Ccol004551.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- gata5-b
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000011.1:9118642-9121505[-]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.1e-17 2.6e-13 49.2 5.4 1 35 286 319 286 320 0.97 2 2 7.2e-19 2e-15 56.0 6.2 1 35 357 390 357 391 0.97
Sequence Information
- Coding Sequence
- ATGACCCATGCGGAGAGAGACCCAATGCTAGCGGACACATATCCGGGAACACAAAAAGTGATTTCCTATCCGATGGACTACCAGAAGATAGTCAATGCGGAATACCACGTCAAATATGAAGAAAACCCCGAGCACATGACCAACAGACCGGAAATGGATCAACAGAGTCATTTGATAGTGAAAAATTCAAACCACATAGTCCAGACGGATTCGCTTCAAACGTCGATGGCGGAAACGGGTACCACGACGTATACGACACTCCAAACGGTTTCGCATCCGCCTTCGAATGCTTTCAACAACCTCTATCCGGCTAACGAGTATCATGACAACTACGTACAAAAATGTCCCAATCCGGAGATGTACGAAATAAACCGAGGAAACGAAGACATGTACGCCAAATCGAGCGGGATAAGTTACCGTACGAAACCGGAAATAAACCACGGTTACGTGCAGAAGGTTGAAGGTTCCGTCATCGGCTACCCAGGTTCCTATATCCACGAAACAGGTCAAAGACTCCCAGCTATAAGCGCTTCCGGTGATGTTCATACTCAGTTCGTTATAAAGCATGACACATCCGGTTTAGGAAACAAACAGATCTCAGAGCAATTTGTTCTTCCATACGACCAACAACCTCATCCAAACTCGCCTGGTTCAAACACGATCACCGTCTACGCTCCGACCGAGCCTCAGTATCAATGTCCGGTATCAGCAACCACCTACACGCCAACTTCAGCTGTTGAGTATGACTCGTATGCCGAGAACAACCAACACCAGGTCAACAGTTATTCTGACTACGTTCCTAATGCAGCTTCTACTTCTTGGGGGGTCGAAAACTACATGAACGATGTGAAGGAATGCGTCAACTGTGCCACCTGTCGAACGCCTCTTTGGAGGAGAGACGACGATGGACATTATCTATGCAACGCATGCGGTCTGTACAATAAAGTTAACGGAGTTAATCGGCCTCTGGTTAAGGCCAACAGTAAAAAGTACAACAGCGTGAGTAGTTTAAACTCGTCCAACCCTCTCAATGAGGCACCGACAAACAACAGGAGAACGGGAGTCGAATGCGCCAATTGTCACACGACGAACACGACCCTCTGGAGGAGGAACAATACAGGAGAACCTGTATGCAACGCCTGCGGACTTTATTTCAAACTCCATAATGTTCCAAGGCCGTTATCGATGAAGAAGGACGGTATCCAAAGTCGGAAACGGAAACCGAAAACGGGAACCATGACTCAGATGATGAAACATCAAAAAACTCATCACGGTAGAATATTAAACATCGAAATGGAGCCGAACATGACGAGAACCTATCCGCACCACCTCGATTTCAGGAGTTCGTATCCGTTGATAATGGGACAAGTGGAAGACCATCTCATGTCTTCGGAAGATCAGATTCAGCCTGCGCCCAGTCCCACACTACCATCCTCGACTTTGCTGAGTAGGCAAATATCTCATGTTCCTCCAATCGAACCAACCTCTCTGCCTCTTCATGGCTCGGGTGAAAGCGAAATGATGACAGCCAACGGAGTCATAATCTCTAGGACGCATGGCCAACAGACCAATTCTGAGAGTTACGAAGCTAACAATTAA
- Protein Sequence
- MTHAERDPMLADTYPGTQKVISYPMDYQKIVNAEYHVKYEENPEHMTNRPEMDQQSHLIVKNSNHIVQTDSLQTSMAETGTTTYTTLQTVSHPPSNAFNNLYPANEYHDNYVQKCPNPEMYEINRGNEDMYAKSSGISYRTKPEINHGYVQKVEGSVIGYPGSYIHETGQRLPAISASGDVHTQFVIKHDTSGLGNKQISEQFVLPYDQQPHPNSPGSNTITVYAPTEPQYQCPVSATTYTPTSAVEYDSYAENNQHQVNSYSDYVPNAASTSWGVENYMNDVKECVNCATCRTPLWRRDDDGHYLCNACGLYNKVNGVNRPLVKANSKKYNSVSSLNSSNPLNEAPTNNRRTGVECANCHTTNTTLWRRNNTGEPVCNACGLYFKLHNVPRPLSMKKDGIQSRKRKPKTGTMTQMMKHQKTHHGRILNIEMEPNMTRTYPHHLDFRSSYPLIMGQVEDHLMSSEDQIQPAPSPTLPSSTLLSRQISHVPPIEPTSLPLHGSGESEMMTANGVIISRTHGQQTNSESYEANN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -