Ccol013961.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- -
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000010.1:9680701-9683809[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.016 1.3 9.6 0.3 1 20 237 256 237 260 0.87 2 15 0.0012 0.09 13.2 4.2 1 23 272 295 272 295 0.96 3 15 0.0041 0.31 11.5 1.5 3 23 366 389 364 389 0.90 4 15 0.33 25 5.5 0.1 3 23 487 510 485 510 0.94 5 15 0.046 3.5 8.2 1.1 2 23 542 564 541 564 0.92 6 15 0.085 6.5 7.3 0.1 2 23 574 598 573 598 0.92 7 15 0.0011 0.088 13.2 2.0 1 23 627 650 627 650 0.97 8 15 1.8e-05 0.0014 18.9 0.4 3 23 661 682 660 682 0.92 9 15 2.5 1.9e+02 2.7 0.9 2 23 688 708 687 708 0.83 10 15 0.00064 0.049 14.0 0.6 1 23 718 740 718 740 0.95 11 15 0.00075 0.057 13.8 1.3 3 23 748 768 747 768 0.99 12 15 3.4e-06 0.00026 21.2 4.5 1 23 776 798 776 798 0.98 13 15 1.7e-05 0.0013 19.0 2.9 1 23 804 826 804 826 0.97 14 15 0.018 1.4 9.4 4.2 1 23 832 854 832 854 0.97 15 15 0.0042 0.32 11.5 2.2 1 23 860 883 860 883 0.93
Sequence Information
- Coding Sequence
- ATGGAGGACTATGAAAAGCTTTTCCCTTCAGATCCCGTCGGAGAAATTGTTATAGATTTCGGCGAGATATGTAGATTTTGTTTAACGGAAACTCAGAGCAAAATAACAATTTTAGACAAGTGTTTGAGAGAAAGTACGGAGGAATCTAACGAAGAGACGATTTGCAGTTTCGTTATGAAGTTGAGTTCTATCAAGGTTAGTTGGAAAATACAGAAAACTTTCCCCTTACTGGTCTGTGAAAATTGTTATGATTTGATAAGACTCTGCTACAACTTCAGTCAAGTCTGTCAGAGATCGGATCTCTCACTTAGAGACTGTCATGAGAGAACTTTGCAAGAAATAAAAGCACAGTTCAGCAACAATGAAAATGAGAAAGTAGTTGAGGATGATGATAAATCAAATCAAATCCTGAATGATTTGGATTGTTCTGTGAATGATGCGAACTTAAGTGACTTGCTTGATATTGAAAAAGCTCCAACGAAAAGAGATGAAGAATTTAAATGGAAGCCGACATCAGGACAGAAATCGAATGTCATCCTCAAAGCAGGGAATATTAAACAAAAATATCAGAGAATGAACTCGTTATCTGAAAGACTGAAAGAAGCTCAACTGAAATTGGCTGAAGATATACTCAGATCAAATGACATGATGCTGGGACTGCCCAAGACTGACGAACTGAATAAAGCTTTGAGTGAAGAGAAATCGTCTTATGAATGTCCTCAGTGCTCACTCAAGTTCAACAATCCGGAAGCTTTGAAGTTTCATTATGTGGCCACTCACGGACCAATCAGAAAGCTTAAGATTGTCAACAAGTTTCAGTGTAGGAAGTGTGTCAGGTGTTTTAGTGACCAAGAAAGGCTTATCAGGCACTATGAAAGCTTTCATAAAATTGATAAAGCCGAGCTTTCGGACGAAGACTTAAATCACAAGGTGAGGAAATCCGTTCGAACGGGTAAAAGAAAATTTTACTGTCTTCATTGCGTACCTTATAAAATCTATCAAAACCGCGATGAGTTGGTCGAACATTTAGAACAGTGTCACAAAGATGGTGACACGGATGAACGGAAGTCGCAAAGTGTTTCCAAGGTGTACGGTTGCGCGCACTGCTCGTCAGACACGAGTTTCTCGTCGAAGTTCGCATTGAACCGTCACCTAAGAACCGTTCATAATTTAAAAGGAGACGAAGTCACGTGGAAAGACATAAAACTAACAGCCAAGACTGAAGAGAGCCCCGGCGAAAGCTCGGATTTGAAGCTTTTTAAGGTGTTCGTCTGCACGGATTGTTCCCCGCCCGTTTCATTCACGAACGTGAACGCATGCGTTCAACACAAAGTTGATACTCACGACAGACAGTTGGAAAACATTCCGTTGAAAGAGTTGACGCCGGTTTATGTCGATTCGCCGAACGTGTTCAAACAAAGCAAGGAACAAGGGACGCCTTTCTGTCTGAAAGTCTTCTGCAAGAATTGCGACCCGCCGATGGAGTTCCCGACAGCGAGTGGTTTTGTCAGTCATATGTCCTCCTTCCACGAGAACTCAAATGTTGAGAATTGGGACATCGAAACGAAACCGGTTAACGATTTCCAGTCGAACGATTCAGGCAAGAAGGAGAGTCAGCTGTGGAAGTGTTCCGATTGTCCCGCGTCTTACTTCCGACGTCAGTCACTCTACTACCATTCGAAAGAGAAGCATAACAAGATACTCGACCTGGGAGCGATGAAATGTCCCGAACCTGACTGCACCGAGTCTTTCTTCATCAACCGTCAGCTAATTCAGCACGGGATAAGCGTTCACGAGAAATACTTCGCCAACTTCCATAAGATATTCACAAAGAAGATTCTCCAACCGTCGACGGAAGAAGAGAATCGGATCAAGAACTTCGAATGTGACATCTGCGAGAAGAGGTACGTTTGTAAGAACTCACTCAAGAGACACATTCTCAAAGCTCACCTGGGTAGAGCCGACACGGAGAAGGTCGACTGTACTTATTGCGGTAAAACTGTATCGAACAAAGTCAACCTGAAATCGCACATCGAGTTCGTTCACGAAGCTCTCTTCGTGTCCTGTCCCATCTGCAAGAAGAAAATCAATTTCAGAACGATAGGAAAGCATTACAAGACCCATCAGGCGAGTCCATCGATGGTCGATCAGTTTCTCTGTAACCTCTGCGGCAAGATCCTGAAATCGAAAAGAGGTTTCGAGGACCATCAGAAGGTTCACAGAAACGTTCGAGATCAACTCTGCGACATATGCGGAAGCGGGTTCACCACGAAGAAGTTCCTCAACCTTCACAAGAAAACGCACGAAGGGAGTCAGAGGAAGGTGTTCGAGTGTCATCAGTGCGATAAGGTGTTCAGTGGACGACACACTCTCAACAGGCACCTCCTCACGCATTCCGGCGAGAAGAATTTCATCTGCGAGATATGCAGCAAGTGTTTCTACACCCTGCAGGAGTTGAACCGTCACGTGAGGTATCACAAAAAGGAATACAGGTTCGATTGCCAGCTATGCGACATGAGGTTTTTAGACAAATCCAGGTTCAGGCATCACATGATGAGGCATCGAAACATCAGACCGCATAAGTGTTCGTTCTGCGATAAGATGTTCATAGTCAGACGGAAGATGAATTTGCACATGGCCGCGAAGCATAACGTCCAAGTTAAGAACACGAAAGCTGTTTGGAAGGATCCCAAGACGTACATTCCTCTGGATGATTTGCTGTAG
- Protein Sequence
- MEDYEKLFPSDPVGEIVIDFGEICRFCLTETQSKITILDKCLRESTEESNEETICSFVMKLSSIKVSWKIQKTFPLLVCENCYDLIRLCYNFSQVCQRSDLSLRDCHERTLQEIKAQFSNNENEKVVEDDDKSNQILNDLDCSVNDANLSDLLDIEKAPTKRDEEFKWKPTSGQKSNVILKAGNIKQKYQRMNSLSERLKEAQLKLAEDILRSNDMMLGLPKTDELNKALSEEKSSYECPQCSLKFNNPEALKFHYVATHGPIRKLKIVNKFQCRKCVRCFSDQERLIRHYESFHKIDKAELSDEDLNHKVRKSVRTGKRKFYCLHCVPYKIYQNRDELVEHLEQCHKDGDTDERKSQSVSKVYGCAHCSSDTSFSSKFALNRHLRTVHNLKGDEVTWKDIKLTAKTEESPGESSDLKLFKVFVCTDCSPPVSFTNVNACVQHKVDTHDRQLENIPLKELTPVYVDSPNVFKQSKEQGTPFCLKVFCKNCDPPMEFPTASGFVSHMSSFHENSNVENWDIETKPVNDFQSNDSGKKESQLWKCSDCPASYFRRQSLYYHSKEKHNKILDLGAMKCPEPDCTESFFINRQLIQHGISVHEKYFANFHKIFTKKILQPSTEEENRIKNFECDICEKRYVCKNSLKRHILKAHLGRADTEKVDCTYCGKTVSNKVNLKSHIEFVHEALFVSCPICKKKINFRTIGKHYKTHQASPSMVDQFLCNLCGKILKSKRGFEDHQKVHRNVRDQLCDICGSGFTTKKFLNLHKKTHEGSQRKVFECHQCDKVFSGRHTLNRHLLTHSGEKNFICEICSKCFYTLQELNRHVRYHKKEYRFDCQLCDMRFLDKSRFRHHMMRHRNIRPHKCSFCDKMFIVRRKMNLHMAAKHNVQVKNTKAVWKDPKTYIPLDDLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -