Ccol008829.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- nfxl1
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000012.1:2361531-2365888[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.6 1.3e+04 -3.8 3.2 14 19 164 169 164 169 0.87 2 19 0.28 2.4e+03 -1.4 0.4 4 10 200 206 199 206 0.92 3 19 4.5e-08 0.00037 20.3 16.4 1 19 214 231 214 231 0.99 4 19 8.9e-07 0.0075 16.2 13.8 3 18 269 284 267 285 0.91 5 19 1.3 1.1e+04 -3.5 1.0 6 10 310 314 309 314 0.88 6 19 5.3e-07 0.0044 16.9 11.5 1 19 320 338 320 338 0.98 7 19 0.085 7.2e+02 0.3 0.5 1 5 370 374 370 380 0.85 8 19 0.0011 9.4 6.3 15.3 1 18 395 412 395 413 0.97 9 19 1.3e-09 1.1e-05 25.2 13.2 1 19 422 440 422 440 0.99 10 19 0.1 8.4e+02 0.0 5.7 10 19 472 481 470 481 0.91 11 19 0.0036 30 4.7 7.2 1 12 491 501 484 501 0.86 12 19 0.24 2e+03 -1.2 1.4 14 19 529 534 527 534 0.91 13 19 0.16 1.3e+03 -0.6 0.2 7 12 549 554 549 556 0.86 14 19 1.4 1.1e+04 -3.6 0.5 6 10 560 564 559 564 0.84 15 19 0.00028 2.4 8.2 5.4 1 11 570 580 570 581 0.96 16 19 2 1.7e+04 -5.5 2.7 15 18 595 598 594 602 0.55 17 19 0.0076 64 3.6 17.9 3 18 611 626 610 627 0.91 18 19 2 1.7e+04 -6.7 3.1 10 13 634 637 633 637 0.68 19 19 1.3e-06 0.011 15.7 13.0 1 18 672 691 672 692 0.90
Sequence Information
- Coding Sequence
- ATGAGTTCTCCCAATGTTGGACGTGGAAGAGGAGGAAATCCTTGGAATAGGGGAGGAGGTCATGGTAACATTCCGAACGGAAGTCAGAAATCGGCTGAAGACAAATTTCGCGAGGCTCAAGAGAAATTACAAGCATCTGTGCAGAAACATTTAGAGGATCAAGAGTATGACTCTTCTTCGGATGAAGGAGATTTGGAGTCTGAATCGATTTTGAAGTCAGTTTTTGAAAATTACACCCGATTCAATGAAAAACGTGAGGGAATTGAGAGGACGCAACAGTTTTTGGAAAACTCATTTCAGTCAGGAGCTGGCATATGTTTGATTTGTATTGCAAGCATTAAACGAGCTGATGCTATATGGAACTGTCTAGAATGTTATGGATTTTTTCATTTGATCTGTATCCAAAAATGGTCCAGAGACAGCATCTATCAACAGAAGTCAACACAAGAAGAGATGTATGCGATTCAATCTATCGATAAAATTCTCTGGCCTTGTCCAAAATGCCGTCATGAGTATGAAGAGGTTGATGTGCCACAAAAATATTTATGTTTTTGTGGGAAAGTTGAAGATCCTCAACATCATCCCTGGCTTGTACCTCACTCATGTGGTGACACATGTAACAAAGCATTAAAACCGGAGTGTGGTCATAACTGCTTGCTCCTCTGCCATCCAGGTCCATGTCCACCGTGTCCAAAGACTGTCGAGTCATATTGTTACTGTAAGAAACAAGGTCCTAAGCATCAGCGCTGCAGCAACAAACTCTGGTCTTGCAATTCGATATGTGAGAAACCTCTCGCGTGTAAGAAACACCTGTGCGAAGAATCCTGTCATTCCGGAGAGTGTCCACCTTGCAACAAAGAAAGCATTCAGAAATGCAAGTGTGGCCAACAGGAGAGGAAGCAACCTTGCTTCGAACCAATATGGCAGTGCGATAAGGTTTGTGAGAAACCATTTTCCTGCGGGTTTCACAAATGCTCTCTCATCTGTCACGAAGGCGGGTGTGGAGATTGTCCACTGTCCTTAGAAAGGACGTGTCCCTGTGGGAAAACTTCCTTCGTTCTGCCCTGTACGGAGGACTGCTTGGAGATAGTCACTAAAGTCTGTAGGTGTGGCCAGCACAAGAAGGATCTTCCGTGTCAGAAAGACTTTTTATGCGAAACCAAATGCAAACGGATAAAAAATTGTTCACGTCATCCGTGTAACAGAAAGTGTTGTGATTCAAGGTGTCCTCCATGCGAGAAACCCTGCGGTCGGACACTTAAATGCGGATATCACAAATGCCCTTCCGTGTGTCACAGGGGTCAGTGTTATCCGTGCCCTCAGGTCGCTCAGAAGAAAACTTCACCTCCCAAGTGTAACAAACGTTGCATGATTCCTCCAGATTGTCATCATTCCATGAGAGAACCGCATAACTGTCATTATAGGGAGTGTCCGCCCTGTCGTCAGATGTGCGGGAAATCTAGAGAAACTTGTTCTCACAGATGTACAGCTCCTTGTCACAGTTCAGTCGTGACAAAGGTTCAGGGAGATCATCCTCCTGCAGGTCCCTGGGAAGTAGAGTCTAAGACTGTACGTTGCAGCTTCCCATGTCCCGAATGCAAAGTTCCTGTTCCTGTGACCTGTTTCGGAGGTCACGAAACCGTTGAACGGCCGTGTCATTCGTCCGAACCCTCATCTTGTCAGCGTTTCTGCGGTCGTCTTCTCAAATGCGGGAATCACTTGTGTGACAAAGAATGTCACGTGGTCACAGGTGCCCATAACTATTCAGAGGCGGGCGAGAACTGCAAGGAATGCGAGTCGGAGTGCTTGAAAGAAAGACTGCCAGGATGCACTCACCCTTGTCCGTATCCCTGTCACCCAGACCCATGTCCTCCTTGTAACCTAAACGTCAAACTCAAGTGTCACTGCGGCATTTCTGTGTTGTATATCCACTGCGGTGAACTAAACTCACAAAACGACGAGGACAAAGTGAAGTTGTTGAGCTGCGGGAACCAGTGTCCTAAAAACTACCCTTGCGGACACAAGTGCAAAGCGAACTGTCACCCAGGTGACTGCCCCGATCCGGATTCCTGTCGGAAAAAGGTCAAACTACAGTGCAAGTGTGGAAGATTCAAGAGGGAATTCACATGTGACTTCGTCAGAAAGTCAAACATGACAGCCGTCGAGTGCGACGATGTCTGCGCCCGCAAGAAGGAGGAAGCGATAAAGGCCAAAGAACGTGAGCTAGAAAAGAAGAGAGAAGAGGAGGAGAGGAAAAACCGCGAAGAGCTCGAAAGATTCGAAAAGAAATTCCACGCGAGGAGAAAGCAAAAGGAAACGAAAGTCGAACCTAAGCAGGAAACGTCTTTCTTCTTCCGTTATTACCTCGTCATTTTTGGCGCGCTTTTCGGAATCACAGCAGCCATTATCTACTTCCTGATATAA
- Protein Sequence
- MSSPNVGRGRGGNPWNRGGGHGNIPNGSQKSAEDKFREAQEKLQASVQKHLEDQEYDSSSDEGDLESESILKSVFENYTRFNEKREGIERTQQFLENSFQSGAGICLICIASIKRADAIWNCLECYGFFHLICIQKWSRDSIYQQKSTQEEMYAIQSIDKILWPCPKCRHEYEEVDVPQKYLCFCGKVEDPQHHPWLVPHSCGDTCNKALKPECGHNCLLLCHPGPCPPCPKTVESYCYCKKQGPKHQRCSNKLWSCNSICEKPLACKKHLCEESCHSGECPPCNKESIQKCKCGQQERKQPCFEPIWQCDKVCEKPFSCGFHKCSLICHEGGCGDCPLSLERTCPCGKTSFVLPCTEDCLEIVTKVCRCGQHKKDLPCQKDFLCETKCKRIKNCSRHPCNRKCCDSRCPPCEKPCGRTLKCGYHKCPSVCHRGQCYPCPQVAQKKTSPPKCNKRCMIPPDCHHSMREPHNCHYRECPPCRQMCGKSRETCSHRCTAPCHSSVVTKVQGDHPPAGPWEVESKTVRCSFPCPECKVPVPVTCFGGHETVERPCHSSEPSSCQRFCGRLLKCGNHLCDKECHVVTGAHNYSEAGENCKECESECLKERLPGCTHPCPYPCHPDPCPPCNLNVKLKCHCGISVLYIHCGELNSQNDEDKVKLLSCGNQCPKNYPCGHKCKANCHPGDCPDPDSCRKKVKLQCKCGRFKREFTCDFVRKSNMTAVECDDVCARKKEEAIKAKERELEKKREEEERKNREELERFEKKFHARRKQKETKVEPKQETSFFFRYYLVIFGALFGITAAIIYFLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -