCATAATGTGTACGCCTCATACACATATGGGGGTTATGAGTTTTTTGGATACGCGACATATTTCTGAATTTCAAACCACTACAGGAATTCATTCAATGTCAAGGCAACGGTACACGGACACTGGTTCAGTAAATGTTAATTCTGGAGCAATGAACTTACaaggattaaattttaactcaatGTAG
- Protein Sequence
- MSVQQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGKQLQAHKIVLSACSSYFQTLFTTNPCKHPIVILKDVQYNDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPADAATLTKSDNKVDHTDQLQGGGGLGTDSLWGNAESQFQQQQQQQQQQQQQQQQQQQQQQQQSQHHLHGNPQQGNQTQSLHQLRRTPSPGSISSPVSRKKRARKTSNNGQTVDINNKNCNIDQSTNINLNQINQIPFSNNTNVTQTLHTKIVKEISTSDQQQEASLEDIDSHQHHIKPENDIGVQQTMQQDISGATSPSDYGTTRVSSQPQSAHSGVQWTVVDSSYNPRFSLSSCQSGMSLSGNGAGNDNQDSGNNSNNDGNENHANDSTNPQKPTANNSVTNNQQQQGHIQIPYQDSQYSSQIISVNNLVGGYSQHQQQQQQQTQQQQNISTPTSPNESTMVQSVYSQGPTPTPSPVSHQISQSSSSTRNATSTVAVVAASIASTPTANNTSLNSSIQNSSNSNNFSGSNASGNSSTGGNNVSMIIGTSGTSGAQQQQQQQQQQQQQQQGTSSSVVKRKRSVNPQADENFIKALEAVRTGGIGFCKAARIYGVNNRTLWLEYKKRGYLISRPSIKNRIKLEPNMSPQPPSTPTNEETSIENYEHLNQSALNIQVPPPSETPTPIMCTPHTHMGVMSFLDTRHISEFQTTTGIHSMSRQRYTDTGSVNVNSGAMNLQGLNFNSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00363353;
- 90% Identity
- iTF_00160826;
- 80% Identity
- iTF_00363353;