Ccol006423.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- -
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000005.1:723689-744631[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 5.6 4.3e+02 1.6 1.0 1 23 68 91 68 91 0.92 2 23 0.17 13 6.4 4.2 1 23 98 121 98 121 0.95 3 23 0.28 21 5.7 2.3 1 23 183 206 183 206 0.97 4 23 0.013 1 9.9 0.8 2 23 240 261 239 261 0.97 5 23 1 79 3.9 2.1 1 23 267 289 267 290 0.95 6 23 6.5 5e+02 1.4 2.0 2 23 402 424 401 424 0.95 7 23 0.18 14 6.3 5.7 2 21 635 654 634 655 0.94 8 23 7.6 5.8e+02 1.2 1.4 1 23 783 805 783 805 0.78 9 23 0.015 1.2 9.7 0.1 1 23 1099 1121 1099 1121 0.94 10 23 0.15 11 6.6 0.2 1 23 1129 1151 1129 1151 0.97 11 23 0.16 12 6.5 2.1 1 23 1189 1211 1189 1211 0.97 12 23 0.00045 0.035 14.5 2.9 1 23 1218 1240 1218 1240 0.99 13 23 3.9 3e+02 2.1 4.4 1 23 1299 1321 1299 1321 0.98 14 23 0.026 2 9.0 0.2 2 23 1340 1361 1339 1361 0.96 15 23 1 79 3.9 1.1 3 23 1453 1473 1452 1473 0.96 16 23 0.0052 0.39 11.2 1.6 1 23 1479 1501 1479 1501 0.98 17 23 2.6e-06 0.0002 21.6 2.0 1 23 1595 1617 1595 1617 0.98 18 23 0.0093 0.71 10.4 2.1 1 23 1703 1725 1703 1725 0.97 19 23 0.00066 0.051 14.0 3.1 1 23 1731 1753 1731 1753 0.99 20 23 0.12 9.6 6.8 0.7 1 23 1829 1851 1829 1851 0.98 21 23 0.042 3.2 8.3 0.9 1 23 1861 1883 1861 1883 0.95 22 23 0.0013 0.096 13.1 1.3 2 23 2022 2043 2021 2043 0.96 23 23 0.0017 0.13 12.7 2.4 1 23 2049 2071 2049 2071 0.97
Sequence Information
- Coding Sequence
- ATGGCTCATCGATCCGACGACGACGTTGAACTGGTGCGCAGCGGCAGCAGTCCTTTGGTTGACGAGGACACTCTAGAGAAAAACGCTTCTCCAGTTTACAATGAAAATGAAACTGGAGGTGAAGATGTCGGTAATGAAGTCTTTGCAGCCGACAATGGTGACGAGGATGCCAACTTACCTCAGTGCAAAATAAAAAGGAATTATTCCTGCAGTCTTTGTCCATTTTTCTCACAGAATCCGAGGTCCTTTTTGTACCACTCTAGAGACGTTCATTTTGATCCAATTAAGATCTTTGAATGCTCTTACTGTCTTTATGCATCGAAGCACTGTCAGAAACTCAAACGACACATTGTTATGGTTCACGTGGCAGGAAAAAATAGGTTAAAGAGAGGAGTAAGACTTACCACAAAAGACTTGAGACCCATCAGGCCGAAACCATTGCCGCCACAAACCTACATTTTGACCGAGGGGAGTCTTGTGTCAGAAGAGCAGGAACCTTCTCAAATCGATGATGAATCCGAAATCGAAGAAATTGTCGACGGTGAATACAAGTGTTCCCTTTGTAATTTTAAAAATAAAAGTCAAAAGTTGATGCGAAGGCACGAAAGAATAGTTCATCTTAAAAAGATGTTTTTGCGGTGTAGCAAATGTTCTTATATGACTCACGTCAAAGCTAGGTACACAAAACATGTGAAATACCATTCCATGCCTATGATCAAATGCGACTTATGTGATTTCCGAACGCCTTACAAATGGAATTTAGATCGCCATTACAAAAACCATTGCGGCTCCGGAGCCTTCCAGTGTTCAAAATGTAACTTTCGGGCGGACATAAAACAGAGTTTGACGGTTCACGAAATGAACCATCACGTGCCTCCTGTTGGCCAAGGAGCTGTTATGGCGCGAAAGAAAAATAAAGTGGGATCCTCCGAAATACCGTCTGTTGCGTCTGATACAACTGAAAGAGAAAAATCGGAAATTGCGATGGAAAGCAACGAGGAGTCCGAAACTCGTGACAACCAAAAGGCGGACACGAAAGAAGAACAAAAACGGGAGAAAAGAACAGGTGTTCAAAGCAATCACAACCTAAAATCGACGTATGGTAACAAACGAGAAACGACTGGTAACAGCCACTTGCAAACAGATTTCATTCATCCCGACGATATAGTGCCCAGGTATGGTCAGATCTTCGTGAAGAACTTGAAATGTAAATTTTGCAGCTATAAAGCCGTCTTTAGTCACGAGATATGGAGACACGAGAAGAGGATCCACGGCTACGTCCGTCCTGAAAACAAGAAGGAAAATGCTCCTAAAAGGCCGCCCCCTAAATTGATTCCTATCCAAAACAAAGCAGGGCCTCCCGGCTCCGTTTCGTCTCCAATACTTAAAATTCCAGAGGTGAAGAGCAAATCCGTCGTTTTGTTTCCGGACTCATCTCCTAGCCCCGATAAATCCGTAAATGACAATGAATTCAATGAGATGTGCAAAAAATCTAGTTTGACGAGTTCGTTGAAAGATTTTGTGTCTTTAATCGGAGATGAAGAAGGTTTGAAAACCATTCCTGATTCCTCACGTGAGGAAGACTTGCCGGAAGAGTGCTCGGTAATCAAGACAGAAGCTGTCGAGGATGTCGATACCAAAGGCGACGATTTAGCCAAACAGAAACAGACGGATTTAATGAAGAAGAAAAACGCGTCTTTTTTCGATAAGTTGAAGGAAAAATTGTTGACCAGTAGTAGCGAGGAGCAAAGTCTATTTTGTGAAGAATGTGCGCACGAGTCAAAATGTTTGTCAGAAGCTGTCGCTCATCAAAAACGACATTCTAATGCTAATAATAAGAGCGAGGTTGACGGTCATTCGGAAAACGATGTCGTTGTTTTGGGAGTCAAACTGTCTTCCACCAGATGTCAGCATTGTAGACAGCGCTGCAAAACAAGCACTGACTTATTTAATCACCTCAAGTCTTGCAAAGCCTTTGGTGCTGCTCAAGAGCTCCAGACATCTCTGGACGGGTATGTAGATCGTGAGATAAAATGCGAGCCTGATCTGAGCGACAAAGAAGAGAAGCACGACGAGAATGAAAATTCTATGGAAAATCGGGTTTTTGTCTGGAACGATTTGGGGCGAACGCCGGTTGAAGGCGAGGAAGAAGTTGATGAGGATGACGAAGACGGAGAAGAAGGTATGGTTGTAGACATTCCGTCGAATGAAGATGCTCGAACTGATTCTGATTCAATGTCTGGTGCCGTAATAAGTAAAGACGACCAAAAAGGCGAGAAAGACGTAACATCCACCCCGGAAACCGGCGGGTCGGGACGCCGATTCAAACTGCCGGTCAAAAACGTATTTAAATGCCCTCATTGTTCGTTTTGGGCATCGACCGCTTCTCGGTTTCACGTCCACATTGTGGGTCACCTTAACAAAAAACCATTCGAGTGTTCTCTTTGCATGTATCGCTCCAACTGGAGATGGGACATTACAAAGCACATCAGACTAAAGTCTGCTCGTGATCCAAGCCATTTAGAAGCTCGAGTGAATATGACCGACGAAACCGGTCGTAGAAATTATTCCAAGTACAGCAAATATTTGACTCTGATGAAGGTTCATGCACCTTCGGCTGAAAGCAGTGGAACGGGAAAAAGATCGGGAAGACCCAATGAAATAACTCAAGGCAATGTTACCGAAAAAGGCGTGATCACGCTTCCAGCACTTCCCAGGCTCACGAGAGCTCCCACGCCAGGTACATCCAATCAGGTTCCAGAAGGGCTGCCTTTGAGGCCTCCCCCACCTTTGAAAGCTGCCCACTCAATTTCATCAAATTTGCCAACCGAAGATCAGTCTGAGGTGTCACAAGATTCTAAAAAATCCTCCAAAAAGACTTTATGGAAATGTAAAAGGTGTGATTTCAGGGATTCAGACAAACACAGTGTCCTTTCGCACGTTAAAAATCATTATGGGAAGAAGAAGAAAAATATTTCACGGGCAAAATTTACTTTTTCGGAACATTTTAGCGATGAATCGAATCAGTCTCAAGATGCATCAGCTTTTATCGAAGAGGATGAAACTTCAAGAGGAAAATCAGCTTCAAGAATTTCTTTCAAAGAAGTTTCTTACAAATGCGGTCATTGTCATCAGGCATCCCCTTGGAAACATGTGATACAGCGTCACTGCAGGCTTAAGCATAATGGCAACGCCCTGATCGAAGTGGGATGGCGACATGAAGAAGTTGCGACTTCGCATGATAAAGAAAAAATTCCTGGCGACACAGTACCCGGAGACGGTGGTGTCAAACTCTTTTTGTGTGACATCTGTCCTTTTACCACTGATTCAGAAGGAAATCTCACAGCTCACAAACTGAATCATATTGATCGCCCGGGTTCCATCTTTAAATGTACATACTGTCCATTTTACGTACCGAGCAAAATAGCCGTTCTCGAGCACATGCAACTTCACGGAGTCTTTGGGTCTAGATTCAAAATACCTACTTCGAATTCCGATGATTTGGACGAGGAGGATAGTGACGACAATTTATCTGGTGAAAGTCCTGATACTTCCTCGCAAAAGTTCAGTTGCAAACAGTGCCCCTACGTTTCCTCCGTAAAAACGCAGTTCCTCTACCACAAAAAACTCCACATACCTCGCGATACGCCGTTCAAATGCAAGTACTGTTCGTATAATGTGACTCGACCTCATCTTCTTCGTGAGCACCTTAAAGTTCACTCGATTGTAGTTACAACAGAAAGTTCAGATGAAATCACGGAAGAAAGTATCGAAGAAACAACGACACCGACTACGACAGATTTCAAGCTGAAGGCTCTTCGCGAAATCGACCAAGTAGCTTTGCAAGATATACCTCTAGTTTGGGTTCTCAGAGCTGGAAACTGGAAAAAAATGTTCAAATGCCGACATTGTCCGCACATGAATGCGAGGAAGACTAACATTCAAGAACACGAAAAGATGCATCAAGGAAACGAGAGAAAAAATGATGGAGATTCTGGGCAGGGGAGTTCGGAACTCCGCTGTGCGGATTGCAGCTACTCCTGCAACAACCCCGGCGTGTTGGCATCTCACGTTAAAGTTCATCAAGAGGAATATGGACTGGTTGCATGTTTGGTTGATCGTGAAAGACCTGACACCGAACAAATTGAAGAATTACAAAAGAGAGTGAATATAGAAAAGCGGTGTGTGATCGTGAAGAAGGCGGAGATCGAGAGCGAGACAAAAGAGCCCCAGCACAAGGATAGAAGGATGCAGGACGATTTTTTGTCCTCTCAACCAGAAAACGCGTACAGGCGGACCACGAATAACGAAGAAGACAATGCGGATGACGAAAAAGAGAAAAAAGTCCTCAGTTTCTGTGATAAGTGTCCGGCCCGATTCTTCTTTGACAAAGAACTGACAATACATTCGAGGTTTCATGGCATTCACCTACCGTTCCAATGCGTGTATTGCTCGTACACTGCCAGGCAAAGACCACACCTCCTCGCTCACTACAAGGTCCATAGCCAGGAATACAAAGAAAAAACCGAGCAACTCGTCACCACTTACGATGTGTCGGAAGATTGGCCTCGTCCTCAAACCAGCATTATCTCGAATGAATCTGACCTGATCGAAGGACCCGTTTGGATGGTGACACCTGTCGACGACACCAAAGAGAAATCAAAATCGGAGGGAAACCCAAATAAGCCTACTGCGAAATTTGCTTGCCACCTTTGTCCTGCCAAATTGTTCAAACTCCTGGCACTCAAATATCACTTGACTCTTCACGGAGGTTCCCATCGGTACAAATGCAAATACTGCAACTACTCCGTAAAGACCCAGGGAAATTTGACGAAACACCAGTTGATTCACGAAAACGAATCTGAAGGGAAAGGCTCTGAAGACTCGATACGTTCCAACTCGGTTCAACGTTCTGCTAGGGAGTCCCTTTACCGTCGGACAGAAACCCGAAGCAAAAGCTTACCTGAAGTGCATAAGAAGTGCGATTCAGAGAAAGTCACGAAAACGAAAACGAAAACGGATCCCCAATTTGGTTCTTTGATGCACGGTTCCCCCGAGTTTATCTACCCGACGTACTTGAAAAATGGGAAAATCAAAGAGAAGAAGTACAAGTGTCACAAATGTCCATCGGCCTTCGAAAAACGCGAGCAGTACAGGATACATGTTTCACTTCACGGGTCCAAACAAAAATACGAATGTAAGAAATGCGACTACTCCGTTAAATACTTCGCGAATTTCAGTCAGCACATGAAAAAGCACAAAATTCACGAGCAGGCCATGAGAAGTCAAAAATTGAAAGACAAAAGCTGTCCTCTTGAGAAAGTTAAGACCTCAGATAAGTCGTCAATCGTTGAGGCTTCATTCGTAAATATTAGGAACGAATTGAAAGGTTCCAACGACGAACTCACCCTCATCGAACAGCAGACTCTCATGTTTCAGGGGTATAAAATGACACTCGAAGGGAAGGAAGAGGCGAGAAAGATGTTCAGCTGCCAGTACTGTCCGTACATAAACAATCGAAACGACAACGTAAGCAATCATGCCCGACGACACTTCAGCGTATCTGGTGTTACAGCGGGATATCGGTGCCCTCACTGTGATTACTCGGCAAACCAGGCCAACTTCATTCGGGACCACGTAAAGCTTCACTTCCGTCAGTTGGCTTGTCCGAAAGCCGAAGCTTACTTAAAATGCGACAAAATGGAACTGTGGTGCTTATTGGATAAGAATAAAGAGGATGTGCGAGTCTCACAATTGGAATCGAAAATGCTCGTGTTCCAGGACAGGGGGGAGGAAGCGGAGGATCGGTTTTTCCCACCTCTTTCGCGTGTAAACCCTGAAGAAGACGAGAACGACAATTGGCGGATATACATCAATCCAGAAAATGGTCAACCCAACGGAGATTTTCCGTTTCTGACAGCAGAGAGTGATTTTCCGATGCCCGAAAACTTTTGTGAATTCATGGAAATGTTCCAGGTTCATATGAAAGAAATGTTCAAGGACTCTTCGACAAAAGAGCCCAAGGCAAAGATTAAGACGAAAAGGTCGAGGGGGAAGAATTGGAAGTGCAAGAAGTGTCCTCATGCTTTCGGAAAAAAGGATCAGTACATGAGACACATCGCTCTCCACGGATCCAACCAAAAGCACAACTGCGACATTTGCGACTATTCCGTGAAATTTTACTCGACTTACGTTCAGCATATGCGAATGCATCAAAATCACGAACCAAACAGGCTCATCAGGGTGAAGGAAAACTTCCAAAGTTTGGATGAGAGTTCTTCGAAACACAAGAACCCCATCAGTCCTGACTGCTTGACAGAAACAGAGAACACGAAAAAAACACAGGAGGTCGAAGACGTTGAATCAGACTCTTTCCTCGAGGCAGAAGAAAAGTCGTTAGCTGCGTGTAAATATGAAACCGATCAGGAGTATTCAAGTTGGACGGATGGAACGGAAATATCCGTCTATTCTGGAGACGATGGTCCTTCCGGCGAAGACAACGAATTCCTGAAGAAGAAGATGGAACTGGATGAAGGAGTTTCAGTGAGTCGTAACTGA
- Protein Sequence
- MAHRSDDDVELVRSGSSPLVDEDTLEKNASPVYNENETGGEDVGNEVFAADNGDEDANLPQCKIKRNYSCSLCPFFSQNPRSFLYHSRDVHFDPIKIFECSYCLYASKHCQKLKRHIVMVHVAGKNRLKRGVRLTTKDLRPIRPKPLPPQTYILTEGSLVSEEQEPSQIDDESEIEEIVDGEYKCSLCNFKNKSQKLMRRHERIVHLKKMFLRCSKCSYMTHVKARYTKHVKYHSMPMIKCDLCDFRTPYKWNLDRHYKNHCGSGAFQCSKCNFRADIKQSLTVHEMNHHVPPVGQGAVMARKKNKVGSSEIPSVASDTTEREKSEIAMESNEESETRDNQKADTKEEQKREKRTGVQSNHNLKSTYGNKRETTGNSHLQTDFIHPDDIVPRYGQIFVKNLKCKFCSYKAVFSHEIWRHEKRIHGYVRPENKKENAPKRPPPKLIPIQNKAGPPGSVSSPILKIPEVKSKSVVLFPDSSPSPDKSVNDNEFNEMCKKSSLTSSLKDFVSLIGDEEGLKTIPDSSREEDLPEECSVIKTEAVEDVDTKGDDLAKQKQTDLMKKKNASFFDKLKEKLLTSSSEEQSLFCEECAHESKCLSEAVAHQKRHSNANNKSEVDGHSENDVVVLGVKLSSTRCQHCRQRCKTSTDLFNHLKSCKAFGAAQELQTSLDGYVDREIKCEPDLSDKEEKHDENENSMENRVFVWNDLGRTPVEGEEEVDEDDEDGEEGMVVDIPSNEDARTDSDSMSGAVISKDDQKGEKDVTSTPETGGSGRRFKLPVKNVFKCPHCSFWASTASRFHVHIVGHLNKKPFECSLCMYRSNWRWDITKHIRLKSARDPSHLEARVNMTDETGRRNYSKYSKYLTLMKVHAPSAESSGTGKRSGRPNEITQGNVTEKGVITLPALPRLTRAPTPGTSNQVPEGLPLRPPPPLKAAHSISSNLPTEDQSEVSQDSKKSSKKTLWKCKRCDFRDSDKHSVLSHVKNHYGKKKKNISRAKFTFSEHFSDESNQSQDASAFIEEDETSRGKSASRISFKEVSYKCGHCHQASPWKHVIQRHCRLKHNGNALIEVGWRHEEVATSHDKEKIPGDTVPGDGGVKLFLCDICPFTTDSEGNLTAHKLNHIDRPGSIFKCTYCPFYVPSKIAVLEHMQLHGVFGSRFKIPTSNSDDLDEEDSDDNLSGESPDTSSQKFSCKQCPYVSSVKTQFLYHKKLHIPRDTPFKCKYCSYNVTRPHLLREHLKVHSIVVTTESSDEITEESIEETTTPTTTDFKLKALREIDQVALQDIPLVWVLRAGNWKKMFKCRHCPHMNARKTNIQEHEKMHQGNERKNDGDSGQGSSELRCADCSYSCNNPGVLASHVKVHQEEYGLVACLVDRERPDTEQIEELQKRVNIEKRCVIVKKAEIESETKEPQHKDRRMQDDFLSSQPENAYRRTTNNEEDNADDEKEKKVLSFCDKCPARFFFDKELTIHSRFHGIHLPFQCVYCSYTARQRPHLLAHYKVHSQEYKEKTEQLVTTYDVSEDWPRPQTSIISNESDLIEGPVWMVTPVDDTKEKSKSEGNPNKPTAKFACHLCPAKLFKLLALKYHLTLHGGSHRYKCKYCNYSVKTQGNLTKHQLIHENESEGKGSEDSIRSNSVQRSARESLYRRTETRSKSLPEVHKKCDSEKVTKTKTKTDPQFGSLMHGSPEFIYPTYLKNGKIKEKKYKCHKCPSAFEKREQYRIHVSLHGSKQKYECKKCDYSVKYFANFSQHMKKHKIHEQAMRSQKLKDKSCPLEKVKTSDKSSIVEASFVNIRNELKGSNDELTLIEQQTLMFQGYKMTLEGKEEARKMFSCQYCPYINNRNDNVSNHARRHFSVSGVTAGYRCPHCDYSANQANFIRDHVKLHFRQLACPKAEAYLKCDKMELWCLLDKNKEDVRVSQLESKMLVFQDRGEEAEDRFFPPLSRVNPEEDENDNWRIYINPENGQPNGDFPFLTAESDFPMPENFCEFMEMFQVHMKEMFKDSSTKEPKAKIKTKRSRGKNWKCKKCPHAFGKKDQYMRHIALHGSNQKHNCDICDYSVKFYSTYVQHMRMHQNHEPNRLIRVKENFQSLDESSSKHKNPISPDCLTETENTKKTQEVEDVESDSFLEAEEKSLAACKYETDQEYSSWTDGTEISVYSGDDGPSGEDNEFLKKKMELDEGVSVSRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -