Basic Information

Insect: Columbicola columbae
Gene Symbol: -
Assembly: GCA_016920875.1
Location: JADMLL010000002.1:16783516-16787979[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 0.017 1.3 9.5 1.2 1 20 142 161 142 163 0.94

2 25 0.0053 0.41 11.1 3.5 1 19 167 185 167 187 0.97

3 25 0.0019 0.14 12.6 0.6 1 20 222 241 222 243 0.95

4 25 5.1e-05 0.0039 17.5 2.0 1 23 252 274 252 274 0.99

5 25 0.097 7.4 7.2 2.7 2 23 290 311 290 311 0.95

6 25 0.00013 0.01 16.1 1.0 1 20 316 335 316 337 0.94

7 25 0.00019 0.015 15.7 1.4 2 23 346 367 345 367 0.97

8 25 1.4 1e+02 3.6 0.8 2 20 371 389 370 391 0.92

9 25 0.00085 0.065 13.6 0.8 1 23 401 424 401 425 0.95

10 25 0.83 63 4.2 0.3 1 19 429 447 429 450 0.84

11 25 1.4e-06 0.00011 22.4 1.2 2 23 460 481 459 481 0.97

12 25 0.11 8.2 7.0 4.9 1 21 486 506 486 507 0.95

13 25 0.26 20 5.8 0.1 2 23 526 548 525 548 0.94

14 25 8.7e-06 0.00066 19.9 1.4 1 23 581 603 581 603 0.98

15 25 4 3.1e+02 2.1 1.3 1 10 608 617 608 629 0.85

16 25 4.9 3.7e+02 1.8 1.5 2 23 815 837 814 837 0.93

17 25 0.0056 0.43 11.0 0.8 1 23 843 865 843 865 0.98

18 25 0.015 1.2 9.7 1.3 1 19 872 890 872 893 0.93

19 25 0.0034 0.26 11.7 2.9 3 21 918 936 917 937 0.93

20 25 0.37 28 5.3 0.7 1 23 1031 1054 1031 1054 0.87

21 25 0.01 0.78 10.2 0.7 1 23 1086 1108 1086 1108 0.88

22 25 0.27 21 5.8 1.0 1 20 1113 1132 1113 1133 0.92

23 25 8.2e-06 0.00063 20.0 0.4 2 23 1147 1168 1146 1168 0.96

24 25 0.00057 0.043 14.2 0.6 3 23 1182 1202 1180 1202 0.97

25 25 0.032 2.5 8.7 3.1 1 23 1208 1230 1208 1230 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	0.017	1.3	9.5	1.2	1	20	142	161	142	163	0.94
2	25	0.0053	0.41	11.1	3.5	1	19	167	185	167	187	0.97
3	25	0.0019	0.14	12.6	0.6	1	20	222	241	222	243	0.95
4	25	5.1e-05	0.0039	17.5	2.0	1	23	252	274	252	274	0.99
5	25	0.097	7.4	7.2	2.7	2	23	290	311	290	311	0.95
6	25	0.00013	0.01	16.1	1.0	1	20	316	335	316	337	0.94
7	25	0.00019	0.015	15.7	1.4	2	23	346	367	345	367	0.97
8	25	1.4	1e+02	3.6	0.8	2	20	371	389	370	391	0.92
9	25	0.00085	0.065	13.6	0.8	1	23	401	424	401	425	0.95
10	25	0.83	63	4.2	0.3	1	19	429	447	429	450	0.84
11	25	1.4e-06	0.00011	22.4	1.2	2	23	460	481	459	481	0.97
12	25	0.11	8.2	7.0	4.9	1	21	486	506	486	507	0.95
13	25	0.26	20	5.8	0.1	2	23	526	548	525	548	0.94
14	25	8.7e-06	0.00066	19.9	1.4	1	23	581	603	581	603	0.98
15	25	4	3.1e+02	2.1	1.3	1	10	608	617	608	629	0.85
16	25	4.9	3.7e+02	1.8	1.5	2	23	815	837	814	837	0.93
17	25	0.0056	0.43	11.0	0.8	1	23	843	865	843	865	0.98
18	25	0.015	1.2	9.7	1.3	1	19	872	890	872	893	0.93
19	25	0.0034	0.26	11.7	2.9	3	21	918	936	917	937	0.93
20	25	0.37	28	5.3	0.7	1	23	1031	1054	1031	1054	0.87
21	25	0.01	0.78	10.2	0.7	1	23	1086	1108	1086	1108	0.88
22	25	0.27	21	5.8	1.0	1	20	1113	1132	1113	1133	0.92
23	25	8.2e-06	0.00063	20.0	0.4	2	23	1147	1168	1146	1168	0.96
24	25	0.00057	0.043	14.2	0.6	3	23	1182	1202	1180	1202	0.97
25	25	0.032	2.5	8.7	3.1	1	23	1208	1230	1208	1230	0.97

Sequence Information

Coding Sequence: ATGAGCATTCAAACTAATCAACCTGATGGAAGTATAAATGAAGAAAATGAAATCAATTTAGACGAAAGTTCAAAATCAAATGGGTTTATTTACATGGACATGAGTGTTTATAATGAAGACGAAGAAATTTTAGATGATTGTGAAATAAAAGAAGAGGAAAGCACAAGAGAGGAGGATGAAGTCAATGATCATGGTCTGCCTTTAATATCTGTAAATAATTTATCTGATGACTCTGATATGTCTGACAATAATCGAAAACAAAGAAGGAAAATGACTAGGTGTAAATCTAATTCATTTCAAAAGGAGAATCTCTTAGAAGAGGTGAATACTGGACAAAAAAGGTACAGGTTAAGAAGTAGAACAGACTCATCAAAGGTGAGGAATCGAATGTCTCCATCAGATACAAAAAAATCGAAAAGGCTTCATACTTGCACCAAGTGTAATGAGACATTTTTAAATAAAACAGATCTTATAAATCACAGGGGTAAAAAAATCAATTTTAAATGTTCCGGGTGTAAAACAAGTTTTTGTTCAGAAGATTTGCTCCACAAACACAGTATACAATGTAAAAATAAGTCAGGTAGTGATTTGAAGATGGGTAAAACATATATCAAAGACAAGAACCATTTTGAAAACAACATAGTAATGGATGATGAAGTTAGTTTCAAATGTGAAAAGTGCAGTCGACTTTTCAGTGACAAAACGAAACTTGAATCTCATGTAATTCAAAATCAGTGCAAAAGTATAAACATATATACATGTGACTTCTGTCAGGAAACATTCACACGCATGATCACGTTAAGGAAACACATAACTACTCATTTAGACAATCAGTTCAATGGTCAGAAGGACTCTAGGAAAACAAATTCATGTCATGTTTGTAATAAAAAATTTCTCCACGCTGGAAGATTGAAAATCCACCTTCTTGCTCACCAGGGTCTCGTCTATAAATGCAACAAATGCAGGAAATCATTTTCTTCGCAGGAATCGCTAGATGATCACACGGACAATGTGAATTGTTCGTTGTTCCTACAAGAATGTTCGAAGTGCGGTAGGGGCTACAGGGACGGTTCCAAATTTCGTAAGCATTTACAAACACACAAAGACAACAAATGTCGAAGTTGTAAAAAAGTTTTCTTAGACTCTTTTAAATTGACGGAACACGTGTCTAACGGGTCTTGTTCCGGTCCCCAAAAAAATTTCGAATGCGACACCTGCGGACGGAAATACGCCAAACTAGTCAAACTAAAGATTCACATTCTGAACATTCACCACGGGATCAAATACGAGTGCGAGAAATGTTTTTTGAAATTTCCCAGTCAGGAAGAGGCGGACGAACACGTGTTTAAAGGTAAATGCAAGCCGGAGGATCCGTCCACGTGCAAAATATGCGGTAAAGTCTTCGCGAAGAGGGATTACCTCAAGAAGCATCAATACATGCACACGAATGTTCTCTTCAAATGCAAATACTGTTACTGCGCGTTCATGAAAGAAAAAAGTTACAACAAACACATGGAAAAAATGAACTGTTCGAAAAGCGCTAGAAAAATCAAAATGGCCGAATTCAATTTCAAAAAATGTCGGCTGTGCGAAATCGAATACGAGGACGAAGAAACGTTGATCGCTCATTTTCGTGCGACGCATCCGGGTCAGGAGCCCCATCAGTGTTTCTGTTGCGAATCCTGTCTTCCGACTTTCCGAGATCTTCAAAATCACATCCACCATCACAACATTCAGAAATACACGTGCAATTTGTGTGGGAAACCGTATACGAGTCAAGAAGGTTTCCGTAAACATCGTCTAAAGCACAAGGGAGCCGAGTTTAAGTGTCGTTATTGCGATACCGAATTTTTAAACGAGAGTAGATTTAAGTTCCACGAGAAAACGTGCAAGAAAAATCCGGAATCGGGTTACGAACCATCTCAAGTGGTGGAAAAGACGAAGAAGAAAGACGAGAGACCGAAACAGAGTAGACAACTTCATTGGGAAAGTCGGATTATAATGAAACGTCTGAGAGGAGATCCCAAATCGTCGACGGACACTCCCACTGGAAGTGGACAAGAGAATTCGTTAGTTTCCACCTTTTTCGACGAACCGGAAACGGATTCGTTAAACGAAAGAGGTTGGTTTGATAATTATTATAGAACGGAGGAAGATGATCTGGCGTTCGGGTTGAAAAAGGATAACGATCAGCAAGACTGCGATTCCGATTTGGACGTGAGCGAGTTCCTTCAAACGAATTCGATGACTAAGAAAAAGAAAACAAATTCGCCGACAGGATTGGAGGGAACGGATCCGACTACCACACCTGATCACGATAGCGAAAGACAGGAAGACGGTGTGGACCACTCGCCAGAAAGCTCGTCGACGGAATCCACTAGCGACTCGAGTGAGGAAGAAAGCATCGAAGAAGTAGATCTCCCAATAGACTACAACCCGAAGAAATGTCGTCTCTGCATCATTACGTTCGGTCAGGAGTACGAACTCCTTCATCATTTCATAAAATCACATCCGGGTGAGTACGCTCACAAATGTCCCAACTGCGACGTTCAGAGTCCTCTGTTCGCACAGCTGAAGGAACACATGAAAACTCACGGAATCGGTATGGGGATTTTCAACTGCGATAACTGTTCGAAAAAGTTCAAAAGCGAGAAGAAAATGAAAGCTCACAACATTCGGTGTAAGGGAATGAACATCGAAGCGGCAGCTTCCGGCGATAGGAAGTCGCTATCCTCTTCCGTCGAGGAGATTTGTAAGAAATGCGGTAAAAAGTTCCACACCAAATTTGGCTACAAAAGACATAAACAGATATGCAAGGGGAAGAAAGTTAAAAGCAAAAATTTTGAAAAGATTAATACGAAACCAAAAGAGGAACCGGAAATTGAGGATCTTCACGATGGTAATGATTTCCAGGTGTCTGATCAAGAGGAAGATGTTCCTAAATCAAGCAATAACAAACCTATCACTAAAGAGAAAGATCCGATATTGAATGGCAATACAAAATTAGCGAAAGATGATGTGAGGAAACCGGAAGAGAAGAAGAAACCGGAAATTAAAGACTCATATACAGGGGAACCACCTTTGGATAGTTTCCCTTGCAGGCTCTGTGATAAAAAGTTTCAGTACGAACGAGGCATCGTCATGCATTTCAAATCGGCTCATCCGGGCAACAAACCTCTCATATGTCATGTGTGCAACATGCACCTGGCGGACAAGTTGAAGGAACACCTAAAGACTCACGGGATTGGGGAAGAATTCATATGCGAGCTGTGCGGGAAGAGATTCAATCAGAAATTCCTGTCGAAAATCCACGAGATGTGGCACCAGGGAATCGAGTACAAGTGCAACAACTGCAAGCAGAAATTCTTGAACAAGGAAAAGATGGACAAACACATCGGAGAGAATCGGTGCAGCAATCGTCAGTCTCTGATGAGGCTCCCGTGCGACATCTGCGGGAAGTCGTACAGATCCAAATTCGGGCTCAGCAAACATTACATCACGCACACGCCCAAGGAACTCCGACCCGTGAAAAATCGAATGAATTGCGAGTTCTGCGGGAAGTGGTTCGAGAACAATAACGGACTACAGAGACACAGACGGATACACACCGGGGAAAGACCTTTCTGCTGTCGGTTCTGTCCGAAAGCGTTCGCTCAGGAAGGGAATTGCAAAGCTCACGAGAGGATTCACACGGGAGAGTCGAAACCTAGGAAAAAGAAAGTTCCTGCTGTCGTTTCGCAGCAAGTTGCGCAGCCTCCTCCACCACAACCTCCTCCTCCTCCGCCTCCCCCTCCTCCTGTTGCTATTGTTTCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCGCCGTGGATTCTCTGCCATATCCGGGACATATCAATCTGTATTTCTACACCACCATCGATCCGAGCGGAATTGTTCATTAG
Protein Sequence: MSIQTNQPDGSINEENEINLDESSKSNGFIYMDMSVYNEDEEILDDCEIKEEESTREEDEVNDHGLPLISVNNLSDDSDMSDNNRKQRRKMTRCKSNSFQKENLLEEVNTGQKRYRLRSRTDSSKVRNRMSPSDTKKSKRLHTCTKCNETFLNKTDLINHRGKKINFKCSGCKTSFCSEDLLHKHSIQCKNKSGSDLKMGKTYIKDKNHFENNIVMDDEVSFKCEKCSRLFSDKTKLESHVIQNQCKSINIYTCDFCQETFTRMITLRKHITTHLDNQFNGQKDSRKTNSCHVCNKKFLHAGRLKIHLLAHQGLVYKCNKCRKSFSSQESLDDHTDNVNCSLFLQECSKCGRGYRDGSKFRKHLQTHKDNKCRSCKKVFLDSFKLTEHVSNGSCSGPQKNFECDTCGRKYAKLVKLKIHILNIHHGIKYECEKCFLKFPSQEEADEHVFKGKCKPEDPSTCKICGKVFAKRDYLKKHQYMHTNVLFKCKYCYCAFMKEKSYNKHMEKMNCSKSARKIKMAEFNFKKCRLCEIEYEDEETLIAHFRATHPGQEPHQCFCCESCLPTFRDLQNHIHHHNIQKYTCNLCGKPYTSQEGFRKHRLKHKGAEFKCRYCDTEFLNESRFKFHEKTCKKNPESGYEPSQVVEKTKKKDERPKQSRQLHWESRIIMKRLRGDPKSSTDTPTGSGQENSLVSTFFDEPETDSLNERGWFDNYYRTEEDDLAFGLKKDNDQQDCDSDLDVSEFLQTNSMTKKKKTNSPTGLEGTDPTTTPDHDSERQEDGVDHSPESSSTESTSDSSEEESIEEVDLPIDYNPKKCRLCIITFGQEYELLHHFIKSHPGEYAHKCPNCDVQSPLFAQLKEHMKTHGIGMGIFNCDNCSKKFKSEKKMKAHNIRCKGMNIEAAASGDRKSLSSSVEEICKKCGKKFHTKFGYKRHKQICKGKKVKSKNFEKINTKPKEEPEIEDLHDGNDFQVSDQEEDVPKSSNNKPITKEKDPILNGNTKLAKDDVRKPEEKKKPEIKDSYTGEPPLDSFPCRLCDKKFQYERGIVMHFKSAHPGNKPLICHVCNMHLADKLKEHLKTHGIGEEFICELCGKRFNQKFLSKIHEMWHQGIEYKCNNCKQKFLNKEKMDKHIGENRCSNRQSLMRLPCDICGKSYRSKFGLSKHYITHTPKELRPVKNRMNCEFCGKWFENNNGLQRHRRIHTGERPFCCRFCPKAFAQEGNCKAHERIHTGESKPRKKKVPAVVSQQVAQPPPPQPPPPPPPPPPVAIVSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAVDSLPYPGHINLYFYTTIDPSGIVH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -