Ccol000551.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- ZFX
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000009.1:4118410-4122474[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 3.1 2.4e+02 2.4 0.0 3 23 8 28 6 28 0.93 2 16 0.087 6.7 7.3 2.1 1 23 744 767 744 767 0.96 3 16 0.23 17 6.0 0.5 1 23 786 809 786 809 0.91 4 16 0.055 4.2 7.9 0.6 2 23 901 923 900 923 0.95 5 16 0.017 1.3 9.5 0.6 1 23 928 950 928 950 0.98 6 16 1.6e-06 0.00012 22.2 2.7 2 23 953 974 952 974 0.97 7 16 6.2e-06 0.00047 20.4 0.3 1 23 980 1002 980 1002 0.98 8 16 8.4e-06 0.00065 19.9 5.0 2 23 1009 1030 1008 1031 0.94 9 16 0.91 70 4.1 1.1 6 23 1045 1062 1043 1062 0.95 10 16 0.00052 0.04 14.3 1.7 2 23 1068 1090 1067 1090 0.96 11 16 0.0028 0.21 12.0 0.0 3 23 1107 1126 1105 1126 0.97 12 16 1.5e-05 0.0012 19.1 1.3 1 19 1132 1150 1132 1154 0.94 13 16 0.0018 0.14 12.6 1.3 1 23 1162 1184 1162 1184 0.99 14 16 0.0018 0.14 12.6 3.5 1 23 1190 1212 1190 1212 0.96 15 16 0.00081 0.062 13.7 1.0 1 23 1218 1242 1218 1242 0.95 16 16 0.001 0.076 13.4 6.1 1 23 1248 1270 1248 1270 0.98
Sequence Information
- Coding Sequence
- ATGCAGAGTCACAATACAATTTGTCCAGTTTGCACCCTCTACCTGAGGGAGGGAATAACGCTGCAAGCTCATCTTGATACACATCCCAAGGAGCAAGTTATAGAAGCTTTGTTGAAGGTTTCAAATGGAGGATCCTTAGCTCCGGCGCATTATCCACCGCCAACATCTGCAAATCCTTATTTGCCATTGCATCCCAGCTCACCATATTCTCACTTGAGTCATCCTTCTCCTTATGTGAATCCTCAAGCCTCAAGTTTGACGACTGCAGTAACCTATCAACATTTCATGACAAGTAATGGTTCGAGCCTTTTACCTCATTACGTTCAAGTTCCATCTCCTGGTACAAGCTCAGTCCTTTCGAATCCAGCTATGAATTATGTTCCTAGTTCGAGTGGTGTTAACTATGCACACACTCTTTACAATCCTCTCTATAATCCTTATATTCCTCAACCTTATCCATTTACTCCACCGCTTCTTTCAGGTTATCCATTATCCTCCTTGCCTCCGATTGATTCAAATACTGAGACAGTTAGTCAAGAGTCAAATTTGACTAGCACTGTTAATACTGCTCAGACGGGAACAATACAGACAGATGTTGTAGTTAAAATGTGTACTGTTGCAACAAGCACTGAAGACAACAAAAGAGTTACTAAAAATAGTGGGTCTAAGAAACCTGGTTTGAAAACTTCGACAGCAAATAAAAGAGCCAAAATTCTCAGACAGAAGAAAAGTGATACAAGTACGGCGACGAGGTCATCATCCGAACCGATGACCCCGCCGCCGCCGCCACCTCCACCGCCGCTCCTGGCCAAAGCCCCTTATTTCATGCCTCGAATTTTGAGCTGCATAAAAAGCGAAGACGTTCCAGATTGTGCGAGACCACAATCCGTGTCGACAATAATTAGCGAACCGTCAGACAGTTCGAGTAATCTAAGTTACGAGTTCGTGGGACATAGAAAGATAAGTACAGTCATCGTCGAGAATAGTAATTCGGTACAAAGCAGCTTAAGTGAAATAAGAGATGTTCAGCAAACGGAGGAGGGTAAAGAACAAGAAGAGGATGAGGATGCTCTCATCGAGGTCGTCGATACGGAAATGGAACCATCAAAGGATCCGTTAAGCACAGAACCAAGTGAGGAAATCACCATCGATGAGGACACTAGTAAGCTTAAAGAGTGTCCCGAAGAGGAAGATGAAGAGGAGGAGGAGGAGGAGGAGGAGGTACGAAGGTCAGAACAAGAGGAAGAGACGACGATAGATGTTGACGATAGACAGGAGAAGATTTTCTACATGATCGAAGTCGAAGAAAACAAGGTCGATTTATCGAGTGAGGATCTCAATGAGGATATACCGAGGGAGATGGGAAACGAGAATATCAATCGAACCGGATCTAGAAGTTACGTTTACAAGGAGGATTCGAGTAGTGACAAAACAAACACAAACTATCCGGAGTTCGTGGGTGTGGATAACGTTCAGTCAGATGATAGAGCTATGGACAGTCGGAGTGAGTCTCGGACGCCTTCGAATGAATTCGGATATTTTAACAGAGAATACTCGAACTTGTCGTGCGATTCGAATAGATCCGTGATAACCGAGAACATCAGGATGAGAGAGAGCAGCATCCGGGGACCGGATAACAGTTCGTTGACGTATACCGATTTGCAACCCGCGAAACCGTCAAAAAATTTTCGTGAGCTCGAAGTTACGCGATCTCTCAACTTCAACAACTTCGCGGAAGTAGATGCTCTCAATGGAGGTATCAAGATAGTCTTCAATAACCAGTCATCCAATCCACCTTCTGATCATTTAGGCAAAATGGGATGCAAGTTAAGGGGGGGCAGTGGCCCGCCTGGGTTTCTAAAAAGCGAACATCAAGGGAGCCACAGCCCCACCATCGTAGACTCTGTCATTCAAATCGTCGCCTCGAATGGAGAATCCAAAGGCGAATTCACCTTCCGTGATAGTTATCCAGGTTCGAGTAGTCATATATCGTCGGAGAGTCATCTAGATAATTCGGAAATGTCTCCGTTGGCTTTAAACATCCAAGCGGACGAATCCATGCCGGCGAGAGGAGAATTGTCAGAACAGGAAAGTCTGGGAGCGGAAAACACGACGTGGAACCTCTACCACGGAAGCAATGCCATGGATAATATGAAAAGCATGGAAGAATGGAGAAACGAGAATGCTCAATCGGTATCGGTAATCGGTACAAAGAAAAGCTCGAAAGCTTTTAGATGCTCCATTTGTAGTGAGGTGTTCTCGTGTCCGAAGGAGAGGAGAGTTCACAAGAACACTGTACACGTGACCAAGAGCAGTAAAATGGAAAAGGGTTCGCCTACGAAGAAAGCAAAGAACTTCGAATGTAACTTTTGTTTCGAGGTGTTTGCATCCGTTCGGGATCGTAAACAACACGTCGCACAGAACCACGTCCTGAATATGAAGAACAGAAAGAACGGAAGCAATGAAATCAAGATGGAAAACGCAGAACCCGAATACATGAACGTGATAGTTAGTCCGGATGGTAGCGCTCCGACGGCTCAGGTCAAAAACGAAACCGAACAGGAGCACAAATTCAAGACTGAAATAAGTAACGTGACGACGACGAGTGTCATCACGACGATGACTACATCCACTACAATTAGCACAACTACGATACGTTCGATTCCAACTCCGACCGATGTGGATCCGCATCGGATGAAATACTGTTCCAAGTGTAGTCTCCCGTTCGAAGGCACGAAGAAACTTCGAGAACATTTAAGACTGGCACACGGTGAGGTGAGATTCAAGTGCGACAAGTGTTCCGCTTGTTTCGACGAAGAACCCGAGTACAACGACCACCTCCTGGTTCATCCGTTGGTCTGTGAAAAGTGCGGGAAAACGTTTCACCGGAAACCGAACCTGAATCTCCACATGAAAAGACATCTCGAAGTGAAACCGTACGAGTGCTCACTCTGTCCGAAATCATTCATAACGCGTCAGAAACTGGAGGAACACATGAACGGCCACTCGGGTAAGAAACCTATTAAGTGCAGTCTCTGTGATAAAACTTTCAGTAGACATTCGAATCTCATTCAGCACAGGAACTTACATCATTTTAACGTGAGGAAAAAATTAAAGGATTATGTGTGCAGGTGCGGAGAGGTATTTCACAGCATGAAGAAACTCGAGTGGCACAAGGAAATCCACGACCGGAAACCGAAACCGTGTCCGTTTTGCTCTCAGAAGTTCATACACAGCGCGAGCGTGACTCGGCACATAAGACGCTCACACGTTCCTGAATATCTCCCCGGTGACAATCGCGAATTGGACAACGTGAACTGTCCGATATGTGAGAAAGTGTATCTCAGGTCTTCCTTAGTCGTTCACCTAAGGGTTCACAACGGAGAGAAACCGTTCCAGTGCAAGATCTGCAACAAGAGATTCTCGACCAAGTGGAACCTGGAACTCCACAACTGGACTCACCAATCCCGTAACAACATGCCGTACAAGTGTCACATATGCAAAAGTGCTTTCTTCCGCGAGCCGGATTTCGTGGCTCACCTAAACTCTCACCGGAACTACAAACCGTTCACGTGTAACATATGCGGTCAGAAATTCATCCGGAAGTACAGTTGTCTCCGTCACCAGGAGGAACATAAGAAAACGAAACAGTTCGTGTGCGCGGTGAGCGGGTGCGAGAAAAGCTTTCACCGGGGCTATTACCTGAGGGATCACATGAAAGTTCACACGGGGCTCCGACCGCACACGTGTCACATATGCGGTAAAGCTTCCAGTACTAAGTCGAACCATAACAAACACGTGCGGATCCACGATACGAGAGAACCAGTCAATACGGAAAATTGA
- Protein Sequence
- MQSHNTICPVCTLYLREGITLQAHLDTHPKEQVIEALLKVSNGGSLAPAHYPPPTSANPYLPLHPSSPYSHLSHPSPYVNPQASSLTTAVTYQHFMTSNGSSLLPHYVQVPSPGTSSVLSNPAMNYVPSSSGVNYAHTLYNPLYNPYIPQPYPFTPPLLSGYPLSSLPPIDSNTETVSQESNLTSTVNTAQTGTIQTDVVVKMCTVATSTEDNKRVTKNSGSKKPGLKTSTANKRAKILRQKKSDTSTATRSSSEPMTPPPPPPPPPLLAKAPYFMPRILSCIKSEDVPDCARPQSVSTIISEPSDSSSNLSYEFVGHRKISTVIVENSNSVQSSLSEIRDVQQTEEGKEQEEDEDALIEVVDTEMEPSKDPLSTEPSEEITIDEDTSKLKECPEEEDEEEEEEEEEVRRSEQEEETTIDVDDRQEKIFYMIEVEENKVDLSSEDLNEDIPREMGNENINRTGSRSYVYKEDSSSDKTNTNYPEFVGVDNVQSDDRAMDSRSESRTPSNEFGYFNREYSNLSCDSNRSVITENIRMRESSIRGPDNSSLTYTDLQPAKPSKNFRELEVTRSLNFNNFAEVDALNGGIKIVFNNQSSNPPSDHLGKMGCKLRGGSGPPGFLKSEHQGSHSPTIVDSVIQIVASNGESKGEFTFRDSYPGSSSHISSESHLDNSEMSPLALNIQADESMPARGELSEQESLGAENTTWNLYHGSNAMDNMKSMEEWRNENAQSVSVIGTKKSSKAFRCSICSEVFSCPKERRVHKNTVHVTKSSKMEKGSPTKKAKNFECNFCFEVFASVRDRKQHVAQNHVLNMKNRKNGSNEIKMENAEPEYMNVIVSPDGSAPTAQVKNETEQEHKFKTEISNVTTTSVITTMTTSTTISTTTIRSIPTPTDVDPHRMKYCSKCSLPFEGTKKLREHLRLAHGEVRFKCDKCSACFDEEPEYNDHLLVHPLVCEKCGKTFHRKPNLNLHMKRHLEVKPYECSLCPKSFITRQKLEEHMNGHSGKKPIKCSLCDKTFSRHSNLIQHRNLHHFNVRKKLKDYVCRCGEVFHSMKKLEWHKEIHDRKPKPCPFCSQKFIHSASVTRHIRRSHVPEYLPGDNRELDNVNCPICEKVYLRSSLVVHLRVHNGEKPFQCKICNKRFSTKWNLELHNWTHQSRNNMPYKCHICKSAFFREPDFVAHLNSHRNYKPFTCNICGQKFIRKYSCLRHQEEHKKTKQFVCAVSGCEKSFHRGYYLRDHMKVHTGLRPHTCHICGKASSTKSNHNKHVRIHDTREPVNTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -