Ccol000463.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- wdn
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000009.1:731186-741985[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 5.6 4.3e+02 1.6 0.2 2 23 271 293 270 293 0.88 2 10 0.00067 0.051 14.0 3.2 1 23 299 321 299 321 0.98 3 10 0.00093 0.071 13.5 2.7 1 23 327 350 327 350 0.97 4 10 0.002 0.15 12.5 1.4 1 23 356 378 356 378 0.92 5 10 0.0009 0.069 13.6 0.1 2 23 387 408 386 408 0.96 6 10 6e-06 0.00046 20.4 5.2 1 23 414 436 414 436 0.97 7 10 6.2e-05 0.0047 17.2 4.7 1 23 442 464 442 464 0.94 8 10 0.00016 0.012 15.9 3.0 1 23 470 492 470 492 0.97 9 10 0.22 17 6.0 5.4 1 21 498 518 498 520 0.94 10 10 4.3e-05 0.0033 17.7 2.2 1 23 526 549 526 549 0.97
Sequence Information
- Coding Sequence
- ATGGCGTCCCAAAACAAGGCAATCGATGACTTTTGTCGTTTATGTGCAATTGAATCCCAAACCGGAGTTATTATTTATAGCGCAGAGGGTGAGAACCTATGTTTGGAAGAAAAAATAATAAATTGTTTAAGAATTGAGGTTTCTAGAGATGATATGCTACCTAAGCGAGTTTGTCATTCATGTAACCTACTGCTTGAAGATTATTACAGATTTTCAGAGAGAGCAGCTCAAGTTCAGCAAACTCTTTATTTTCTTCTTGGACTCCATTTGCCACATGCTCAAGAACAAGAACAACAATTATGTTTAATGGAAGGCAGCGTCAAAGTGGAATCAAATGTCATTAAAAAAGAATTGGATGAATTTATTATTCAACAAGGGAATGTTCAATTTGAAGGAGAAAAATTCAATTTGTTGATTGGTAGAGATGAAGGAACAATCAGGGACCAAAAACAGTTTTATGATGTACGATGTACCAGAAGGATTGAAATGAGCAGAGATGTTGAGGTTAATGAAGAGTTTTCTTTGATGAATGATTTGACAGATGATTGTGGGGAAGTCAAACAAATTCATAGAAGAAAAATGTTAGTGCCCAAGAAGACTGTACTAGATAAAAACGAGGGAGGAACAAGTCACTTGAATGAATTAGAACCAGTTGAAGTGGAACAAAATAGTAACCAAGGCTTTTTTAAATCTAATGGTTTCAATGATCAGAATTTGTTTCAAGATATAAGTGACAATGATGAAATGAGTAGTGAAGAAGATGAAGAAAACAAAAAAATGGAAGCTGAGTGGAGGAAGAATTGGGGAATTATGTGTGACCAATGTCAAAATATTTTTCCAGAACGATTGGTTTTTGAAAAGCATTATATGTTTTTACACAATAAAAAGTCTGTTTACACTTGTTCTTATTGTAAGAAAACAGTTGATAAACACTCTGCCTACAAAGTTCATATCAATCAACACATATATGATGGTAGATTTAAGTGCAGGTTTTGTGACAAAAGGTTTTTTGCTAAAGAGATGCTTCAAATTCATTTGACAACTTTTCACAGTCAAATGAAAATTTTCATCTGTGAAGAATGTGGTATGAGTTTCACATCTCAATCAAGGTTGGATTTCCATAAAAAAAAACACAAAAAACCAACTGAAGAAGAACTTCGATGCACAGAATGTGGCAAGGTTTTGCAAACTAGAGGAGGACTTGCAGCTCACAAATCAGTTCACAAACTTGGTCGTCATTTCATGTGTCACATTTGTGGTAAAACATTTACACAAAAAATAAACATGCAACAACATGTAAAACATCACAAAGGAGAAAGGCCTCATTCGTGCGATATTTGCGAGAAAAGTTTTGCCGAAAAATCTCATCTCAATCGCCACAAAAGTTTTCATACGAAAGATCGACCTTTTCAGTGTCCTGTTTGTAAAAAGATGTACAAAACTGAAAGATGCTTGAAAGTTCATTCTCAGATCCATTGGAATTCTAGACCTTACATTTGCTCATTCTGCGGAAAAGGATTTTTAAGCTCGACTAAATTAAAACAACATCATAACTGCCACACGGGAGAACGACCCTTCGCTTGCAAATATTGCGAACGAACTTTTACTAATTATCCGAATTGGTTGAAACACACTCGACGAAGGCACAAAGTAGACCATAAGACAGGACTCAGTTTGAAAGAAGAATCTCAACCTCAAACTGTCGTCGCTGTCAATCCGATACCTGAGAGTATTGAAATCCCGGAATCGGCCATAGAGTTCATCGAAATACCGGAAGTGGAAGTAAAGGAGGATGGAAGAGACAGCGTGCATTCTCAACATTCCGTTTTGAACATGATCAGTCCTTCGATTCTGGCCGGTTCTCAGTTCCAAATCGTTCAAGAAGCAGGATGCCAGTATCAAATGAACCTGATACCTAATTTGGTGTCTCCTCAAGAGGTTTTTCCAGGCCATGTAATTGTTCAACATGAAAACCGTTAA
- Protein Sequence
- MASQNKAIDDFCRLCAIESQTGVIIYSAEGENLCLEEKIINCLRIEVSRDDMLPKRVCHSCNLLLEDYYRFSERAAQVQQTLYFLLGLHLPHAQEQEQQLCLMEGSVKVESNVIKKELDEFIIQQGNVQFEGEKFNLLIGRDEGTIRDQKQFYDVRCTRRIEMSRDVEVNEEFSLMNDLTDDCGEVKQIHRRKMLVPKKTVLDKNEGGTSHLNELEPVEVEQNSNQGFFKSNGFNDQNLFQDISDNDEMSSEEDEENKKMEAEWRKNWGIMCDQCQNIFPERLVFEKHYMFLHNKKSVYTCSYCKKTVDKHSAYKVHINQHIYDGRFKCRFCDKRFFAKEMLQIHLTTFHSQMKIFICEECGMSFTSQSRLDFHKKKHKKPTEEELRCTECGKVLQTRGGLAAHKSVHKLGRHFMCHICGKTFTQKINMQQHVKHHKGERPHSCDICEKSFAEKSHLNRHKSFHTKDRPFQCPVCKKMYKTERCLKVHSQIHWNSRPYICSFCGKGFLSSTKLKQHHNCHTGERPFACKYCERTFTNYPNWLKHTRRRHKVDHKTGLSLKEESQPQTVVAVNPIPESIEIPESAIEFIEIPEVEVKEDGRDSVHSQHSVLNMISPSILAGSQFQIVQEAGCQYQMNLIPNLVSPQEVFPGHVIVQHENR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -