Ccol000256.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- -
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000009.1:4021492-4024221[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 9.6e-05 0.0073 16.6 1.5 2 23 40 61 39 61 0.95 2 16 2.3e-05 0.0017 18.6 2.9 1 23 67 89 67 89 0.98 3 16 0.00059 0.046 14.1 2.8 1 23 95 117 95 117 0.97 4 16 0.0074 0.56 10.7 3.7 2 23 124 145 123 145 0.95 5 16 8e-07 6.2e-05 23.1 1.9 3 23 190 210 189 210 0.99 6 16 5.3e-06 0.00041 20.6 0.1 2 23 232 253 231 253 0.96 7 16 0.00026 0.02 15.2 4.1 3 23 262 282 260 282 0.96 8 16 0.00043 0.033 14.6 7.8 1 23 288 311 288 311 0.97 9 16 3.3e-06 0.00026 21.2 1.9 1 23 317 339 317 339 0.98 10 16 1.8e-05 0.0014 18.9 3.3 1 23 345 367 345 368 0.95 11 16 0.00045 0.034 14.5 1.2 1 23 378 400 378 400 0.98 12 16 2.5e-06 0.00019 21.6 0.1 1 23 407 429 407 429 0.98 13 16 0.0014 0.11 12.9 1.7 2 23 436 457 435 457 0.96 14 16 1.5e-07 1.1e-05 25.5 0.6 1 23 463 485 463 485 0.98 15 16 0.0013 0.098 13.1 1.9 2 23 490 511 489 511 0.96 16 16 0.00083 0.064 13.7 0.2 1 23 672 694 672 694 0.98
Sequence Information
- Coding Sequence
- ATGACAAACGATGACGAAATGGAGAAAGACAAGTGCCAAAGTTGCGATGGAAACACACCAGGGGAATCCCGGAAAAATTCTAAACGGTTAAAAAATTACACGAGAGAAGAATCCGTTCGTTGTGACACGTGTCGAAAGGAATTCAGAAACAAGCGACTCCTCAGGCGGCACGTGGGAAGTCACAGCGAAGTCAGGCCGTATTCTTGTGAGTCATGTCCACGAAAGTTCAAGAGGTCGCACGAGCTCGTCAAACATCGAAACATTCACAGAGGGATTCCTGGTCACGTGTGCGAAATCTGTGGCTATTCTTCCGTTCTCAAATCCTGTCTCAAAATTCATTTGAAGAGACACAAGGAAGAATATTCGATTAAGTGTCACATCTGCGGAAAAGGTTTCTTCACCAAGTTCGACTGTCAGGAACATCTGAACGGACATTATAACCTCAAACCGATGAATAAAGAAAATGAACCGAAAACAATATTGTGCAAAAGTTGCGGAGAGAATATTCCTGAAGATCGACTGGAAGAGCATAACTACCTCGCACATCCGGAAGCATCCCTTCAGTTGTGTAACATATGTAACAAAGTGTTTTGCAATAGGGACGATCTTCTTATTCACATGAGGTCGCATCCGAAACCACCAAAAGCGAAAAAAGGTCACAAATCGTTGGGAGAGACCAATCAGACGGAGTGGCCTTGTGCCCAGTGCGATAAAGTCTATCCGACAAATCAGCAGCTCAAATCTCATATGAAGGTTCACAAACACGAACCCTACGCTCTAGATTGCAAGATCTGTCACAAAGTTTTCAAAACGACTCACTATGCCCGGGAGCATATGAAAGTTCACACGGGTGAACGACCTTTCAAGTGTCACCTGTGCAATAGGAGCTTCATGCAAAAGCAACATCTGATAAGTCACAAAAAAAGACAGCATTTCAAAGAACATGCGTTCAAGTGTGAACAGTGCGATAAGGGTTTCCATTCTAAGACGGAGCTTCAAGTGCATATGAACTGGCACAACGGAGAGAGACCACACATGTGCGATGTCTGCGGTAAGTCGTATCCATCTAAATCGAATATGATGGGTCATAAGAGAACTCATCATCCGAGACCGGATGGAACGTTAAAGAGGTATCCGTGCGCGACTTGTCTCAGACAGTTTATGACGAAACGTTCGCTTTTGAATCACATGAGACAGCACACCGGAGAGGCTGGTCATTATGTTTGTGATATTTGCGGTAAGGCGTTATCTACTAGACAATCTTTAAAAGCTCATCGAATGATTCACACGGGCGAGAAACCCATTACGTGTGCGTTGTGTTGTAAAGCATTCAGCACCGCCAAGTATTTAAGAACACATATGAAAGCTCATGAAAAAGAAAAACCGTTTAAGTGCACCGACTGTGGGCAGTCGTTCCCTCAAAAATCTTTTCTAGCCGCTCATCAGAGACTTCATATTGAAGGTGTTAAATGCAACGACTGCGGATTAAGGTTTCCAAACGTTCATTTACTTCATACTCATTCTCAAGTCCACGGTGGGTTAGGTCAGTTAGTTCGACCCTCGCAAACTCAACAACAGACTCAGCAACCATCTCGACCACGACCGCAACCACAACCGCAACCTCAATCACAACCACAAACGCAATCTCAACAGCAATCTCAATCACAGCCACAACCACAACCTCAAACCCAGGCTCAACCTCCTCAACAAATCATTCTGACTGAGCAAAGAGTCGATGCGCCCATCGTTCAACAGCAAATAGTCCTCCATCAAAGCACTCAATCGGATCAGCCCACTATGATAGTCACCCATCAGCAAATCGTTCCACAGCCGGAACAACAGCTACTCGTCACCCACCATTCCTTAGGTCAGGACCAAATTCAGTCTTCCATGATCGTCACTCAACAAAGGCCTGTGAATCCTGAATCAGCAGCTATGTTAGTGACTCACCAGGAACAGCAACCCACGGTGATGACGATCGCCCATCATAGATCTCCAAGCGACGAACCTCCGTACCAGTGCAACCTCTGCCAAATGGAATTCGTCACTAAAGCTATTTTAAAAGCTCATCAAGCAAGTCACACGTATACGTATCCTATGTTTACCATTTAG
- Protein Sequence
- MTNDDEMEKDKCQSCDGNTPGESRKNSKRLKNYTREESVRCDTCRKEFRNKRLLRRHVGSHSEVRPYSCESCPRKFKRSHELVKHRNIHRGIPGHVCEICGYSSVLKSCLKIHLKRHKEEYSIKCHICGKGFFTKFDCQEHLNGHYNLKPMNKENEPKTILCKSCGENIPEDRLEEHNYLAHPEASLQLCNICNKVFCNRDDLLIHMRSHPKPPKAKKGHKSLGETNQTEWPCAQCDKVYPTNQQLKSHMKVHKHEPYALDCKICHKVFKTTHYAREHMKVHTGERPFKCHLCNRSFMQKQHLISHKKRQHFKEHAFKCEQCDKGFHSKTELQVHMNWHNGERPHMCDVCGKSYPSKSNMMGHKRTHHPRPDGTLKRYPCATCLRQFMTKRSLLNHMRQHTGEAGHYVCDICGKALSTRQSLKAHRMIHTGEKPITCALCCKAFSTAKYLRTHMKAHEKEKPFKCTDCGQSFPQKSFLAAHQRLHIEGVKCNDCGLRFPNVHLLHTHSQVHGGLGQLVRPSQTQQQTQQPSRPRPQPQPQPQSQPQTQSQQQSQSQPQPQPQTQAQPPQQIILTEQRVDAPIVQQQIVLHQSTQSDQPTMIVTHQQIVPQPEQQLLVTHHSLGQDQIQSSMIVTQQRPVNPESAAMLVTHQEQQPTVMTIAHHRSPSDEPPYQCNLCQMEFVTKAILKAHQASHTYTYPMFTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -