Basic Information

Insect: Columbicola columbae
Gene Symbol: -
Assembly: GCA_016920875.1
Location: JADMLL010000012.1:1564606-1567981[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00034 0.026 14.9 1.1 1 23 220 243 220 243 0.92

2 17 0.00075 0.058 13.8 2.1 2 23 248 269 247 269 0.96

3 17 0.00011 0.0085 16.4 0.6 1 23 308 330 308 330 0.96

4 17 0.0015 0.11 12.9 0.1 1 23 336 358 336 358 0.99

5 17 5.5 4.2e+02 1.6 0.2 1 10 383 392 383 405 0.73

6 17 1 77 4.0 0.0 1 21 452 472 452 473 0.80

7 17 0.057 4.4 7.9 1.5 1 23 599 622 599 622 0.94

8 17 0.011 0.86 10.1 2.9 1 23 625 647 625 647 0.97

9 17 0.00082 0.063 13.7 3.1 1 23 670 692 670 692 0.95

10 17 0.00037 0.028 14.8 0.3 2 23 699 721 698 721 0.95

11 17 0.0068 0.52 10.8 4.9 3 23 726 746 724 746 0.95

12 17 1.7e-05 0.0013 18.9 0.7 1 23 754 776 754 776 0.97

13 17 0.42 32 5.2 2.2 1 23 782 804 782 804 0.85

14 17 1.6e-05 0.0012 19.0 0.7 1 23 810 832 810 832 0.98

15 17 1.2e-05 0.00091 19.5 4.2 1 23 838 860 838 860 0.99

16 17 3.4e-05 0.0026 18.0 0.6 1 23 866 888 866 888 0.98

17 17 0.0008 0.061 13.7 1.2 1 23 894 917 894 917 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00034	0.026	14.9	1.1	1	23	220	243	220	243	0.92
2	17	0.00075	0.058	13.8	2.1	2	23	248	269	247	269	0.96
3	17	0.00011	0.0085	16.4	0.6	1	23	308	330	308	330	0.96
4	17	0.0015	0.11	12.9	0.1	1	23	336	358	336	358	0.99
5	17	5.5	4.2e+02	1.6	0.2	1	10	383	392	383	405	0.73
6	17	1	77	4.0	0.0	1	21	452	472	452	473	0.80
7	17	0.057	4.4	7.9	1.5	1	23	599	622	599	622	0.94
8	17	0.011	0.86	10.1	2.9	1	23	625	647	625	647	0.97
9	17	0.00082	0.063	13.7	3.1	1	23	670	692	670	692	0.95
10	17	0.00037	0.028	14.8	0.3	2	23	699	721	698	721	0.95
11	17	0.0068	0.52	10.8	4.9	3	23	726	746	724	746	0.95
12	17	1.7e-05	0.0013	18.9	0.7	1	23	754	776	754	776	0.97
13	17	0.42	32	5.2	2.2	1	23	782	804	782	804	0.85
14	17	1.6e-05	0.0012	19.0	0.7	1	23	810	832	810	832	0.98
15	17	1.2e-05	0.00091	19.5	4.2	1	23	838	860	838	860	0.99
16	17	3.4e-05	0.0026	18.0	0.6	1	23	866	888	866	888	0.98
17	17	0.0008	0.061	13.7	1.2	1	23	894	917	894	917	0.97

Sequence Information

Coding Sequence: ATGAAAACTCAAAGCAGTGATTTGAGGACCCTCAAACCGATTCTGCCAAAACTGAATCCTATGGTGACTCGTGTCATAGAGATAAATTCACCTCCGATGCAGATGTGCAAATGTTTCGTCTGTGATGAAAGGGTCATCAGCAGCGGCGTACCTCTCCTACAAAGTACCACCCAAGCTACAAACACAGATCTCCCGACGAAGATAGGACAGCTTATGGGTGAGAAGTTCATGGTGGTCGTGTCGGCGGATGACGTTCTCTGTCGGAAGTGCCACGCTTTAGTAAACCATGTGGATAAATTAGAATCGGATTTGCTTCTAGTCAAAAGATCTCTAAGAAATCATTTAAAAAAGAAATATGGACTGAACGACGATATCAAAGAGACTGATACTCTGAAACGAGACAGTGAAGCAGAGTTGGAATACTCCCTCGTTCAAGATGTCGAATCAGAGGAAGATCACGAACCACGTTCGAAGAAAGCAAAACCGACGCGTCCTGTTCGTTTCCGAGCCATCAAACCCAAGCCTCCAGGGTCTTCTATCACCACACCAGCCTCTCTTCAGGGTTCGATCCAACTGCTCAAATGTCCTGCTTGCAATTTCATCACGACAGAACCGAACGTTCTCTCCTGTCACCGTTTGGTGTGCACTTCGACGGCGTATAAGTGCACGATGTGCGACAAGAAGTTCGAAAGTCAGAAAATGATTCGGAATCACAAGATCGAAGCTCATCTCACCAAATGGATCTGCCACTTCTGCAACATCAGCTTCAACGATGAGAATAAGTTTACGGTCCACATGAAAAATCATTTGGGAGATAGACTTAATAGCAAAACGGGTGTAAACAAGCCAAAGGTGGCGACATCCGCGACGACAGAAGCAACATTGGCGGTGGATCTGAAGAAGGACAGGCCATTACTCAGTTTTAAGTGTCCTCATTGTCCGGAAAGCTTCGAAGCTTTCAGTCAACTTCAAATCCACTTAGTTAATCATACGAGTTCGGTGACGTTTAAGTGCGTGAGATGCGACGTCGGGTTCGAAAGCAAACTAGCACTGATTGAACATGTTCGGACGCATGGCGATTCGGTCCCGGAGGACTACGAACTGGCTGAGAGTCTGGTGAACGTGAAAGACTCGAACGATACATTATACTCATGTCCGATGTGCTCTCTCAACTTCCTCCAAGAAGAAATCTACCTCCAGCACTTGACCATGCATCAGGATCTGGCGTCTGCGGTCGAGGGAGCGACGATATCCGTCGATGATTCGACCGAAGCTGCCGCGGCCGCTCTCAGCCTTCTCAACGACCTTGAGGAAAGTGCTAAAAACGGGCCGAAAGTCGATGGAGAAGGAGATTTTGAGTGCCCGAATTGCGGGGAAAGAAAAGAAGACGTCGAGACATTGGAATTGCATCGTTTGACCGAGTGCATGGGTGTCGAGAAGAAGTCGGTGGTGAACGAAGTGAAACAAGTTAGCGAGACTGAGTTCCAGGAAAACGCAGGTGAGGAGGCTTCACATCTTGAATTAAATCCATTACTGTATGTAAATTCGCTAAACGTTCAGTTAGTCGATGGGAACGTTGTATTGCAGAATGCACCAACAGGTGACAAAAGTAACGAAACCGAGTCAAACGCGAACAGTAATACAGTTGAAGACATTCTTGAAAACATGTTTCAGGTGAAGGATGAAGATCGTGGTGGTGGTGGTGATGATGATAATGGAAAACGTGACAGTGGTGGTGTTGAAGAACAAAACGAGGTGCCGGAAGGTGATACAAAGGAGAGTACAAACAAGACTTTCGTGTGCGCCGATTGTTCGTTCACCACGAAAAACTTCACGACGCTCAAACAGCATTTTGCAAAAGTGCACGAAGCGTACAAGTGTTGTATATGTAAAAAGAATTTCCTTATGGAGGACCTGAAGAAACACATGGCGAGCGAACACGGATCGAGTTCGAGTCCTCCGGATAGTCCCAAAGGGAAATCCCTCGTCACTGTATACCCGAAGAACTATTCGTGCGTTCACTGCGGCGAGAAATTCTCCAACAAGAGAGCGTTGCATCTCCACGAAGTCAAACATCCAGAGAACCTGAACATACAGTGTCCGGATTGCGGGGAGAAGTTCGCGAGAGACAAGTTCCTCAACGAGCACCGGGAGTCCTTCCACAAGGTGTCTCACTGTCGGTTTTGCAACAAGGCTTTCTCAAACACGAAACAGTTGAAGTCGCACGAGTCGCGACACGTGAAAAGTGACAAAACGGAATTCAAGTGTCCGGATTGCGATCGGATATTCCAGACGCCGACCGGGTTGAGACATCACAAAGCTATACACACGGGAGAGTTCAAGTACAAATGCGAGTTTTGCGAGAAAGGATTCGTGTCGAGGGTCCGATGCGAAGAACACAGAGCCTCACACACAAAGGAAGCTAGGTACTCGTGCGAGATATGCGGGAAGAAGTTCTCGTTTCAAGCTACCTACTGGATACACCGGAAGTGGCACGACAATCCGACTCCGTATAAATGCGAATACTGTGGACGGTTGTTCAAACATTCGTCTTTGCTTTCGGTACACAAGAGGAAGCACACGGGTGAGAGACCATACGAATGCCCTCACTGCGATCAGTCTTTCGCTGTCGGCAACACTCTAAAACGTCACCTCATGTTGCACACGGGCGTGTTTCCATTCACGTGTCAGATCTGCGATCAGGGATTTTCGGGGAAACACAAAATGGCTCTGCACATGAGCAAAGTCCATCAAGACAATTCCCTCCTCGACCAGCAGATGAACAAGAAACCGGCCGAATACAAAATGGTCGTGAAACAGGATGAGGGAGAGGAGAAACCGGAAGAAAGCTCGGAAAACCAAACGTGGATCCTTACGGAAAACGACAACTCCGGCTCTCAATTGCTCACTATACAAACGGAAGAAGGTGAAAACATTCCGTGTGCCTTACTTACCGACGACATGATCGGGAACCTGGTCAACACGAACAACGGAATCGTCGAAATCATTCCGTACGACACGATCCAAACGGAAAACGAAGGTGATGAAGGTGAGGCTGACGGCGATGGCGGCGGCGGCGGCGGAGGAGGAAACGAAATCGGTTTCATACTCATGAACCAATCAGATCGATCTAGTCTCGGTATAGCCAGCGACGAGGATTTCAGAGAGGAGGACGGAGTCCACGTTCAAAACGGAGACAAGGAGTCAGCAGAGGAGACATCACAGAGGAATCCCCCCGACGACATCCTCATCAAGGCGGAGGGAAACGAGCCTAATCAAAGCTTTCCCTCCGAATTATAG
Protein Sequence: MKTQSSDLRTLKPILPKLNPMVTRVIEINSPPMQMCKCFVCDERVISSGVPLLQSTTQATNTDLPTKIGQLMGEKFMVVVSADDVLCRKCHALVNHVDKLESDLLLVKRSLRNHLKKKYGLNDDIKETDTLKRDSEAELEYSLVQDVESEEDHEPRSKKAKPTRPVRFRAIKPKPPGSSITTPASLQGSIQLLKCPACNFITTEPNVLSCHRLVCTSTAYKCTMCDKKFESQKMIRNHKIEAHLTKWICHFCNISFNDENKFTVHMKNHLGDRLNSKTGVNKPKVATSATTEATLAVDLKKDRPLLSFKCPHCPESFEAFSQLQIHLVNHTSSVTFKCVRCDVGFESKLALIEHVRTHGDSVPEDYELAESLVNVKDSNDTLYSCPMCSLNFLQEEIYLQHLTMHQDLASAVEGATISVDDSTEAAAAALSLLNDLEESAKNGPKVDGEGDFECPNCGERKEDVETLELHRLTECMGVEKKSVVNEVKQVSETEFQENAGEEASHLELNPLLYVNSLNVQLVDGNVVLQNAPTGDKSNETESNANSNTVEDILENMFQVKDEDRGGGGDDDNGKRDSGGVEEQNEVPEGDTKESTNKTFVCADCSFTTKNFTTLKQHFAKVHEAYKCCICKKNFLMEDLKKHMASEHGSSSSPPDSPKGKSLVTVYPKNYSCVHCGEKFSNKRALHLHEVKHPENLNIQCPDCGEKFARDKFLNEHRESFHKVSHCRFCNKAFSNTKQLKSHESRHVKSDKTEFKCPDCDRIFQTPTGLRHHKAIHTGEFKYKCEFCEKGFVSRVRCEEHRASHTKEARYSCEICGKKFSFQATYWIHRKWHDNPTPYKCEYCGRLFKHSSLLSVHKRKHTGERPYECPHCDQSFAVGNTLKRHLMLHTGVFPFTCQICDQGFSGKHKMALHMSKVHQDNSLLDQQMNKKPAEYKMVVKQDEGEEKPEESSENQTWILTENDNSGSQLLTIQTEEGENIPCALLTDDMIGNLVNTNNGIVEIIPYDTIQTENEGDEGEADGDGGGGGGGGNEIGFILMNQSDRSSLGIASDEDFREEDGVHVQNGDKESAEETSQRNPPDDILIKAEGNEPNQSFPSEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -