Ccol013840.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- -
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000010.1:6962468-6965905[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.011 0.87 10.1 0.4 1 23 237 260 237 260 0.96 2 18 0.012 0.91 10.0 1.0 1 23 271 293 271 293 0.98 3 18 6.9 5.3e+02 1.3 0.0 2 9 342 349 341 361 0.74 4 18 1.5 1.2e+02 3.4 1.6 1 23 377 400 377 400 0.76 5 18 6.7 5.1e+02 1.4 0.8 3 23 456 477 455 477 0.91 6 18 0.011 0.88 10.1 3.3 1 20 578 597 578 600 0.94 7 18 0.0039 0.3 11.5 1.1 1 23 604 626 604 626 0.98 8 18 6.8e-05 0.0052 17.1 0.8 2 23 638 659 638 659 0.97 9 18 4.8e-07 3.7e-05 23.8 1.4 2 23 675 696 674 696 0.96 10 18 0.0007 0.053 13.9 0.6 2 23 706 727 705 727 0.93 11 18 0.0026 0.2 12.1 0.0 1 23 733 755 733 755 0.97 12 18 0.12 9.4 6.8 1.8 1 21 762 782 762 786 0.91 13 18 0.0042 0.32 11.5 3.7 1 23 793 815 793 815 0.98 14 18 0.0029 0.22 12.0 0.2 2 23 822 843 822 843 0.96 15 18 0.0044 0.34 11.4 3.7 3 23 851 871 850 871 0.99 16 18 0.00019 0.014 15.7 2.2 1 23 877 901 877 901 0.96 17 18 0.00016 0.012 15.9 3.8 3 23 909 929 907 929 0.98 18 18 0.0025 0.19 12.1 4.8 1 23 935 958 935 958 0.96
Sequence Information
- Coding Sequence
- ATGAATGATAATAGCGAGACCATATTATCGACCAGTGATTTTGGTGATATTTGCCGGATTTGCTTACAACATGAGCAAAATATGGTAGATATATTCGAATCTGGAATAGTTGATCAAGTAATAGATGTCACAAATTTGAAGGTTAGTTCGGGTGACAAACTTCCAAAAACACTATGCTTAAACTGTAGCATCCAAGTGGATTGCCTGTTCAAGTTTCAGCAACAGGCAAAGACTTCTGATACCTACCTCAGATCACTATTAGAAAATAAAAAATGTGATGAAGTGGATATTGATCTAAAAGTATCACCAAATCAGGGACAGTTAAAAAAGAAAAGACAGACAGTGAGGAAAAAAAATAATAGCAAAAGTTTGGAAAAGGATCAAATGTATTTGATAGTCGTGCCAGAAGTCAATAATAGTGATCCGAAAGAAAACAGTGAAATATTTATAAAAGGTATAAACTGTGATAGTGACAATGTAGAACTTTCCCAACTTTGTAAGAATTTATTTAGAAATGATTGTTCCGATCATACATACCAAAAACACCCCATCTATCAGCATTCTGAAAAAGATTTTAATGCAACTGAAACTCAGTCTATGGAAGAAGAAAGTCAGCACGAGTCAGGAAGTGTGAGTCCTTTAAGAATTGAATCTGTGTATAATGACAGTTTTAAAGAAAATAAAGTGTTTGATGTAAATGTAGTTATTTTCAAATGTGATATGTGTAAAGAGAGCTATGAAGAAATTACAGATCTGAGTAATCACTATTTAGTCAGACATGGTAAAGAGCCACTAATTTCAGACTGCAGTTATAAGTGTCCTGTATGCTCTTATAATGAAACTGACAAGGAAGAATTTTTCAGACATTTACAAAATCATAAAAGTGAAGGTTTTCTATTTCATAAAGTTAATATTAACGGGGAGAAGATACCTCTAAAAGAGAATGATGGATATGTATTTGTTGATCCCAGTCTAGAAGTGAATACAGTTTGTAAAATATTTAAAGTCAATCTAGAAATGCTTAAATGTACAGTTTGTGATAAACTAATAGCATCAAGAAGTGTGGCTGCAGATCATTTAAAAGAATGCACTTCTGTTGAAGAGGTTAAATCAAAGCTTTACATAAAACATACATGTCCTGTGTGTCAACTTTCCTTTTTAAATGAGGAAGACAAATACATTCATCATTTGATGTCTCACAAGGAAGAAAATGTTTTTTACATCAAAGTCGATAATACATGGCAACCTGTAGAAGTGGCACTTGACGATCAACTCTTTATTCCTCATGCTGAAGCTGTGGAAATTGATAAAACCCTATCTTCAAATATTTTAGTGAAAACTTTTCATGTGTTCGATGTCAATTCCTGCAGTAGTTGTGATTTCGTAGCTGAATCATATGATTTACTCTATAAGCATTGTCGAGTTGTTCATGAAGAAGAGTTGAAAGAGCCTTCAATGGTTTGTCCAGTGTGTGTAGAAGAGTTTAATATTGGCAGTGTCGTTGAATGTAAAGCCAAATATTATGAACATTTGATGACTCATAAAAGTGAAGGTGTAGTTTTTGTCGAAATGAAAAATAATGGTTCAGTGTCAAACCTCAATCCGGCTTATTCAGATCTGTTTACACAATCATCAATTTTGTCTGGTCTAGCTAGTGGCAGTTTATCAGTTTGTTTTCCTAAAGTTTGGCATCCAGAGTTAATTATATATCATAAGAAAACAAAGAAGCCATACAAATGTGACATATGTAAAGAACGATTTAGCCACAAACTAGACATAGTTAAGCATATTGAATGTCACGAAACAAAATACATGTGTGAAAGATGCGGTAAAACCATTTCTGGGAGTAAAAAGTATACAAACCATACACTGATGCACTTAAATAGTTCAAAGAAGTTGGGAAGGAAGCCCACGTGTTCTGTATGCAACAAAAGGTTCGCGAACAGAGCATCGCTTAATGGTCACTTAAAATACCATGTCAGCGAAGGCATTAAAGGGGATGGAGGTTCTTTGTTTGGAACTATGTGTGAGAAATGTGGAAAAAGTTTTCCCAATAATTCAAGCCTGACAAAGCACAAGAAGATACATGCTACAGACAAGGAGAATGCTCTTTTAAAATGCGAAATATGTGACAAAGACTTTTCCAGACAACTAGCCTTCGATAGACATAAATCTGCTCATTTAAATCCAAAATATTTTGAATGTGGGATCTGCCGAATTCCCTTATCCTCATCCGCAAGTCTCGAAAAACATTTGGAACAGCATAAGAGTGACAGTAAAACTTACGATTGTAAAAGTTGCAAAGTTAGCTTTCTCTCAAAGGAATCGCTGAGAGCCCATCAAACTCACACCGGTCACTATATAGACCGACAACCTTTTGAATGTAATGTTTGCCACGAGAAATTTTTTCTTAGTAGAAAATTCGCCCAACACATAAAAACTCATCCCAAATATAAAATGGCGGAATGCACCCTGTGTGGAAAGCGTTTAGCAACGGTTCAATCACTCACATTACATATGGGACGTCATTTCGAAGCGAACTCCATTTTGTGTCCCCACTGCGGTAAACAGTATTTCGAAGAGAGGAACTATCACCGACACTTGTTGACCCACAAAGGTGTCAAACAATTCTCCTGCGACGTGGAAAACTGCGGGAAATCGTTTTATACCTTCTTCGAGTTGAACAGACATAAGAAATACCACCTGAACAAAAGGGATTTCGGGTGTTCGTATTGCTCGAAAACCTTTCACGAAGCTAATCATTTGACCGTACACATTCGAACTCATACTGGAGAACGTCCTTATACGTGTCCACATTGCAACAAAGGTTTTGTGACTAGATCTCGATGCAAACAGCACATAAAATTAATTCACCAAGGTATTGGCTATGATATGATTCAGAGTTCCATCTCCAAGAAGGTAACTGTTTTTGAAAACGAACACAAAACTCAGACTATTGGAACGGATATTGATTAG
- Protein Sequence
- MNDNSETILSTSDFGDICRICLQHEQNMVDIFESGIVDQVIDVTNLKVSSGDKLPKTLCLNCSIQVDCLFKFQQQAKTSDTYLRSLLENKKCDEVDIDLKVSPNQGQLKKKRQTVRKKNNSKSLEKDQMYLIVVPEVNNSDPKENSEIFIKGINCDSDNVELSQLCKNLFRNDCSDHTYQKHPIYQHSEKDFNATETQSMEEESQHESGSVSPLRIESVYNDSFKENKVFDVNVVIFKCDMCKESYEEITDLSNHYLVRHGKEPLISDCSYKCPVCSYNETDKEEFFRHLQNHKSEGFLFHKVNINGEKIPLKENDGYVFVDPSLEVNTVCKIFKVNLEMLKCTVCDKLIASRSVAADHLKECTSVEEVKSKLYIKHTCPVCQLSFLNEEDKYIHHLMSHKEENVFYIKVDNTWQPVEVALDDQLFIPHAEAVEIDKTLSSNILVKTFHVFDVNSCSSCDFVAESYDLLYKHCRVVHEEELKEPSMVCPVCVEEFNIGSVVECKAKYYEHLMTHKSEGVVFVEMKNNGSVSNLNPAYSDLFTQSSILSGLASGSLSVCFPKVWHPELIIYHKKTKKPYKCDICKERFSHKLDIVKHIECHETKYMCERCGKTISGSKKYTNHTLMHLNSSKKLGRKPTCSVCNKRFANRASLNGHLKYHVSEGIKGDGGSLFGTMCEKCGKSFPNNSSLTKHKKIHATDKENALLKCEICDKDFSRQLAFDRHKSAHLNPKYFECGICRIPLSSSASLEKHLEQHKSDSKTYDCKSCKVSFLSKESLRAHQTHTGHYIDRQPFECNVCHEKFFLSRKFAQHIKTHPKYKMAECTLCGKRLATVQSLTLHMGRHFEANSILCPHCGKQYFEERNYHRHLLTHKGVKQFSCDVENCGKSFYTFFELNRHKKYHLNKRDFGCSYCSKTFHEANHLTVHIRTHTGERPYTCPHCNKGFVTRSRCKQHIKLIHQGIGYDMIQSSISKKVTVFENEHKTQTIGTDID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -