Ccol002145.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- prdm10
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000007.1:395537-413749[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.6e-05 0.0066 16.8 1.0 2 23 564 585 563 585 0.96 2 13 8.6 6.6e+02 1.0 0.5 12 23 632 644 631 644 0.85 3 13 0.001 0.077 13.4 1.4 3 23 686 706 685 706 0.98 4 13 0.00011 0.0083 16.5 0.3 2 23 740 761 739 761 0.97 5 13 3.8e-05 0.0029 17.9 0.6 1 23 777 799 777 799 0.99 6 13 0.22 17 6.1 3.5 1 23 807 829 807 829 0.98 7 13 0.0003 0.023 15.0 0.3 1 23 835 857 835 857 0.98 8 13 0.0015 0.12 12.8 1.3 1 23 863 886 863 886 0.95 9 13 0.018 1.4 9.4 3.3 1 23 891 913 891 913 0.95 10 13 5.4e-06 0.00042 20.5 2.1 1 23 919 942 919 942 0.94 11 13 0.011 0.85 10.1 0.5 1 23 979 1002 979 1002 0.97 12 13 0.00042 0.032 14.6 2.4 1 23 1024 1047 1024 1047 0.96 13 13 0.0022 0.17 12.3 6.0 1 23 1085 1108 1085 1108 0.97
Sequence Information
- Coding Sequence
- ATGGAGGAATCTCCTGTAGTTCAGGAATGTCCTCCATCTGTTCTTCCATTACAGTGTGTCCTTAAGGAAGATGATTCCTCTAATGCACAATGGCAAAATTTTGCTGAGAAAGCATCAAACATCCAAAATTCAAGACTCTTGTTTTTAACAGTTGAATATGTTCATGATATCAGTAATAATGATGTAGAATTTAATAATTATGCTTCAAACTTGTCAGACCATGAAGAGGTTCTTTCAATTAATTCTACTGTGAATCCTTCTGAAAAATATTCCCCCGGATATAAGTCTTTAATAAATGAAGGACAATCACAAATTCAAAATTCTGTTGTTGTTTTACCTTCAAGGAGTAATTCTCAGCAGATTAACATCATTGTTGATGAATCACAGACTCCTAAGGAATTGGTCATTGAAGGTCAAAAATATTCTCAAGATCATGAGAACTTGGAGAATTTGAAATTAATGCCTGAAGTTACTGAACTTATTGTTAGTTCTCATTCAAGTTTTGCTGCACAAGTTAATTCTGATGATAATTCACAAGAGCTTAGTCAGGAATTAATAATCACTACAACTCCAAGAGCTGTTTTATCAGAAAGCACCACAATTGAATCTGCTGAATCAAACTCAGGCCTACTTGTAGCAAGCAGTTCCACTGATTCTTTTTTTCAAGGAGGAAGGGAAAAAGTCGTCGCAGCAGTTGATTTGGTCTCGTCTTGCAACGATTCGGTTCAAAGCGATTTTTCATCGCCACCATCTGATGAAGAAGTTCTTTTGAATCCAGCAGAGGAAATTGAAAATAAGCCTCTATTACATCCTCTCGAATACGCTATTGATGGCTCAAGTTTAAAGGAAGATGAATTGCTGCTTTCCGATTCAGACCAGAATAACGAACTCTTGATGAAATCTGAAGGACTGATGGATTCTTACAATTTGGCACAAGGAACGTATACATCAGATGGTAATTCGTATCCTACAATGGAAGAACAATTAAACATAAGCAATATGGAAAAAGGAGATAGCGAATATTTGTTGCCAGATGCCATGGTCTTCGCAGATACAGACTCCGGCTTACTTCAGTCAAATTTGGAAGTTTTTACATCCCACGTTTTAGATACCAATGGATTGCTTTTATACGACAAGTCCAGACTTAGGCAGAGTAAAAAACATCCTGCAGAACATCTTGGCCTTGATAATTGGTGTGAAGACTGCGAATTTGGCATGAAATGTGGTCGACACGAAGTTAAGATTATTTCAGATAAACCCGTGTTACCGAGAGCCAGAGCTACACTTCCTAAAGAACTATTGGCAATTAACAAGTTGCCGGGAGACAAAAGTGTTTTCGCTCGAAAAACTATCATGAGACGAGTACAATTTGGTCCTGTTGAAGGAAAGTTACGTAAAATTTGGGAAGATTCCAAAGAAGACGATTCTAATGCCGTCAAATTTCTGTTGGAGGTAGAAACCGGTCATTTATTAAAAGTGGATGTTTCGGATGAAAATGAATCGAATTGGATGCGCTTTGTTCGTAAAGCAAGAAATTTAAAAGAACAGAATTTGATACTGACTCAACAAGGAAAGTCCTTATACTTTACGACAACTCGAGTGATACCACCAAGACACGAACTTAAGGTTGGATACAGTCCTCAGTATGCAAAAAGACGGAAACTTGTCGTTTTAGAAGAGCTCTCATGGAATTGTTTTGAATGCACAACAAGATTCTCATCTTCTAACGAATTGCAGAAGCATTTGAATATCCATGAAAACGAAAAGAATAAACTGTGTAAATTAATTTTCGTATTACTGCTTTTAGGATTTGAACTTGAAGTCAGCCAAAAAAAAGGAGAGAAAGTTGTCTTTGAAAGGGCTGTCCAATATGGCAAGACGAAGAGGGAGTCGAAATCATATAGTTTAAAAAGGCATTTGATGTTAGTTCATTCGGAAAAAGATAAAGAAAACTCAGAAATTGTAAAAACTGTTAAAGACAAAAACGAAAAAATATCAGTGGTCAATACCCTGTTTAAGAAGAAGCAATCAAACGGGAGTGGGAGCGAATGGCTTTGCACGCATTGCAATCTTACCTTTGACAATCCTTCTGTTCTTAATTTGCATACATTGACCCACGCGGCTGAAGACTTGGAATCCGAAGCCGTTTTAGGTCTTCCCTCTGATCTGTCGTCTGTTTACCACGAAGGTGAATTTTTGGTAGAAAACGGTGATGTTCAGTGTCCACAGTGCACTCAAGAGTTTTCTAGTAAACGAGAACTAATCGACCATGTGTCTACTCACGGTAAAATGACACGTAAGAAGTCTTGCTCCAATTCGTCAAAACCTTATAAGTGCGATCAGTGTTACAAATCTTTTGCCACTGATGCGAGATTGGAGAAACATATGTTGGTTCACGGTTCAGAGGAAAGTAAACCGTACCAATGTGACACCTGTTTGAAGCGTTTTTTAAATAATTCTGCTCTGTCTTGTCATCTCAAAACCCATAATGGTAAAAAGTGTTTCGAATGTCCATTGTGTAAAAAAGAATTTGAACAAGTTTTTGGGCTCAAAGAGCATGTTAAAAGTCATTCGGTGGATGGACTTTTCACTTGCCCGCATTGCAACAAGGTATTTGATGGGTATAGTATTGTTCGGAAACACATAAGAGCATTTCATAGTGGACATCAACACATCTGTAAAGACTGCGGGAAATTATGTCCGACTCTGGATAAACTTCGGATGCATTCTTTAAAGCATTCGGATCACCGCGAGTTCTTGTGCGCCAATTGTGGGAAACAATTTAAACGTAAAGATAAATTAAAGGAACATATGAAAAGAATGCATTCAGTTGAGCGCGAAATGAAATTAATGTCTTTGGCTCTAAAAATTCCAAATGCTAAAGAAAGAAGGTTTACCCCCAAAATGTCTCCATTAGCATACGATAGATTTATATATAAATGCAGGGATTGTATGGTCGGCTTTAAGCGAAGGGGAATGCTTGTAAATCATTTGGCTAAGAGACATCCGGAAATAATTCCAGATACCGTGCCTGAACTAAACCTACCAATTTTAAAGACCACGAGGGATTATTTTTGTCAATATTGTGATAAGATTTATAAAAGTAGTTCAAAGAGAAAAGCACATATTTTGAAAAACCATCCGGGAGCGCAACTTCCATTGAGTAACAGGCAAAAGGGCGGAGTCCCTCACATACCAGGCTTACCTAATCCTACTTTTTCACAGACTGTGGGGAGTATAAAAACAACTCCTCACTCATGCAAATGGTGCCATAAGCAATATGCGTCAAAAGCTAAATTATTGCAACATCAAAGAAAAAAACACATTTTATTGTTACCTAAGTCACAGCAGACTCCAAGACTGTCAAAAGTCCCGAGTTCTCCCGTTGGTACCAAATTAATGGAGAATCCTGGTAGTCCTCTTCAGGTTGCGGATTGGAAGGGAAATGAAAAGTGCTTTATTGGAACCTATTGCACCAAAATAGAAGAAAATGACGTGCAGATTACACAAGGTACTTTCAATGTCAATAGTGAATTCAGTCAAGATTTGGATGCATACAAGAAGAGCACGAAGGTGTTGCCAGAAAGTATACCTTCAGAATTGTTGCAACAGGCGATGACTGAATTAAGTCAAACCTTATCGGAATACAAATTGCCTTTTACTGGCACCCAAGATAATTTGATGAAAATCATTGGCATAAAAACTGGTGGTGAGATCATCACTCGTGAGGATAACAACATGCCAGCTGTTCAAATGAGTCGAATGTGGCCGGATCTTCCACCTTATCCTCCTCGCTGA
- Protein Sequence
- MEESPVVQECPPSVLPLQCVLKEDDSSNAQWQNFAEKASNIQNSRLLFLTVEYVHDISNNDVEFNNYASNLSDHEEVLSINSTVNPSEKYSPGYKSLINEGQSQIQNSVVVLPSRSNSQQINIIVDESQTPKELVIEGQKYSQDHENLENLKLMPEVTELIVSSHSSFAAQVNSDDNSQELSQELIITTTPRAVLSESTTIESAESNSGLLVASSSTDSFFQGGREKVVAAVDLVSSCNDSVQSDFSSPPSDEEVLLNPAEEIENKPLLHPLEYAIDGSSLKEDELLLSDSDQNNELLMKSEGLMDSYNLAQGTYTSDGNSYPTMEEQLNISNMEKGDSEYLLPDAMVFADTDSGLLQSNLEVFTSHVLDTNGLLLYDKSRLRQSKKHPAEHLGLDNWCEDCEFGMKCGRHEVKIISDKPVLPRARATLPKELLAINKLPGDKSVFARKTIMRRVQFGPVEGKLRKIWEDSKEDDSNAVKFLLEVETGHLLKVDVSDENESNWMRFVRKARNLKEQNLILTQQGKSLYFTTTRVIPPRHELKVGYSPQYAKRRKLVVLEELSWNCFECTTRFSSSNELQKHLNIHENEKNKLCKLIFVLLLLGFELEVSQKKGEKVVFERAVQYGKTKRESKSYSLKRHLMLVHSEKDKENSEIVKTVKDKNEKISVVNTLFKKKQSNGSGSEWLCTHCNLTFDNPSVLNLHTLTHAAEDLESEAVLGLPSDLSSVYHEGEFLVENGDVQCPQCTQEFSSKRELIDHVSTHGKMTRKKSCSNSSKPYKCDQCYKSFATDARLEKHMLVHGSEESKPYQCDTCLKRFLNNSALSCHLKTHNGKKCFECPLCKKEFEQVFGLKEHVKSHSVDGLFTCPHCNKVFDGYSIVRKHIRAFHSGHQHICKDCGKLCPTLDKLRMHSLKHSDHREFLCANCGKQFKRKDKLKEHMKRMHSVEREMKLMSLALKIPNAKERRFTPKMSPLAYDRFIYKCRDCMVGFKRRGMLVNHLAKRHPEIIPDTVPELNLPILKTTRDYFCQYCDKIYKSSSKRKAHILKNHPGAQLPLSNRQKGGVPHIPGLPNPTFSQTVGSIKTTPHSCKWCHKQYASKAKLLQHQRKKHILLLPKSQQTPRLSKVPSSPVGTKLMENPGSPLQVADWKGNEKCFIGTYCTKIEENDVQITQGTFNVNSEFSQDLDAYKKSTKVLPESIPSELLQQAMTELSQTLSEYKLPFTGTQDNLMKIIGIKTGGEIITREDNNMPAVQMSRMWPDLPPYPPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -