Clon007219.1
Basic Information
- Insect
- Condylostylus longicornis
- Gene Symbol
- -
- Assembly
- GCA_029603195.2
- Location
- JAQSLO010000027.1:4377037-4378682[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.3e-13 2.6e-10 40.5 0.0 4 44 321 361 318 362 0.92 2 3 0.081 1.6e+02 2.8 0.0 28 37 391 400 390 405 0.89 3 3 2.5e-16 4.9e-13 49.2 0.0 5 43 431 468 430 470 0.93
Sequence Information
- Coding Sequence
- atggaaaataatttaaaatggatGGGGCATACTGCAACAATATTTGAGATGCAAAGAAAGATCTTAAAAGAAGGAGCATATTATGATGTCAAACTCGTTTTTCATAATGGCGAATACTTATTTGCTCACAAAGTTATTTTATCTTCTTATAGTGATTTCTTTAAggaatgtttgaaaaatataccTGAAACACTAGATCAGGAGACCGTTATTATTATACCGGATATTAAAAGATccattatgcaaaaaattttagattttgtttatattggcGAAGTTACGCTAAATTCATCTgatttaacagaatttttagaAAGTAATACGTTCTTgggtattaaaaattctataagttTTGAATGTGCTTTCCAAAACAATCCTACTACGCATGCAAGTGAAACTCGTATTGAAGAAGTAATAGAAATTTCCCAgtcaattgaaaatcaaaatatggaAACCGAACAAATAAACAGTGAATCGGAAGAGCAACAAAAAGAACACCAAAATAGCTCAAAAGAAATGCACgaacaatgtaaaaataattcatcaGTACATATGAAAGTTAACATTGAAAGTGAAATTGATCCCAGCCCCCAAAATCAGTTTTCGACGATTGAAGAATTTGAACAAGTTGCTGAAAGTACTGAAGCCGAAGGCGAATATATAATATCCGataatgttgaaaattacaCTAAATCGTATACTTTGAAAGAGGAAAAATTGTCTTCTGGCcttataaaaattgaagtgTCATCAATTCCAGTTGTTACGGCAGTCAACGAAAATCCTTCTGATGaaacaacaatttataaaataacagaaGATGAGAATGTTGAAGCTGAAGGAACCTCTTCTGTTTCTCAAGCTGAATATaagatatataatattgaaacagAAACTAATAGTCCAAACACATCTAAAACACAATACATTGGGCACAAAGTTTATACAGAACGCGAACATAATATTACCATGGCAATTAAAGATGTATTAGAAGAAAGTTTAAGCTTATCAAAGGCAGccagtaaatataatatttcaaaaacggTATTGTGGCgaagaattaaaaatgatcCCATGTACAAGCATAGCCGACATAACCCAATGTTATCACTGGCGCGCGAAAGATTGGAAAAGGGGGAAACTTTGAAAAGTATTAGTCAATCGTTGAAAATACCAATGTCAACCTTACATAGACATAAGGTACGTTTGTTAGAACAAGGATTTTTGCCAGATACCGTAACTCAAGTTAAAAGACGATTAGaagaagataaaataaatttaaagtacaaattAGAGCAAGCAATAAAAGCATGCCAAATGGGAATGTCACAAAATAAGGCTGCACAAGATTTTGGAATATCTAAATCAACTTTGTGGAGACATTTTAAACGTATAGAAGCATCACAATTATTAAGTGATCAACCTAATGATATAAAAAAGTATGATGCATTAGAATATAGTACAATTGAATATACAATAACAGATCAAGACGTTGACCAAGAAATTGTTGAAGAAGAGCAAGAATATTCCATATCAGAATTTGAAGATgacgaaaataaatttcgatCAATAATGTcgtaa
- Protein Sequence
- MENNLKWMGHTATIFEMQRKILKEGAYYDVKLVFHNGEYLFAHKVILSSYSDFFKECLKNIPETLDQETVIIIPDIKRSIMQKILDFVYIGEVTLNSSDLTEFLESNTFLGIKNSISFECAFQNNPTTHASETRIEEVIEISQSIENQNMETEQINSESEEQQKEHQNSSKEMHEQCKNNSSVHMKVNIESEIDPSPQNQFSTIEEFEQVAESTEAEGEYIISDNVENYTKSYTLKEEKLSSGLIKIEVSSIPVVTAVNENPSDETTIYKITEDENVEAEGTSSVSQAEYKIYNIETETNSPNTSKTQYIGHKVYTEREHNITMAIKDVLEESLSLSKAASKYNISKTVLWRRIKNDPMYKHSRHNPMLSLARERLEKGETLKSISQSLKIPMSTLHRHKVRLLEQGFLPDTVTQVKRRLEEDKINLKYKLEQAIKACQMGMSQNKAAQDFGISKSTLWRHFKRIEASQLLSDQPNDIKKYDALEYSTIEYTITDQDVDQEIVEEEQEYSISEFEDDENKFRSIMS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00363381;
- 90% Identity
- iTF_00363381;
- 80% Identity
- iTF_00363381;