Ccol004866.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- pnr
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000011.1:12121927-12125865[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1 3e+03 -2.2 0.1 4 14 72 82 71 87 0.83 2 3 1.6e-17 4.5e-14 51.7 3.2 1 34 131 163 131 165 0.97 3 3 3.6e-19 1e-15 56.9 3.0 1 35 225 258 225 259 0.98
Sequence Information
- Coding Sequence
- ATGTATCAGTCGAAGAATTACAGCTACTTAACCAACACGTCGTCGAACGTGGCAGACCTTTCGGCAACGGGTCAACTCTGGCAAAATCCAGATTCCGACTGCAACAAAACGTCTCTGCCAGCTTTTTCCAGAAGATTTTCGACGACGAACCGTATTCACCCATACGCCATACACAGAAGTTATTCGACCACTAATACGTCAGGATATTTAGCTTGTCCTTCCGAGAACTCATCTCACTGGTATGAACAAACCGGGACTAACTTACCTCACTACAGCATTATTGGCGAGATCGGTGGAACGACGGCTCGATCTAGGCCTCAAAATACGTTGTCATCACCGATTTCTGCTTCAGCCTCTTTGTCAGCCTTCGATTACTCCGAAGGAAGAGAATGCGTTAATTGTGGGGCCGTTTCGACACCGCTTTGGCGAAGAGACGGCACAGGTCACTACCTGTGCAATGCATGTGGACTCTATCACAAAATGAACGGGATGAACAGGCCGCTGGTCAAACAGCCGAAGCGGCTGACTTTATACTGTGTTGCAGTGGCAGGAACGGGGCCCCCTCCTGATCTCTACAAGGGCTGGGCTTATCCTGATGCCAGGGCAGTTACTTCATCTAGGGAAGAAAAATCATCTCGGAGACTGACTAATAACAAAAGATTAGGGCTCCAGTGTTCTAACTGCAGAACTTTGACAACCTCTTTGTGGAGAAGGAACTCAGTAGGTGAACCTGTATGCAATGCATGTGGTCTTTACTTCAAACTCCATGGAGTCAATCGGCCGTTAGCTATGAAGAAAGACAGTATACAGTCGAGAAAACGGAAACCGAAAGGATCGTCAAAGAACGACAACCTCGGAAACGGACCTGGTCCAGGATCGCACTCTCCAGCGTTAGCTGCAGGAGCAACAGGAAAACGCATCAAACAGGAACAGAACGACTCTTTCGGAGACAATAGAAACAGTCATCATCATCATAACAATTCACTCGTAACGAATACGCTAACAGCTTACTCAAGTCTTTATCCTCAGTGTGGGAATCACGAGGCTCAGTCAAGACTATTCGCACCGCCGTACCACACTCAGATCTCACATTCGGCTTACTACGATTTCCCTCCAGGGTCTCCCGTCGATACGGATGGTCTGACTCCCAAAATGGAAGAACCTCCGTCAAATTCCTGTAGTTCTCCATCGTCTCCCAAAGTCGTGTCTCAAGATCCGTCGTCACAGGTTGAACGACCCACCGTCGTATCCCTGACGTCATGA
- Protein Sequence
- MYQSKNYSYLTNTSSNVADLSATGQLWQNPDSDCNKTSLPAFSRRFSTTNRIHPYAIHRSYSTTNTSGYLACPSENSSHWYEQTGTNLPHYSIIGEIGGTTARSRPQNTLSSPISASASLSAFDYSEGRECVNCGAVSTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPKRLTLYCVAVAGTGPPPDLYKGWAYPDARAVTSSREEKSSRRLTNNKRLGLQCSNCRTLTTSLWRRNSVGEPVCNACGLYFKLHGVNRPLAMKKDSIQSRKRKPKGSSKNDNLGNGPGPGSHSPALAAGATGKRIKQEQNDSFGDNRNSHHHHNNSLVTNTLTAYSSLYPQCGNHEAQSRLFAPPYHTQISHSAYYDFPPGSPVDTDGLTPKMEEPPSNSCSSPSSPKVVSQDPSSQVERPTVVSLTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -