Basic Information

Insect: Columbicola columbae
Gene Symbol: -
Assembly: GCA_016920875.1
Location: JADMLL010000010.1:10901242-10906688[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00063 0.048 14.0 1.9 3 23 162 183 161 184 0.94

2 16 0.2 15 6.2 0.1 2 23 206 228 205 228 0.94

3 16 0.13 10 6.7 0.2 2 23 244 265 243 265 0.90

4 16 0.0075 0.57 10.7 1.8 1 23 281 304 281 304 0.96

5 16 1.3 1e+02 3.6 0.2 2 23 322 344 321 344 0.85

6 16 0.0055 0.42 11.1 0.6 2 23 395 416 394 417 0.93

7 16 0.00069 0.053 13.9 0.4 2 23 427 449 427 449 0.95

8 16 0.0012 0.095 13.1 1.3 1 21 503 523 503 524 0.95

9 16 0.00018 0.014 15.7 0.6 1 23 529 552 529 552 0.90

10 16 5.9e-06 0.00046 20.4 2.0 2 23 559 581 558 581 0.96

11 16 0.0023 0.17 12.3 0.1 1 23 588 611 588 611 0.94

12 16 0.00012 0.0095 16.3 0.6 1 23 617 639 617 639 0.98

13 16 0.0001 0.0078 16.5 0.7 2 23 647 668 646 668 0.97

14 16 1.6e-06 0.00012 22.2 1.6 1 23 674 698 674 698 0.96

15 16 0.00035 0.027 14.9 2.8 1 23 704 726 704 726 0.95

16 16 0.026 2 9.0 4.6 1 23 732 755 732 755 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00063	0.048	14.0	1.9	3	23	162	183	161	184	0.94
2	16	0.2	15	6.2	0.1	2	23	206	228	205	228	0.94
3	16	0.13	10	6.7	0.2	2	23	244	265	243	265	0.90
4	16	0.0075	0.57	10.7	1.8	1	23	281	304	281	304	0.96
5	16	1.3	1e+02	3.6	0.2	2	23	322	344	321	344	0.85
6	16	0.0055	0.42	11.1	0.6	2	23	395	416	394	417	0.93
7	16	0.00069	0.053	13.9	0.4	2	23	427	449	427	449	0.95
8	16	0.0012	0.095	13.1	1.3	1	21	503	523	503	524	0.95
9	16	0.00018	0.014	15.7	0.6	1	23	529	552	529	552	0.90
10	16	5.9e-06	0.00046	20.4	2.0	2	23	559	581	558	581	0.96
11	16	0.0023	0.17	12.3	0.1	1	23	588	611	588	611	0.94
12	16	0.00012	0.0095	16.3	0.6	1	23	617	639	617	639	0.98
13	16	0.0001	0.0078	16.5	0.7	2	23	647	668	646	668	0.97
14	16	1.6e-06	0.00012	22.2	1.6	1	23	674	698	674	698	0.96
15	16	0.00035	0.027	14.9	2.8	1	23	704	726	704	726	0.95
16	16	0.026	2	9.0	4.6	1	23	732	755	732	755	0.98

Sequence Information

Coding Sequence: ATGGATGAAACAGAATCGCAAGAAATTGTGGTTGATTTTGGAAAGATTTGCCGGTTGTGCCTGACGGGTGATGGAGTTCTTATCAGTTTGTTCTCGAAAGATTTCACTCTTGACGGTGAAAATAAATCAATACCAGAAAGAATCATGGATTTAATGTCTATTAAGGTTTTGAAAGATGACGGTTTCCCACCTTGGATATGTCATAACTGCCTTTCAGAAGTGGATAAATGTTATGAGTTTTTCAATATGTGTAGAACATCCCAAGTTACCTTAAATGAAAGTTATATATCTGCCCTATCGGAAGTTGGTCTGAATTTGGCACTGATAAAGGAAACCAATGAAAATGAAGATAGTAAGGAAATTGAAGAGAAGAGCAAAGAAATCACCATATTCTATACAGAGGGACCTGAAATCAAAGAAGAAATGTTAAGTGATACAGAAGTAGAGACGGACACAACAGCGGAAACGGAAGGAGAAAACCTCTGCAGCGACTGTTCAAAACAGTTCAAGAGCAAAGAGGAATTGTTAAATCATCGAGTGAGCGTTCACCATGATGACCTCGTGACTGAATCTAAGAAAATGAAGGAAGAACTCGAGGAGAATGGAGGGTTCTGGACTTGCGATCCGTGCGGAGGGAAATTCAACTCACGAAACGGGATAATCACTCACATCCGGTCGAAACATTTCAAACAGGAGAAAGAATCCTGGACGAATTTCATGAAACTGGTTAGCTGCAGGTATTGCGGTTTGACATATGGAAGAAGGAACCTTCTCGGACACCTGGAAACCGTTCACAGGCTCACGAACGGCGTGGATATCGATCAGAAAGATTTAGGCTCCTTCGACTGTCGGATTTGTTATCGGCCCTTCTTACGTCACTCGTCGCTTCGCAATCACATCGAAAAGGTTCACAGCAATAATATCGAAATGATCGCCGACTTCGAGAACTGCGAGATCGTTTGGAACTGCACCGAATGCGATTCGTCTTTCTTGGAGGAGGTGAACCTGATTCAGCACTACGGAAACAAACATTCGAAGTACCCGAACGAGGTGGACTCGCTGAGAGCACTCAAAAACCGAAGTCTCATCTGTACCTGCGGCGTAATCAATTCCAATGCCTTCGACTCGAGCCTACACGAAATCTTCTACCATTCCAAGGAAATACGCGAAGACAAAGACATCGAGTGTCCCGGATGTAAAGAGAAATTCCACGATTGGAAGGCGGTGCAATATCACCTGATAGCTCATCACTGGTTCGTGTCCATGAGCTACGAAAACGAGTGCGTGTTCTGTAACCTGTCTTTCGATTCCAACGATTCTTTACGTAGTCACCTGATCAAGGACCATGAAATCGGGTTCGAGGAAAACACGATGGAAGAGGGTAATAAACCGAAGAGGAGGAAGAAGAAGGATGAAGTAAGAGAGAATGGTAAGGTAGAGGAGGAGGCGAATATAAAAGAGGCGAAGGAGGAAGAGGTTGGAGAAGAGCGAACTTCGGGAGATTATTTCACGTGCGACACGTGCGAAACTTGTTACAGTACCGAGGAGGAGTTACAGAGTCATAAAAAAGTGTGTCAGGACTCGCACGTGTGTAAGCTATGTGGTAAAGCCTACTCCACGGGCTATGGGTTAAAGAGACACGTCGCGGATTACCACAACACAATTTTACCCATCAAGTGCCCTCTTTGTCCGAAAGTTTTCCCCCGGAAAATGAATTTGCACAATCACTACAAAAGAAGACACTTGAAAATGGTCAAGAACTATGTCTGCTCGTATTGCGGTCTGTCTTTAAAGGGTAAAGTCGCGCTTAGAAGTCACGAAGACAGACTCCACAGAAACATTCGTAGTTACAAGTGTTCGGAGTGTCCGGAAGCGTTCACGACGCGAACGATTTTAAGGAAACACGCTCAGAGACACATGACGGAAAGGCCGATGCTTCAGTGTCAGTACTGCGAGCGGAAATTCAGCACGATCAGCGGTATCGAGAGACACGTGAAAACGCACGAAGGGGTCAAGGAATTCACGTGCGATTTGCCCACGTGCGGGAAATCGTTTTACACGAAAAGCGAACTCAAAAGACACGTCAAGTTTCACACGAGAGATTTCCGACACGTGTGTCCCATCTGCAACCATAAGTTCATGTCGCCGGGCGAATTGAAAAAACATTCGACGAAACACACGGGAGAGAGACCGTTCAAGTGTCATCTGTGTTCGTGTGCCTACGCGAGGAGAGACGACAAAGTCAAACACCTGAAACGGGTACACAATCTGAAGGTGAAGAGAATCTACGGGAAGCCGTTGAAGAGGTACTCGGATGGCGGTACCGAGGATACGGATTTGGTCGACACGATCATCATAGACGACTGCTCGACTGAGAACACGGCCGAGAACAATATAGTGTATTCTAATATGGACGTGGCAGCAGCAATCATAAAATGA
Protein Sequence: MDETESQEIVVDFGKICRLCLTGDGVLISLFSKDFTLDGENKSIPERIMDLMSIKVLKDDGFPPWICHNCLSEVDKCYEFFNMCRTSQVTLNESYISALSEVGLNLALIKETNENEDSKEIEEKSKEITIFYTEGPEIKEEMLSDTEVETDTTAETEGENLCSDCSKQFKSKEELLNHRVSVHHDDLVTESKKMKEELEENGGFWTCDPCGGKFNSRNGIITHIRSKHFKQEKESWTNFMKLVSCRYCGLTYGRRNLLGHLETVHRLTNGVDIDQKDLGSFDCRICYRPFLRHSSLRNHIEKVHSNNIEMIADFENCEIVWNCTECDSSFLEEVNLIQHYGNKHSKYPNEVDSLRALKNRSLICTCGVINSNAFDSSLHEIFYHSKEIREDKDIECPGCKEKFHDWKAVQYHLIAHHWFVSMSYENECVFCNLSFDSNDSLRSHLIKDHEIGFEENTMEEGNKPKRRKKKDEVRENGKVEEEANIKEAKEEEVGEERTSGDYFTCDTCETCYSTEEELQSHKKVCQDSHVCKLCGKAYSTGYGLKRHVADYHNTILPIKCPLCPKVFPRKMNLHNHYKRRHLKMVKNYVCSYCGLSLKGKVALRSHEDRLHRNIRSYKCSECPEAFTTRTILRKHAQRHMTERPMLQCQYCERKFSTISGIERHVKTHEGVKEFTCDLPTCGKSFYTKSELKRHVKFHTRDFRHVCPICNHKFMSPGELKKHSTKHTGERPFKCHLCSCAYARRDDKVKHLKRVHNLKVKRIYGKPLKRYSDGGTEDTDLVDTIIIDDCSTENTAENNIVYSNMDVAAAIIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -