Ccol000054.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- -
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000009.1:6098607-6101452[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.022 1.7 9.2 10.8 1 23 332 354 332 354 0.96 2 11 0.47 36 5.0 2.6 1 23 361 390 361 390 0.86 3 11 6.2e-05 0.0048 17.2 1.8 2 23 399 421 398 421 0.95 4 11 0.0084 0.64 10.5 2.5 3 23 428 448 427 448 0.92 5 11 0.00024 0.019 15.3 0.1 1 23 454 476 454 476 0.97 6 11 2.4e-06 0.00018 21.7 0.8 1 23 482 504 482 504 0.96 7 11 0.001 0.079 13.4 0.5 1 23 510 532 510 532 0.96 8 11 1.7e-05 0.0013 19.0 5.1 1 23 539 561 539 561 0.98 9 11 0.004 0.3 11.5 6.8 1 23 567 589 567 589 0.96 10 11 0.0001 0.008 16.5 0.4 3 23 596 616 594 616 0.97 11 11 0.0017 0.13 12.7 5.3 1 23 621 646 621 646 0.95
Sequence Information
- Coding Sequence
- ATGCTTCAGCTAAATGAACTTTGTCGTTTATGCGCCCAGAAGAAAAGAAATAAACTGGATTTGTTTACAGATAATAACGAGGAACAGTCAAAAATTTTGTTGGATAAAATATCCCTTTGTTTAGCTGTTCGAGTATCAAGAGAAGATATGTTACCAAAAATGATTTGTGCTGATTGTCAAAGAAGTGTCGAACAATTCAATGCTTTCAGGGTTAAATGTCACAAGGCTGAGGAAAGACTGAACAAAATGTTATCGTTGATGGTGCCAAACAGACAACCACAACAACAGCCTGTGATAACTGGAATTAAACAAGAGTACTTGGAATCTGATTTTCATGAAAACACAAACATGAGTTTGAAGTTGGACTACCCCAAACTCAACGAACCAGTTTTTTATTCAAATTTGAAATCGGTTAAAAATGTCAAATGTGAAGTGGAAGAAATCGACAATGAGGGTAGTTGGAATCTATGCAACAACTCCACTGGCTCAGATTTGATTCAGATCATTTCTGAAGAAATAGTCGGTCAGCATTGCTCTGAAGATACAAAGCAACCACAAATTGAAGTCATTTCAGAGAACTTCAGCGAAGACTTCAAAAACATAAATTGTTATGATAATGATTATGTATGTGATGTTAAAGTCATTCCCGAAAGTCTCCTTAGAGAGGAAGAAGGTGAAATAAACTTTCAGTGCTTTCAAGAAAATTTTCAAATCCAAGAAGTTCAAGAACCAGAAATCCTTGCCAAGATCGAAGAACCAACAGGTGAGAGTGATCAAAATGCTGGTATGTTGTTAGCTGTTGAGAACACACAATGGAAATCGAGACCTGGGAGAAAGAAGTCTAAATGTGGGAAGGGTGCTAAACGTAAAAAAATGAGCAGTGATGATGAAATTGATGAGAAGTACTTGACATTAGGAGCTGGAGAAACATGTGACATTGATTTAGAGGAGATGGATGCTTTGATTAAGAAGAAACAAGATCCAAATGCAGTGTTTAAGTGTGATAAGTGCAATAAAACTTTTAAGTTTTTTAAATGTTTGAGGAAACACAAACACTGGCATGATTCACAACCTGAAATATTCGTCTGTGATTTCTGCAAAAATGAAAACCTCAAGTGCTTTGAGTTTTCTAGTTTAAAGAGTTTAAATAACCATATTCAGAGAAAACATTTATCAATGAATTTGAATAGATGTTCGTGTGATTTATGCTCTCAGATGTTTCCATCTCAAAGTCAACTGAATGCACATTACAAAAAAGTTCACGATGATTCTGGAGCTGATTGCCAAATATGTGGAAAGAAATTTAAAAATAGCACTCGTTTGAATTGTCACTTAGTAGTACATCAAGACGAGAGGCCTTATATCTGTGATCAGTGTGGACAAACATTCAAGTGGAGCAATGCATTGAAAGTTCATATTCAGTGGCATAAACAAGAGAAGAATTTCCTTTGTTCCGAATGTGGGAAGAAATTTACAGCTAAAAAGAATTTGATTGAGCATTTAAACACTCACACCGGGAAAAGGCCTTATGTGTGTGATGTCTGCAAGGCATCTTTTATCCAGTTTTCAGCTTATTCGAAACATCTCTACCTTCATAATGAGGGGAAAAGAATCCACAAGTGTGATAAATGTGACAAATCCTACAGTCATGCTTACATGTTGAAGCAACACTTGATCAGGCACACCAATCTTCGGCCACACGAATGTTCGACTTGTCACCGAACCTTCAAATCTCAATCAGATCTTTGGTGTCACGTCAAAATCCATCAGGAGAAACAGTACGGGTGTCAAGTTTGTGGGAAAAAATTCGCTCTTTCGAAAACACTTCGAGATCACATGGTTAGACACACGGGAATCAAACATAGGTGTCCAGTTCCGGGTTGTCAGAAAAGTTATACGCAGAGATTCTCACTCACGAAACATTTTTGCAAGCAACATCCTTCGCTAACTATCATTAAAAAGAAAAGTGGGAAGAAAGCTCCTTCGAGTGACAAATCAACAGAGAAAGATGGAGACAACAGCGATTTCATTCAATATGATTTCAAAGCCAAGGAGCTGGAGGAAGGATTGAACATTAATTGA
- Protein Sequence
- MLQLNELCRLCAQKKRNKLDLFTDNNEEQSKILLDKISLCLAVRVSREDMLPKMICADCQRSVEQFNAFRVKCHKAEERLNKMLSLMVPNRQPQQQPVITGIKQEYLESDFHENTNMSLKLDYPKLNEPVFYSNLKSVKNVKCEVEEIDNEGSWNLCNNSTGSDLIQIISEEIVGQHCSEDTKQPQIEVISENFSEDFKNINCYDNDYVCDVKVIPESLLREEEGEINFQCFQENFQIQEVQEPEILAKIEEPTGESDQNAGMLLAVENTQWKSRPGRKKSKCGKGAKRKKMSSDDEIDEKYLTLGAGETCDIDLEEMDALIKKKQDPNAVFKCDKCNKTFKFFKCLRKHKHWHDSQPEIFVCDFCKNENLKCFEFSSLKSLNNHIQRKHLSMNLNRCSCDLCSQMFPSQSQLNAHYKKVHDDSGADCQICGKKFKNSTRLNCHLVVHQDERPYICDQCGQTFKWSNALKVHIQWHKQEKNFLCSECGKKFTAKKNLIEHLNTHTGKRPYVCDVCKASFIQFSAYSKHLYLHNEGKRIHKCDKCDKSYSHAYMLKQHLIRHTNLRPHECSTCHRTFKSQSDLWCHVKIHQEKQYGCQVCGKKFALSKTLRDHMVRHTGIKHRCPVPGCQKSYTQRFSLTKHFCKQHPSLTIIKKKSGKKAPSSDKSTEKDGDNSDFIQYDFKAKELEEGLNIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -