Clon007220.1
Basic Information
- Insect
- Condylostylus longicornis
- Gene Symbol
- -
- Assembly
- GCA_029603195.2
- Location
- JAQSLO010000027.1:4379870-4381180[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.4e-07 0.00027 21.3 0.0 6 39 240 273 239 278 0.82 2 3 0.36 7.1e+02 0.7 0.1 28 39 316 327 315 332 0.83 3 3 3.2e-10 6.2e-07 29.7 0.0 4 38 354 387 351 391 0.91
Sequence Information
- Coding Sequence
- atggtaTTCTACCGGCATAACAACATTTTAAAGGATATCTTTGAGCAGCACGTATTTCCAGATATTAAGTTTTGCTTTAGCGATGGTGATTTTCTTTTTGCACATCAAGCAATTTTAGCTATGAAtaatataagtaaaaatattatgcaaaagaTATTGCATTATTTGTATACAGGCGAAGTTCAATTAAATCTTGAAGAAATTGCaagttttattgaaacaaaaatattttttggcatAAACGATGAGATCTCTCACAAGTGTATTATTGGAGATGAAAAGCATAATGAAACTTCAATTTTTGAACCATCAGATTTACATAAAGATTTACACAAGGACATTCATGACAAAAAaccgattaaaaaaaaatacctaaagGAGAATTATAGAAAACGAAAAGTAGAATACAAAGATGCGTGTCAAATTCAACCAACGGAAAATCTCTTTCCGCGTGATAGCCAAATCATGAACTACaaactttGTGAAGTTCAAAGTGAAAACTCTAGAAATTCATCAGTTTATAATTTGGAATGTGAttctttagaagaaaataatcataatgacTCTGTTGATTGTTAtgattatactttaaaaaatccaaaatgttTTTCGGTAGATGAAATCGAAATAGATGAAATTACGAGAAATTCTGAACAAACCTGTAATTTTGAAGGAAATGAAGAAAACAACATAATGGAACAAcgtaaaattttagttgaagaAGCTGTAAAACAAATTCTTGAAAATGGTGTAAGCATAACAAGcgcctcaaaaaattttaatataccaaaAACACTTTTGTGgcgaaaagtaaaaaatgatccggaatataaaataaaaagtgaaaaattatttggtaaaagaaacacaaaagaaatattGTCTGAATTATGTGATCGTTTAAAAAACGGTGAAAAGCTTATAAACATCAGTAAAATTTTGAGGGTGCCATTATCAACATTGCATTGGTATAAAAAACGTTTATTAACAGCAGGTTTACTTCCGGAAAATTTCATGTCAACACGACAAACTTTAAGAAATGAtagtagaaaaaagaaaagtctAGAAAAAGCAATTGAAGCTTGTAAAAGAGGTATGGTACAAAATAAAGCTGCTATAAGATTTAATGTCTCTAAAGCAACTCTTTCTCGACGAATGAAGAATTTAatgcaaaatgaataa
- Protein Sequence
- MVFYRHNNILKDIFEQHVFPDIKFCFSDGDFLFAHQAILAMNNISKNIMQKILHYLYTGEVQLNLEEIASFIETKIFFGINDEISHKCIIGDEKHNETSIFEPSDLHKDLHKDIHDKKPIKKKYLKENYRKRKVEYKDACQIQPTENLFPRDSQIMNYKLCEVQSENSRNSSVYNLECDSLEENNHNDSVDCYDYTLKNPKCFSVDEIEIDEITRNSEQTCNFEGNEENNIMEQRKILVEEAVKQILENGVSITSASKNFNIPKTLLWRKVKNDPEYKIKSEKLFGKRNTKEILSELCDRLKNGEKLINISKILRVPLSTLHWYKKRLLTAGLLPENFMSTRQTLRNDSRKKKSLEKAIEACKRGMVQNKAAIRFNVSKATLSRRMKNLMQNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00363401;
- 90% Identity
- iTF_00363401;
- 80% Identity
- iTF_00363401;