Ccol015164.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- -
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000002.1:8157293-8182986[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.83 63 4.2 2.2 1 23 507 531 507 531 0.89 2 12 1.9 1.5e+02 3.1 4.2 1 20 653 672 653 677 0.92 3 12 0.0001 0.0077 16.5 3.0 1 23 735 758 735 759 0.96 4 12 0.015 1.2 9.7 0.7 1 23 770 793 770 793 0.96 5 12 0.34 26 5.5 1.4 1 21 801 821 801 825 0.90 6 12 0.69 53 4.5 1.1 3 21 874 892 873 897 0.88 7 12 0.0019 0.15 12.5 0.1 3 23 949 968 947 968 0.96 8 12 0.035 2.7 8.5 2.9 1 23 974 997 974 997 0.98 9 12 0.00014 0.01 16.1 1.0 1 23 1071 1093 1071 1093 0.97 10 12 0.0056 0.43 11.0 4.5 1 23 1099 1121 1099 1121 0.98 11 12 0.0025 0.19 12.2 1.5 1 20 1127 1146 1127 1148 0.95 12 12 0.49 38 4.9 1.3 1 23 1158 1181 1158 1182 0.93
Sequence Information
- Coding Sequence
- ATGGAGGACTCCAATTACTTCGTAAAAGCCGTCGGGCTCGAAAGTTACATTAGCCACGAGAAAAACTTCTGCAGTTCTCCCTCGAGAGTGGACATGAACAATTTAGACTACAACCAGATAGAAGAAAGCGTTCAGAGTGATAAGGATGGGATTTGCGACAAACAGGATGTGATAAACTATGACGTCACTGCCAATATTGAGGCCGACGATTTCTTTTCTTCTCTGGAACTTCAAAGCAGTTCCAAGATTTCGTCGACCATGTTAAGTCTGAATTTTCCGAGCAAGTTGTGGGGAGGAATTGTCACACGAAGTAGGGCGTTTTCTTGGACACTTCCTGAAGCTTCCAGAACGAATGGGAGATTTGAGCCAAAGCCAAAGGTGAAACGAAAAGCTAAGAATAACGTGAAGAGAAGAAGAAGCGAAAGACTGACAAATTCTAGAAAAACCAAAAGAAAAGCTAAAAGCAAGAAAAGACAAAAATCTCCAGAGAGGAAGGACAAAGGCTCGACAATTTCTGAGGGAAAGAAACAAAATCAGAATAAATTAGATGAACCCACTGTTGAAAAAGGTTTAGGATTCGACAAAAGCAAAGATGACAACGACTGGGTGTTGTTCAACCAATTGGGTTCGAGGAAGGAAATGGACGACAAACTGTTCGAAGGAAAACACGTTCTGAGTAACGATGTCCAAAACCCTATCAAGAGAGCAACACCCGAACTGTTCGCAATGAGTCCTATTCTCATGAGCGATGCCATGTCCGAGGGAAGAGATGAGGTCGATAAGCTCCTAGAAGTGGAAGACTATGACGATGATCCATTTCTGGAAATCGACGAATTTAATTACGCTCCACCTCGATCGCACACAGGTGGGAAGTGGAAGCCTGGAGGTTTATCCATCAGAACGTCTCCCATGTTATGGCAAAACCAAACCTGGGACACATTGTTAGACGACAGGAACCAATACGAAGATGGGAAAAGTCGAGCAGAAACTCCGATCGAATCTCCTACCGAGAGCGGGGACAGGGTAAAAGATAGTAAGTCTCCTTCGACCATTCCTTCGGGTGGCAAATGGAAACCTTCCGTTCCTCCCGCTAGTCATACAGGTGGGAAGTGGAAACCAGTCACTCCTCCTGCTACTCACACAGGCGGAAAGTGGAAACCTCTCACCCCTCCAGCCACGCATACAGGTGGTAAATGGAAACCTTCTGACATTCCCCAACGTTCAAAAAAATCAGAGCCCGATTTGTTATCTGCCGATGATGGGGATCATAACTCAGAATGTTATAGTCGGCAGGAAGTCGAACCTCCAGCAACTCATACTGGAGGAAAGTGGAAACCCAGTTCTAATCTAAATCACAGGAGCGAATCAGAAGAAAGAGTTTCACACAAGTCAAAAGAAGACGCTTCAGTTTCCAGAAAAAGTTCCTCGGGTAATAGATCCGCTTTAGATGTGTTAAAAAATCAGAGTACTTCTGGTAAAAACTTCAGGTGCTTAAAAACTTCCGGAGGCACGGTACAGTATCACTGTTTACCTTGCAACAGGAGATTGTCATCCAAACAAATGTACAAAAGCCATATTCAGACTGATCTTCACTGCAGGAGAGTTCTTCAAGAAAGCGATTTAGAATACGATTCTAGGGTAGTGAAGTTATATCAGCAAAATAAAAACAGAGAACGAGAACCGGGTAAACGGATCATCAAAAAACCAGATTTATACAAAGACACTGATATGATATCAAAAAAGGAACCACAAAGCTTACCTACAATTAGAATGAGAGGGAAAAGGGTGTCAAAACGAGAAATCATTCGATGCGACGTTTGCAAGATCAAGCTACCCACACACCAACTTGGGAAGCATCTAGTATCCTATTACCACAGCAGAAGAATGAAACCGAACGATCCCGACCAGCAGGAACTCATATTAAAAAATATACATAGTATTGTGAAGCAAGCTCCCTATCAGTGCGGAACCTGTAAATTCTATTGTAACACGCACACGTTGTTTAAGAAACACTGGGCACTTCCTGTTCATCAATACCTGGAACAGTCAGGGGATCATAAACGAAGGTTTTGGTGCGCGTTTTGTAGTTACGAATGTGAAACGGCTAAATCTATGGAACTTCATCTGGACAGTAATTCCCATCGAGAGGTCATTTGGGCTGTGAACAAGTCGATGCCTATAATCATAAGACACAAAATAATTTTCACGTGTAAAATCTGCGACAAGGAGTTTCGTTTCAAGCGGGGATTGATTGAACATCAAGAGCGTTACCATCACATAAAGGTGGGCGAAGATCTGACAAAACGATATGTTTGTTCTCTCTGTCAGAACGCTTGTAAGAGCTTGAAATCCCTTCAGATACACGTTCTTAGTGCGCACAAAAATGATGCCAAAATCCCTTATTTCTGTCGCTTTTGCGATGAGTATTTCTCGTCGGCGATGGAAGCCAGACACCACAGAAACGGACAAGTTCACAAATACAAGAGAGGTCTATCGAGGGCGGGTAGTACTCCGGTGAAGGGCTTGTCGAGAACTTGCGTTTACTGTCTAGATAAGTTGGAGAATATAGACAAACTTAAGAGTCATTTCGTGGAGAAGCATCCGGAACATCGACCCAGGTGTATCAAATGCGGAAAGGTTTTCGCGCTTTCGCAAGAAGTATCGCGACACGTTAAGAACAACGAGTGCCATTTCCCTAAGAGCCCGGACGAGTCGTCCAAGAAGTTGACAACTTCCCCCGACGCTTTGTCGTGTGACATGTGCGCGTTTGCGACTTTGTTTAGGTCCGAAATGCTCATACACGGAGCCATTCATAAAAAGAAAGACAATCACAAGAAGATGGCTTGTCCGATGTGCGGAAGTCAGTTCACTCAATCCGCGTTGAGAATTCACTTGAGGGCGCATTTAAACGAAATGATGTTCAAGTGTTCGTTATGCATGCGAGGATTCGTCAGGAAAGACAGATACGTGAAACATTTGAAAAAAAAGCATTTCATTCACAAGACTGTAGATCCGTATCTAGTAGAAGGTTCAGACAACGAAGACAAGGAATCTGAAGACGATCGGAAATCCGAGAAGGAAGGAAAGGCGGATAACTGGATTAAAAAGAAGAAGAAAAGGCGTAAATGCGGAGATCCAAAGTGTCGATTTGAACCCCAGGATAGTGAAGATTGGGAAAACCATCGTATCGTTCACATCGGACCCAGGACTTTCCAATGCACCGAATGCAACTATATCACTACAAGCAACACGACACTGAGACGGCATCTTCTGGCTCACGCGGATTCGAGGACTTTCCCATGTCCTCATTGCTCGTTCAAAGCCAAAATGAAGACTCACTTAAACCGTCACCTGAAAATTCATAGCTACGCGAAGCCGTACAAGTGTCCTTACTGCCCTCATACCTGTAACATCCTGGAAAATCTACGAAAGCACGTTCTCAACACGAAACAACACGCCGGGAAGAAGTTGTTCGAATGTAAGGAATGCAATTTCAAGACGAACATTTCCAAAGAGTTCGTTGTTCATTATGCAATAGAGCATCACGGGGATCCTAGAGACTCGAAAGAAGCTTACATCGCCGCCGGGTTGTACGAGAGAGAGGAAGAAAGCTTGAATGCTCCAAAGGGTATCCGGAGTTCAAGCGCACCCCAGACATCCGAGACTTCCAAAAAGACGAAGTCATCCATCTCGGACACCGACTTACTTCCGTATACTAAGAAATTCTGCCCCATCGCCCCGAAATCACCTTCGAAAAAGGAAGACCTGAAAAACAGTCCCCCACAAACGTCAACCAAAGTCGTAGAACTTAAGCTGAATAGAACGGAAATGGATGACGTCCAGCCGAAATCGTACCCATCGCCGGCTGAAAAGGAACTGAAAACGAAAGCAGCAAGGGCGGAACCAACGAATCAGGTAGAGGAGGTACGACAGAATATTAAGTCGGTGACTGGGAGTGATGGAAATCAAATTATGTTGCTGGACATTTCCTCGTCGAAGGTCACGCGAACGGAAGAAGAAGAAGAAGAAGGAGGAGGAACCAAAACCTAA
- Protein Sequence
- MEDSNYFVKAVGLESYISHEKNFCSSPSRVDMNNLDYNQIEESVQSDKDGICDKQDVINYDVTANIEADDFFSSLELQSSSKISSTMLSLNFPSKLWGGIVTRSRAFSWTLPEASRTNGRFEPKPKVKRKAKNNVKRRRSERLTNSRKTKRKAKSKKRQKSPERKDKGSTISEGKKQNQNKLDEPTVEKGLGFDKSKDDNDWVLFNQLGSRKEMDDKLFEGKHVLSNDVQNPIKRATPELFAMSPILMSDAMSEGRDEVDKLLEVEDYDDDPFLEIDEFNYAPPRSHTGGKWKPGGLSIRTSPMLWQNQTWDTLLDDRNQYEDGKSRAETPIESPTESGDRVKDSKSPSTIPSGGKWKPSVPPASHTGGKWKPVTPPATHTGGKWKPLTPPATHTGGKWKPSDIPQRSKKSEPDLLSADDGDHNSECYSRQEVEPPATHTGGKWKPSSNLNHRSESEERVSHKSKEDASVSRKSSSGNRSALDVLKNQSTSGKNFRCLKTSGGTVQYHCLPCNRRLSSKQMYKSHIQTDLHCRRVLQESDLEYDSRVVKLYQQNKNREREPGKRIIKKPDLYKDTDMISKKEPQSLPTIRMRGKRVSKREIIRCDVCKIKLPTHQLGKHLVSYYHSRRMKPNDPDQQELILKNIHSIVKQAPYQCGTCKFYCNTHTLFKKHWALPVHQYLEQSGDHKRRFWCAFCSYECETAKSMELHLDSNSHREVIWAVNKSMPIIIRHKIIFTCKICDKEFRFKRGLIEHQERYHHIKVGEDLTKRYVCSLCQNACKSLKSLQIHVLSAHKNDAKIPYFCRFCDEYFSSAMEARHHRNGQVHKYKRGLSRAGSTPVKGLSRTCVYCLDKLENIDKLKSHFVEKHPEHRPRCIKCGKVFALSQEVSRHVKNNECHFPKSPDESSKKLTTSPDALSCDMCAFATLFRSEMLIHGAIHKKKDNHKKMACPMCGSQFTQSALRIHLRAHLNEMMFKCSLCMRGFVRKDRYVKHLKKKHFIHKTVDPYLVEGSDNEDKESEDDRKSEKEGKADNWIKKKKKRRKCGDPKCRFEPQDSEDWENHRIVHIGPRTFQCTECNYITTSNTTLRRHLLAHADSRTFPCPHCSFKAKMKTHLNRHLKIHSYAKPYKCPYCPHTCNILENLRKHVLNTKQHAGKKLFECKECNFKTNISKEFVVHYAIEHHGDPRDSKEAYIAAGLYEREEESLNAPKGIRSSSAPQTSETSKKTKSSISDTDLLPYTKKFCPIAPKSPSKKEDLKNSPPQTSTKVVELKLNRTEMDDVQPKSYPSPAEKELKTKAARAEPTNQVEEVRQNIKSVTGSDGNQIMLLDISSSKVTRTEEEEEEGGGTKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -