Basic Information

Insect: Columbicola columbae
Gene Symbol: -
Assembly: GCA_016920875.1
Location: JADMLL010000008.1:2543736-2546484[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.011 0.86 10.1 0.7 1 23 76 98 76 98 0.99

2 13 6.7e-05 0.0051 17.1 1.7 2 23 106 127 105 127 0.97

3 13 7.7e-05 0.0059 16.9 1.8 1 23 134 156 134 156 0.98

4 13 0.00016 0.013 15.9 2.5 2 23 163 184 162 184 0.97

5 13 0.0091 0.69 10.4 0.1 1 23 193 215 193 215 0.97

6 13 0.0012 0.089 13.2 0.1 1 23 303 325 303 325 0.98

7 13 8.6e-05 0.0066 16.8 3.7 1 23 331 354 331 354 0.97

8 13 6e-05 0.0046 17.3 0.4 1 23 360 382 360 382 0.97

9 13 0.00072 0.056 13.8 0.2 1 23 387 410 387 410 0.97

10 13 0.011 0.88 10.1 3.8 1 23 416 438 416 438 0.98

11 13 2.1e-05 0.0016 18.7 0.1 1 23 444 466 444 466 0.99

12 13 2.7e-07 2e-05 24.7 2.1 1 23 472 494 472 494 0.99

13 13 9.9e-06 0.00076 19.7 1.5 1 23 500 522 500 522 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.011	0.86	10.1	0.7	1	23	76	98	76	98	0.99
2	13	6.7e-05	0.0051	17.1	1.7	2	23	106	127	105	127	0.97
3	13	7.7e-05	0.0059	16.9	1.8	1	23	134	156	134	156	0.98
4	13	0.00016	0.013	15.9	2.5	2	23	163	184	162	184	0.97
5	13	0.0091	0.69	10.4	0.1	1	23	193	215	193	215	0.97
6	13	0.0012	0.089	13.2	0.1	1	23	303	325	303	325	0.98
7	13	8.6e-05	0.0066	16.8	3.7	1	23	331	354	331	354	0.97
8	13	6e-05	0.0046	17.3	0.4	1	23	360	382	360	382	0.97
9	13	0.00072	0.056	13.8	0.2	1	23	387	410	387	410	0.97
10	13	0.011	0.88	10.1	3.8	1	23	416	438	416	438	0.98
11	13	2.1e-05	0.0016	18.7	0.1	1	23	444	466	444	466	0.99
12	13	2.7e-07	2e-05	24.7	2.1	1	23	472	494	472	494	0.99
13	13	9.9e-06	0.00076	19.7	1.5	1	23	500	522	500	522	0.99

Sequence Information

Coding Sequence: ATGGAATCGCATAAAATATTAGAATCACCATCAGGAAATAAAATCCTTGGATTTGGTGGAATCATTCGAAATATACTGAAAACTCTCTTAAAATCCGAACTGTTAGCTATCCTGGGCGAGACCAAACAAGAGAAAGATGAGTCTGAAGATGAAAATGACCACGAAAACCAAGCGTTGGATTCCGCCGAACTTCGTGATCTTAATGAAACCAGCGGTGACAAATTGTTCCGTTGTAACGTATGCTTAAATACCTATGATAATATCACGACGTATGAGGCCCACCTAAAGACACATAATAACGTCGAGCCCCAAATGGTTTGTCACATATGCGGCTCCACGTTCAAGAGCCTCCGAAAGCTCAAAGCCCACGTGACGACTCACGGCAAGAATTCATCCATATATCCGTGCAAGCAGTGTGGTCACGTGTTTTCGACTCTCGCCGCTAGAAAGCGACACAAGCTCACGCATTTGCACGCAACGGATTGGAGGTGCGAATTGTGTAATAGGAAGTTCACCCAACACAGTTTCTACATAGATCACATGCTCATGCACGATTTGAAAAAGCAGATGAAGATATTCATATGCTCGTACTGCGGAGGGAATTTCGACGACGAGTTAAGCCTACTCGAACACGAGAAATCCCATTCGGCCGAAGATGTTGAAATGACATTAAAGGACGAACGAGAGGATGAAGAAGAAGAGAGTGAAGAGAGGCAAGAACAAATCGAAATCGTGGACAACATCAAAATAGAGCCGAGTGATGAACCACAGATGATAGTCTTACCCATGGACGATGAGGATGGTTGCAACGGGGTCCAAACTGAAGGGATTCAGATAGTCGACGACATGAATGTTCTCGATGGTGACTTCACCATAATCGAAGTGACCAAGGGGGATGAAGACAAATACACTTGTGGTGAGTGCGGGAAAGAATGTGAGGGCATGGATGCCGTGAACGAACACATGAGAGAACACTCTCAGGAGGACTATTTCGAATGTTTGCATTGCAAGCGAGTGTTCAAGTTCAAAGCTTCGCTCGTTCAACACGTTCGGAAATTCCACGCGTTATCGAGACCTTACAGTTGCGAGATATGCAACGCGACGTTCGGCAATAAGAACGGTCTCAGAAATCATCGAACCATTCACCTGTCTTTGAAATATCCTTGTGAGGAATGCGGGAACGAGTTCAAGGGCCGGAGTGGACTCTATCTCCACAAGCAACGAGTCCACCGAGGGAAGAAGGACTACATGTGCGACTATTGTGGGAAGTTGTTCTCGTTGAAGTGTCAGAGAGACACACACAGACGAATACACACGGGGGAGAAGCCGTACAGGTGCGAGGTATGCGGAGCGGGATTCAGAGCTCAGAGCGGGCTCTACGCTCACCGGAAAACACACACGAACGAACGTCCGTACAAATGCGAGGTGTGCGGGAAATGTCTGAGGTTACCGTACAATCTCCGGTTACACATGAGAACGCACACGGGAGAGAAACCCTACGAGTGCGATATCTGTGGTCGAGGTTTCTCCCAACCCGGTGACTGCAAGAAACACAGGAAGACTCACAACAAGCAGAGACCGTATTTCGGCGAAGACGATGATGAAATTGAAGCCATTCCTCAATCTGAAACCGAACCTGAATCCGTTCCTGTTCACGTGACCGTATCCGACCCCATCAAAATAAATGAGAAAGCCGATTTTGTTGATGTTACGTACCTAGCTTTTGATGAAGCCTAA
Protein Sequence: MESHKILESPSGNKILGFGGIIRNILKTLLKSELLAILGETKQEKDESEDENDHENQALDSAELRDLNETSGDKLFRCNVCLNTYDNITTYEAHLKTHNNVEPQMVCHICGSTFKSLRKLKAHVTTHGKNSSIYPCKQCGHVFSTLAARKRHKLTHLHATDWRCELCNRKFTQHSFYIDHMLMHDLKKQMKIFICSYCGGNFDDELSLLEHEKSHSAEDVEMTLKDEREDEEEESEERQEQIEIVDNIKIEPSDEPQMIVLPMDDEDGCNGVQTEGIQIVDDMNVLDGDFTIIEVTKGDEDKYTCGECGKECEGMDAVNEHMREHSQEDYFECLHCKRVFKFKASLVQHVRKFHALSRPYSCEICNATFGNKNGLRNHRTIHLSLKYPCEECGNEFKGRSGLYLHKQRVHRGKKDYMCDYCGKLFSLKCQRDTHRRIHTGEKPYRCEVCGAGFRAQSGLYAHRKTHTNERPYKCEVCGKCLRLPYNLRLHMRTHTGEKPYECDICGRGFSQPGDCKKHRKTHNKQRPYFGEDDDEIEAIPQSETEPESVPVHVTVSDPIKINEKADFVDVTYLAFDEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -