Ccol006466.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- salm
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000005.1:16592695-16612970[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 5.3 4.1e+02 1.7 1.2 1 21 45 65 45 66 0.94 2 10 4.3e-06 0.00033 20.9 0.9 1 23 385 407 385 407 0.98 3 10 8.4e-06 0.00065 19.9 2.1 1 23 413 435 413 435 0.98 4 10 0.053 4.1 8.0 3.8 2 23 841 862 840 862 0.98 5 10 5.2e-08 4e-06 26.9 0.6 1 23 868 890 868 890 0.97 6 10 5.1e-05 0.0039 17.5 2.6 1 23 900 922 900 922 0.98 7 10 0.0022 0.17 12.3 2.1 2 23 1185 1206 1184 1206 0.97 8 10 2.1e-07 1.6e-05 25.0 1.4 1 23 1212 1234 1212 1234 0.99 9 10 1.2e-06 9e-05 22.6 4.0 3 23 1333 1353 1331 1353 0.96 10 10 1.9e-07 1.5e-05 25.1 0.8 1 23 1359 1381 1359 1381 0.98
Sequence Information
- Coding Sequence
- ATGAATTACTCAGAAATGAATAGATTTTTGAAAAATTATGACATGCCTCGAAAACACACCGGAGGAGGTCAAAGACGACATTGTGGAGGCGGGAACGGTAGCACGTCCACATCTGAGGACGAAACACCTCCTCACGTGTGCTGCCACTGCCGATTGGAGATCTCATCCCTAGTGGAGTTACTGGAACATCAAAAAGACTGTAGTACAAAATTCGGTATTTGTAACGGGGATCAGTCAGATGCTGAAGATTTGGCAACTTACGGGGACGACGAAGAGTTTTGTCATGAGGGAGAAAAAAGACAAGAAGTCGAGAGGCGACAGAGGCAAGATGCCGAGAACAATAATAGCGTTGAAGGGGAAGAAGGAGAAAAAGAAAACGATTTGGCTCTCGGGTTTTCTTTCTCCGTAAGTGGTGTTCCGGGTCATGTAACTTTAGAAGCATTGCAGAATACAAAAGTGGCGGTGGCGCAGTTTGCGGCTACTGCTTTGGCCGCCAACGGAGACAATCCGGCAGCGCTTCAAGAACTGGCCGTTTTACAATCAACGCTTTTCACGCTGCAACAACAACAAATGATGCAGCTAAGTTTAATTCAGCAGCTTCAGAATCATCTCACAGTTCATCCGAAAGAGGAAGGACCAGCTTCGCCCTCATCCTCTTCTAATTTGCCGACCAATCCCGGTATACCAGTTCCTGCAGCACCTCCGGTTCAGCAACCTTCAGCGAAGCCCCTCCGGATTCCAACTCCGGTGAAAAGGGAACACGGTTCTGTGTCTCCTCCTGCTTCTCAATCCATCCCTGCTACGCATAAGCAACAGACTTTCGAACATCAGCCCCTAACGATTCCAAAGCCACCGGTACCTCTTGGTTCTCCCTTGCAACCGGCGCAACCGGCGCCACCCACTTCAACGCATCCGCCGCTTTGTTCCATATCCTCGAGTTTGGCATCTTCTATAATCACAAATAATGACCCTCCTCCATCTCTAAATGAGCCAAACACTTTGGAAATGTTACAAAAACGTGCTCAAGAAGTTCTCGACAACGCCAGCCAAGGTCTTCTTGCGAATAATCTCGCGGACGAATTAGCTTTTCGAAAAAATGGGAAAAATTCTCTTTCTCCATTGTCAGGAGGACGGAACGAACCTTTCTTCAAGCACCGCTGTCGGTATTGCGGAAAAGTTTTTGGAAGCGACTCTGCTTTACAGATTCACATCCGGTCACACACAGGTGAGCGTCCCTTTAAATGCAATGTATGCGGCAGTCGATTCACCACCAAAGGAAACCTGAAAGTGCATTTCCAGAGGCATACTTCTAAATTTCCACACATCAAAATGAACCCTAATCCAGTTCCCGAACACTTAGATAAATATCATCCTCCACTCTTAGCCCAAATGAACAATCAAAACCTGGCTCCAGGAATTCCACCTCATCAGACCCACACGCATCCGCATCGTCCTTCCCCTCACTATCCCTTCACTAGTAGCCCCACCTTTCCCGCCCCCACCTTGTCACTCTTTAGGCCTCCACTACCTCACGAACTTCTTCCGAGACCCTCGCCAGTTTTAGCGCCACTTAGACCTCACGAACCTAATCTCTTGAAACCCTTAATACCTCTCCCATTGTTCACCGCAAGGGATGAGCAAGACACGCCGGAAAATTTAAGCAAGCCTCAAACTCGTTCCACCTGTTCTTCAGAATCAGGAGATTTACGTGATCGGTACAAGGACAGATCGAGAAGTCACTCACCATCTTTAGTCAAGCAGGAAATTTGTGAAATAAGTAATAATGGTAAAGATTTGGTACAACAGCATTTTACGACATGTGATCAAGACATGACAAAAACCATAGCCGAGGATAATAGTCATGGAAATAACGAAGAATGTGCAAAGGGGAAGAATTCCGAGGAAACGATAGAAAATGCAGAAAAATGTGAATCGTCGGCAGAGGAAGAAACGGAGAGTTGTAAACAAGAAAATCCCAAAGAAAGACTGAGCCCGAAAAAAGAAGTGCAATCTGAATGTGAAAGACTTAGAAGAGATAAAAGTGATACGGATAAAAACGCATATATGTCATCCCCGCATTTTGACGAATGCAGTATTGACAGTAAATACAGTGACGAAGACATTATAGAAGAGAATTTTGACGCGAGGAATACTGCTGATTCAGAAAAATTAGAGGAGCAGCCGGAAAATCTTTCGAGCAAAAGCCCTGGCATTAACCAAGGATCAGAGACTTCTAGTCAACGAACGGTCGTTAAAACCGTACCGTTCTCCAACACCCACATGTCTCCTCACAGTAGCAATTCTTCGGGGAGTAATAATTTTAACGTTCAGATCGGAAACATGACAAATTCTCATGAAATCGACCCAGCCAAAGATCCAGCCATTTACAATTCGCTTCTCCCGAGGCCAGGTAGCAATGACAATTCTTGGGAAAGCCTGATAGAGGTAACAAAAACATCAGAAACTTATAAACTTCAGCAGTTGGTAGATAACATTGAGCACAAGTTGACTGATCCAAATCAGTGCGTCATATGTCACAGAGTGTTATCCTGCAAGAGCGCTTTACAAATGCATTACAGAACCCATACTGGCGAACGTCCTTTCCGTTGTAAAATTTGCGGAAGGGCTTTCACAACCAAGGGAAATTTAAAAACCCACATGGGAGTGCACAGACTCAAACCGCCAATGAGAGTTTTGCATCAGTGCCCGGTTTGTCACAAAAAATTCACAAATGCTTTAGTTCTTCAACAACATATCAGACTGCATACGGGAGAACCTACAGACCTCACTCCGGAACAGATTCACGCAGCAGAAATAAAAGACTTCTCTGGTTCTGGGTCATTTCCTCATCCAAATTTCCTGTCCCATGGTTTCCCCATTCCTGGACTTCCCCCTCCTGGCCTTCATCTAGGAATAAGATCAGAATTTGATCGGGATTCGGAAGCAAAAGAGGATCAACACGATGACGACATGTACGACGAAGACGACGACGACTTTTCCAACAGCAGCGAGTCTCAACCTCTCCATTTCCCAACGTTCCCGTCTTCCATATCAGCCATCGAGAATCAAGTTCGAACAATTACCACGATGGCTTCACATTTATCTGCATCTGAACTGAATCGGTCGGCAGAAGACCTCTCGTTGAACAAAATCGCATCACCTACATACCAAATAAATGGCGTCAAATCTCCCGGTTCTCCAGGGCCGGCGAGTCCAAATGACTCTGATTACCGAGTTTCACCCTCTCCTCCACCTAAATCGCAAACTCCATTGAACATACCCCGGCCATCTTCTTCCCGAACACCGAGTAGTCCTACCAACAGCGAATCTAATTCTTTAGGAGCTCTGGACTTGACGCCACGATCATCGACTCTAAGGTCGAGTCCGGGTCCCCCACAGACTGGCATATTTTCCAGCCTCGGACTCATACCGTCGGGTGGACCTTCGCCGCTTATGACTTCTGCACTTTCGTCGCTAACTTCTTCAGTTTTGACATCTACGGCATTCAGTCCTCTGGGAATGGCGGTTGGACCGGCAGTACGCGGTAACACGACTTGTAACATCTGCTTCAAAACATTCGCTTGTAACTCAGCACTGGAGATACATTACAGAAGTCACACCAAGGAGAGGCCTTTCAAGTGCACCATTTGTGATAGGGGATTTTCCACCAAGGGAAATATGAAACAACATATGTTAACCCACAAAATACGAGACATGCCAGCCCACTTGTTTGAAAATAAAAAGTCTCCGACGTTCGGAAATCAACAACAAACTCCATCAGTGACTCAGAATGAAGAAATAAGCGAGGTCAGCAATTTAAGCAATAGCAATTCGGCAGCTGCAGAAGATTCAAAGATCATTTCTTCATCGAATGCCGACATGCCTGAATCGCCACCGACAAACATCGAAACGGAGACCACAACGCCCATCAAAAGATCGCCGGCAGAGAACGACCTTCCCGTCCCCAAAAGGCAGCCCAGCATGCCGAAACATTTATGTCATGTATGCAATAAGAACTTCTCCTCTTCCTCCGCCTTACAAATACACATGAGGACCCACACCGGAGACAAACCATTTCGTTGTTCGGTCTGTCAGAAAGCATTTACCACCAAAGGTAACCTTAAGGTTCACATGGGCACGCATATGTGGAGCAATGGAGCCTCACGTCGGGGTCGGCGAATGTCCCTCGACCTGCCACCGATACCAATGAACCCGAAGGATTCAGAATTTCTCCAGCGGAGGCCAGATCTTTTTTATCCATATCTTCCTACGCCATTCCTCAATGGAGTTCAACAGAAGCTAAGTGAAATGTCGGCTATGCAATCTGGAAACCATCATCCAAACAATGGTCTCATGCAATCCGGAACCAAATTCGGAAACATCCTCGGGTTTGGAGGATTCGGCAACATGGACAAATCTCTTCGGCCCAATTCTCGTTCTCCTCCCACCGACAAGCCATCGTCATCGCCTCCAGAAATGTCTCATATGGGATCATCTCCTTCAGGAGGACCGTCTGCTAACGACGACGTGCCCCGAGGAGTTTGGGATCCTTATTTCGAGAGGAAGATTAATCACAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCACCGTCGGCCCAAAGGGGAGAAGGACTGGCCGCTTAA
- Protein Sequence
- MNYSEMNRFLKNYDMPRKHTGGGQRRHCGGGNGSTSTSEDETPPHVCCHCRLEISSLVELLEHQKDCSTKFGICNGDQSDAEDLATYGDDEEFCHEGEKRQEVERRQRQDAENNNSVEGEEGEKENDLALGFSFSVSGVPGHVTLEALQNTKVAVAQFAATALAANGDNPAALQELAVLQSTLFTLQQQQMMQLSLIQQLQNHLTVHPKEEGPASPSSSSNLPTNPGIPVPAAPPVQQPSAKPLRIPTPVKREHGSVSPPASQSIPATHKQQTFEHQPLTIPKPPVPLGSPLQPAQPAPPTSTHPPLCSISSSLASSIITNNDPPPSLNEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRKNGKNSLSPLSGGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTSKFPHIKMNPNPVPEHLDKYHPPLLAQMNNQNLAPGIPPHQTHTHPHRPSPHYPFTSSPTFPAPTLSLFRPPLPHELLPRPSPVLAPLRPHEPNLLKPLIPLPLFTARDEQDTPENLSKPQTRSTCSSESGDLRDRYKDRSRSHSPSLVKQEICEISNNGKDLVQQHFTTCDQDMTKTIAEDNSHGNNEECAKGKNSEETIENAEKCESSAEEETESCKQENPKERLSPKKEVQSECERLRRDKSDTDKNAYMSSPHFDECSIDSKYSDEDIIEENFDARNTADSEKLEEQPENLSSKSPGINQGSETSSQRTVVKTVPFSNTHMSPHSSNSSGSNNFNVQIGNMTNSHEIDPAKDPAIYNSLLPRPGSNDNSWESLIEVTKTSETYKLQQLVDNIEHKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFRCKICGRAFTTKGNLKTHMGVHRLKPPMRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIHAAEIKDFSGSGSFPHPNFLSHGFPIPGLPPPGLHLGIRSEFDRDSEAKEDQHDDDMYDEDDDDFSNSSESQPLHFPTFPSSISAIENQVRTITTMASHLSASELNRSAEDLSLNKIASPTYQINGVKSPGSPGPASPNDSDYRVSPSPPPKSQTPLNIPRPSSSRTPSSPTNSESNSLGALDLTPRSSTLRSSPGPPQTGIFSSLGLIPSGGPSPLMTSALSSLTSSVLTSTAFSPLGMAVGPAVRGNTTCNICFKTFACNSALEIHYRSHTKERPFKCTICDRGFSTKGNMKQHMLTHKIRDMPAHLFENKKSPTFGNQQQTPSVTQNEEISEVSNLSNSNSAAAEDSKIISSSNADMPESPPTNIETETTTPIKRSPAENDLPVPKRQPSMPKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCSVCQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPIPMNPKDSEFLQRRPDLFYPYLPTPFLNGVQQKLSEMSAMQSGNHHPNNGLMQSGTKFGNILGFGGFGNMDKSLRPNSRSPPTDKPSSSPPEMSHMGSSPSGGPSANDDVPRGVWDPYFERKINHNXXXXXXXXXXXXXXXPPSAQRGEGLAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -