Basic Information

Insect: Columbicola columbae
Gene Symbol: -
Assembly: GCA_016920875.1
Location: JADMLL010000008.1:2593252-2596554[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.0018 0.14 12.6 0.0 2 23 366 387 365 387 0.94

2 5 0.32 24 5.5 0.9 2 23 462 483 462 483 0.96

3 5 0.00021 0.016 15.6 0.3 1 20 489 508 489 511 0.93

4 5 1.3e-06 0.0001 22.5 1.8 1 23 516 538 516 538 0.98

5 5 0.19 14 6.3 0.6 2 15 542 555 541 557 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.0018	0.14	12.6	0.0	2	23	366	387	365	387	0.94
2	5	0.32	24	5.5	0.9	2	23	462	483	462	483	0.96
3	5	0.00021	0.016	15.6	0.3	1	20	489	508	489	511	0.93
4	5	1.3e-06	0.0001	22.5	1.8	1	23	516	538	516	538	0.98
5	5	0.19	14	6.3	0.6	2	15	542	555	541	557	0.90

Sequence Information

Coding Sequence: ATGAACTGTAAAGTTTGTTGTAACACCACAACCAACACTCCAGGGATTTCATTTTTTCGTTTCCCCAAGGAAGGAAAAAAATGCGAGAGATGGGCGGAGCTTTGCCATTTGAAATGTTTGTATGGGAAAAAGGGTACCATTCAGTTCCACAAGTCTTTTCGGATTTGTTCGGAGCATTTCGACGCGGATGAAATGATGCACGATGGAAGGAAAGTACGATTGTTTCCATCAGCTGAACCTAAATTTCTTTTAAAAAAGTACAGAAAAATAAAAAGGAAAAAGAAGGCTGTGATAAAGAAATTAAATATAGCTAAAATCACACTACCAAATCATTTTTGTCGTTTGTGTGGTGAGGAAAAAAAGGATGTCATCAGTATTTATGGATGGAGAGGAAAAACCACATACGATCTGGAAAAGAAGTTGAAATATTTTCCTTTTGCTATTGATAAATGTGACGTTCTACCACTTGGTGTTTGTCAAGAATGTGTTGTAAAAGTAGACCAATTTTTTGAGTTTATTGAGGATTGTATTAAAGCACAGACAAAACTGAAAGAGCTTTTAAATGATAAGATACATAACTTAACTGTTCAACTAGTTGATTCAGCTGACTCCAACTTAGTGCCAAATCAAGAAACTCATACTAGAAGTGGAAGTCAAGAACAAATACAAGGTGCTGACACAGGTGAAGAACAAAACACAACTCTAGATGCAGACCTAATAAACATAGATTTACTTCAACTTCTGAATGGTGATAAAACACAAACCCCAAATGTAGATGAAATACAGAATACAAGTTTTGCAATCCCTTTCCAGCTTCCACCAGATCTATATCATTATTTAATGAATTTTCCAATCATAGAGAAGAATCAAACTGAACAAGATTGTCCAGAGCCTGAGCCTGATCTAATGAAATTTACTGATGATGACCTTATAACATTGTATGATGACAATGATAATAAGGTAACTTTACACAGTGACCCCAATTTGAATTGTACATATGCGGACGTGCCAACATCTGGTCAGTTTCCTCCTCCTCCTCAAAGTACGGATCAGGCTGATGTAATTAACACAAATTTTGACAATATTAACGAACTCAATTGTGATGTTTGTTTAAAAGAATTTGAAACGCCCGAAATGTTAAACTCACATTTAATAGCTCATTCCGTTGAAACAAACGACAACGACTTCGCCAAATACACAACTGTCGATTTTCTTCCAGATTTTATTCAAGAGATTTCAAAAAAGGCCAAGGAATCGGATTGGAGAAGAGACTTCTCGAATACTGAACCACTGAAAGAGGAGCCTGAACGTGCAGGATCACTACCAAAGAGAAATAAACCAAGTTTAAAAAGAAAAGGGAAAAAAAGGAGAAAAACGAAACCAGAATGTGAGTTTTGTGAAAAATTGTTCCCAACCTTAGACGAGTGCGAAGAACACGAAAAAACTCACCAAGGAATACAGCGTTACGAGTGTTTAATATGCCAGGCAAAATTTCGCTCGAAGAGAGGTTTGCGTCGGCACATTCCCGTTCATTCGGGAGAAATTTTCCCTTGTCCACACTGTAAAACTATTTTCAGAAGAAAAGACTCATTACAAAACCATGGAAGAATTCACCGAAAACTTACCTGTAAAATCTGCAGATTTGTTTTCAAACAAAAAGATGAAAACTTCTTTACAGCCGAGTTCTTAAAACATGAAAAAGACCACGAGCTTCCCGTAGGCCTATCGACCGAATTGTATGATGCCGGACAAGCGGAGAAAGAATCATGTGAACCTGACTTACCTCATTCAATATCCAAGAGAGACAAACCGGTTTCTGAAGCTCCTGACGAATTTTTGGCGAACATCGACACAATCCAACCGACTTGCATTTCGGTTCCCGCTTCCAAGATGGATGACATAGAACAAATCGTCATGACTCAAATTGTCGCAATGGAAATCTAA
Protein Sequence: MNCKVCCNTTTNTPGISFFRFPKEGKKCERWAELCHLKCLYGKKGTIQFHKSFRICSEHFDADEMMHDGRKVRLFPSAEPKFLLKKYRKIKRKKKAVIKKLNIAKITLPNHFCRLCGEEKKDVISIYGWRGKTTYDLEKKLKYFPFAIDKCDVLPLGVCQECVVKVDQFFEFIEDCIKAQTKLKELLNDKIHNLTVQLVDSADSNLVPNQETHTRSGSQEQIQGADTGEEQNTTLDADLINIDLLQLLNGDKTQTPNVDEIQNTSFAIPFQLPPDLYHYLMNFPIIEKNQTEQDCPEPEPDLMKFTDDDLITLYDDNDNKVTLHSDPNLNCTYADVPTSGQFPPPPQSTDQADVINTNFDNINELNCDVCLKEFETPEMLNSHLIAHSVETNDNDFAKYTTVDFLPDFIQEISKKAKESDWRRDFSNTEPLKEEPERAGSLPKRNKPSLKRKGKKRRKTKPECEFCEKLFPTLDECEEHEKTHQGIQRYECLICQAKFRSKRGLRRHIPVHSGEIFPCPHCKTIFRRKDSLQNHGRIHRKLTCKICRFVFKQKDENFFTAEFLKHEKDHELPVGLSTELYDAGQAEKESCEPDLPHSISKRDKPVSEAPDEFLANIDTIQPTCISVPASKMDDIEQIVMTQIVAMEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00362580;
90% Identity: iTF_00362580;
80% Identity: iTF_00362580;