Ccol005503.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- stc
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000005.1:17454792-17464640[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2 1.6e+04 -4.1 1.6 15 19 321 325 320 325 0.81 2 12 1.6 1.4e+04 -3.8 5.3 4 10 354 360 350 364 0.91 3 12 4.5e-06 0.038 13.9 14.6 4 19 370 385 368 385 0.94 4 12 0.049 4.1e+02 1.0 13.0 3 19 423 439 411 439 0.86 5 12 0.00014 1.2 9.2 14.2 1 18 479 496 469 497 0.91 6 12 8.3e-07 0.007 16.3 10.1 4 19 548 563 545 563 0.96 7 12 0.0002 1.7 8.7 11.5 1 13 603 615 603 625 0.87 8 12 1.4e-08 0.00012 21.9 15.2 1 18 630 647 630 648 0.97 9 12 1.9 1.6e+04 -4.0 1.4 6 10 677 681 676 682 0.53 10 12 2 1.7e+04 -6.5 11.9 9 19 694 705 684 705 0.76 11 12 2.4e-06 0.02 14.8 10.3 1 16 741 756 741 767 0.81 12 12 4.5e-06 0.038 13.9 13.3 1 19 773 793 773 793 0.95
Sequence Information
- Coding Sequence
- ATGGAAGAGAATTTGGATAGGTTGCAGTCCTTAGTAGCAAAGTCTAATCTTGTGGCTACAGCAGGAGAGTTTGTTCCTAAAACGAATGTAGGATTGCAACAACAAAGATGTAAGAAATTTGATAATGTTTACAGTACATCACATTACTGTTCTGATCACACCAACTCATGTAATGAAAGTGGAAATAGCAATTTAAGTAAGCCAAATGTGGCTTTAGCAGGAAGCAGCAGAGATGTCAGTTGTTGTTTAAATTTGCCAAATTCATCTGGCATTGAAGTTGAAAATGCATCGAGCAGCTTTACAAATGAGAGAAGTGATGTATTTCTTTCAGGCAATAAAGAACATAGACATTCCAGACCTAACTCAGGGAGATATAATAAGTGGAAAAAAGCAGAAGTTGGTGATGGTAAAAAAAAGAGTGATGGAGAGCACAGTAACATAGATTTTCAAAAAGATTCATCAAGCAAGGACTCAAACAAAGCTAAGGCAGGACATAAAAACCATGGAAGTAGGTTTTTATGTAGTGTTAAATCTTATGAAAAAGGTCGATGTCAAACATACCTTCCCAAAGTTAAAAATTATGGGGATACTGGGAGAGGCAATATTTCATTTGCTAATCATTTTATGACTAGAAATAGAAGTGAACTTTATAAAAATGATGGCAGATATAAATTTAAACAGTATTATTGTGACAAAAATGGAAGCAAGGAGGGTGTTAATGAGAAAATTGATGTGTGTAAAAGTAAAGGTTACAACAAAAATAGTGAGGGTTTTGAAAAAACCAATCAAAGAGAACTTTTGATTGATTTGCTTACTTGTGGAGTTTTAGAATGTTTGGTTTGCTGTGAACAAATACTTCAGAATAGTTCTGTGTGGAGTTGTAGTAACTGTTATCATGTGCTTCACTTAAAGTGTACAATAAAGTGGGCAAAATCTTCAAAAAGTGATTTTGGATGGAGGTGTCCTGCTTGCCAAAATGTTACATCCACAGTTCCATATGAGTATTATTGCTATTGTGGAAAAACTAAAGATCCAGAATGGAATCATCATGACTGCCCTCATTCTTGTGGTGAGGTTTGTGGAAAAACTCATAGAAAATCCTGCCCCCACAAGTGTATGTTGCTGTGCCATCCTGGCCCTTGTCCTCAATGCTCAGCTACTGTTACCAAGGCCTGTGGGTGCCAAAGAACAACCAAAACCATTCAGTGCTGCAGTGATGATGTAGTTGTTTGCAGTAATGTGTGTGGAAAAGAACTTAATTGTTTAATTCATCTATGTCCTAGAAAATGTCATGTGGATTCCTGTGAGGAATGTCAACAATTGGTTGGTCAAGATTGTTTTTGTGGAAAGGAGCACCGGAATGTAAAATGCACGATTGAAGCTATTGGTGTTCAAAACTTTGTTTGTGGTGGTATTTGTAAAAAGAAGTTGAGCTGTGAAAATCATTTTTGCGACTTGATTTGTCATAAAGGAGAATGTCCGAGGTGCGAATTAACTCCTGACCTCGTCAAGTTTTGTCCTTGCGGGAAAACTGAACTTATTTCTTTAAAAACGGAAGAAAGAAGATCGTGTACTGATCCAGTACCTACTTGTAATTTGATATGCGGCAAAACTCTTAGGTGTAGTCAGCCTGGAAATCCTCATATTTGTCAGAGCAAATGCCACGAGGGATCTTGTCCTGTTTGCCCGCTAGAAGTGATGGTCAAATGCCGATGCGGTCACATGAATAAAATGGTATCGTGTTCGGAACTTGATGCTGGAGCGAACAATATTCGATGTGACAAACGTTGCTCAAAGAAGAGAAGTTGCGGAAAACATAAATGCAATCAACTGTGTTGTACTGGCGTCGATCACGAATGCCTACTTCCTTGCAATCGCCTTCTTCAATGCGGCTTGCATCGCTGCGAAGAAACTTGTCATAGAGGCCACTGCAAACCGTGTTTGCGTGCTAGTTTTGAGGAACTTTCCTGTGAGTGTGGAGCCCAAGTTATTTTTCCTCCTGTACCTTGTGGTACGCGTCGTCCTCCTTGCGATCGTCCATGTACCAGGACCCATAACTGTGATCATCCACCTACTCACAGCTGCCACAGTGAAAATCAGTGCCCCCCTTGTACAGTTCTCACTAAAAAATACTGCCACGGTCGACACGAGTTGAGAAAGGCTGTACCGTGTTATCAAGAGTCTTTTTCTTGTGGTTTGCCTTGCGGTAAGGAAATAGAATGTGGAAGGCATAAATGCATTTTGTCCTGTCATTCCGGAACCTGCTTAAAAGATGGTCAGTCTTGTCTTCAACCCTGTCCAGTTCTGAGACCGGTTTGTGGGCATATTTGTGGAGCACCTTGTCATGATGGACCCTGTCCTGTTGACATACCTTGCAAGGAAATGGTTAGGGTCACTTGCGATTGCGGTCATAGATATACAACGAGAGCATGCCACGATAATGCCAGTGAATATCAGCGCATTGCAACTGCTAAACTAGCATCGAAAATGGCTGATTTACGAGCTGGTCAAAGTATAGAATTAAACGATGTTGTTAGAGCTAGTAAAAAATTGTCTTATAAAACGTTGGAATGTAATGACGAATGCAAATTAATCGAGAGAAATCGACGGTTAGCCATCGCCCTTCAAATTAGAAATCCCGATTTAAGTGCCAAGTTAACGCCGCGATATTCGGAATATTTAAAAAATTGGGCTAAAAAGGATCCTAGATTTTGTCAAATGATTCATGATAAACTCACGAATTTAGTGCAATTAGCGAAACAGTCGAAACAAAAATCTCGAAGTTTTTCTTTTGATCCAATGAATCGAGAGAAAAGGCATTTCATTCATGAATATTGCGAGCACTTTGGTTGCGAATCCGTAGCCTATGACCAAGAACCAAAGAGAAACGTCGTCGCCACAGCTCTGAAAGATAAGTCTTGGCTTCCCAGTATGTCAATAATTGAATTCCTTCAAAAAGAAAACAGTCCGAGAAAAGTTCCCGCTCCTGTTATTGTGAAGACCATGACTCCGATTTCGCAAAGGACCATGGAAATCTTACCGAGCAAAATTTTATCGAACCATCAGGCTGATCAAGGACTTCAAGAGGGGAGTTCAGGCACTAACAACGAGTCACAAATTGACTACTTTGATTGGACATCTCAGAACTCCTGA
- Protein Sequence
- MEENLDRLQSLVAKSNLVATAGEFVPKTNVGLQQQRCKKFDNVYSTSHYCSDHTNSCNESGNSNLSKPNVALAGSSRDVSCCLNLPNSSGIEVENASSSFTNERSDVFLSGNKEHRHSRPNSGRYNKWKKAEVGDGKKKSDGEHSNIDFQKDSSSKDSNKAKAGHKNHGSRFLCSVKSYEKGRCQTYLPKVKNYGDTGRGNISFANHFMTRNRSELYKNDGRYKFKQYYCDKNGSKEGVNEKIDVCKSKGYNKNSEGFEKTNQRELLIDLLTCGVLECLVCCEQILQNSSVWSCSNCYHVLHLKCTIKWAKSSKSDFGWRCPACQNVTSTVPYEYYCYCGKTKDPEWNHHDCPHSCGEVCGKTHRKSCPHKCMLLCHPGPCPQCSATVTKACGCQRTTKTIQCCSDDVVVCSNVCGKELNCLIHLCPRKCHVDSCEECQQLVGQDCFCGKEHRNVKCTIEAIGVQNFVCGGICKKKLSCENHFCDLICHKGECPRCELTPDLVKFCPCGKTELISLKTEERRSCTDPVPTCNLICGKTLRCSQPGNPHICQSKCHEGSCPVCPLEVMVKCRCGHMNKMVSCSELDAGANNIRCDKRCSKKRSCGKHKCNQLCCTGVDHECLLPCNRLLQCGLHRCEETCHRGHCKPCLRASFEELSCECGAQVIFPPVPCGTRRPPCDRPCTRTHNCDHPPTHSCHSENQCPPCTVLTKKYCHGRHELRKAVPCYQESFSCGLPCGKEIECGRHKCILSCHSGTCLKDGQSCLQPCPVLRPVCGHICGAPCHDGPCPVDIPCKEMVRVTCDCGHRYTTRACHDNASEYQRIATAKLASKMADLRAGQSIELNDVVRASKKLSYKTLECNDECKLIERNRRLAIALQIRNPDLSAKLTPRYSEYLKNWAKKDPRFCQMIHDKLTNLVQLAKQSKQKSRSFSFDPMNREKRHFIHEYCEHFGCESVAYDQEPKRNVVATALKDKSWLPSMSIIEFLQKENSPRKVPAPVIVKTMTPISQRTMEILPSKILSNHQADQGLQEGSSGTNNESQIDYFDWTSQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -