Ccol012946.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- -
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000008.1:2539764-2542672[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.4 1.1e+02 3.5 1.1 2 17 54 67 53 74 0.71 2 21 0.0028 0.21 12.0 0.5 2 23 85 107 84 107 0.94 3 21 8.1e-05 0.0062 16.8 2.6 1 23 113 135 113 135 0.97 4 21 2.1e-05 0.0016 18.7 1.2 1 23 141 163 141 163 0.98 5 21 0.01 0.77 10.3 6.7 2 23 170 191 169 192 0.95 6 21 7.1e-05 0.0054 17.0 0.6 1 23 198 220 198 220 0.96 7 21 3.4e-06 0.00026 21.2 5.6 1 23 226 248 226 248 0.98 8 21 4.8e-07 3.7e-05 23.8 4.0 1 23 333 355 333 355 0.99 9 21 2.1e-06 0.00016 21.8 3.6 1 23 361 384 361 384 0.97 10 21 0.44 34 5.1 0.5 1 23 390 412 390 412 0.75 11 21 7.7e-06 0.00059 20.1 1.6 1 23 418 440 418 440 0.98 12 21 0.00037 0.028 14.8 3.6 1 23 446 468 446 468 0.97 13 21 0.00078 0.06 13.7 0.3 1 20 474 493 474 496 0.91 14 21 0.26 20 5.8 5.2 1 23 502 524 502 525 0.95 15 21 1e-05 0.00079 19.7 4.2 1 23 627 649 627 649 0.99 16 21 1.2e-05 0.00091 19.5 0.7 1 23 655 678 655 678 0.96 17 21 0.0041 0.32 11.5 0.1 2 23 685 706 684 706 0.96 18 21 0.00012 0.0092 16.3 3.0 1 23 712 734 712 734 0.98 19 21 0.012 0.93 10.0 1.6 1 23 740 762 740 762 0.97 20 21 0.00043 0.033 14.6 4.7 1 23 768 790 768 790 0.97 21 21 0.00045 0.035 14.5 4.7 1 23 796 819 796 819 0.94
Sequence Information
- Coding Sequence
- ATGGACGAAAAGAAAAAGAAGGAAGATGCGAAGGGTCCGAAGGAGGAAATCAAATGCGTTATGAGAGATCTCTCGGGTAATTTAGTTCGATTTAAAATCGACGAGAAGAAAGGCCGACTAGCACCGTCTACAATCACCATGAAACCCACGGAAGCCATCAAGTGTCCTCTATGCGAGAAGACAATCACCCGAAGCTTTTCCATACACCTCCGAACGGATCACAAGAATCATTTCGACAAGACGAACGCAACTGTGTGCAATCTCTGCGGCAAGACGATCGCCTCTCTGCACAGTTACATACGACACGTGAAATTGGTTCACGAGAAACTGAAAGAGTTCATATGCGACACGTGCGGACGGTGTTTCGGAGAAAAGTCGAAGTTGAAAGAACATTTTAGAATACACACGATGGAGTATCCGTTCGAGTGTGACAAGTGCGGAAAAAAAGTGAGGACGACGGGATCGTTGAGATCTCATCAAAAGCTGCATTACGACAGCAAAGTCCTCAAATGCGAATATTGCGACGAGAAATTCCGTTTTAATCAGCAGCGAATTCATCACACGAGACGTCATCACACTAAAGAGAAACCGTTCGCATGCGATTTGTGCGAGAGGCGGTTCGAAGTCAAGCAAGAGCTCAAACGTCACATGTTCGTTCACACGTCCGTTAACCGATTCGAGTGTCATTATTGCGGGAGAAAATTTAAGCAAAAGCGATATTTACTTAATCACTTAAAATCTCACTCGGATTTGCTGTCTCGCGGGTGGAGGCGTTCCCGTGATAACTCAAAATGTGAAATACAAAACGTCGAAGTACTTATAGCGCTACCGGTGGAAACGGCGATTAAAGAAGAGCTACCCGAGACGGGAACAGCAGACGAAGGTACCGGGAAATCGGATAGAGTGGAAGATCGCGATGTCATCGTCGACGGAGAGCACGAACAGGACAAGAAGAAAAAGAAGAAGGGAAGGAAACCGGGTCGGAAAATCGGGTGCTTTACCTGTGACATTTGCGAGAAAATGTGCACAACGAAGAAAAACTTGGAACGTCACTTGAGAACGCACGAAAAGCGAAAATCGTTCATTTGCCACTTGTGCGGGAAAGATTTTAGAAAGAACCACGCGTTACAGAGACACGTGAGAACGGTTCACGAAAACCGTAGAGACCACATATGCGATCTGTGCGGGAAAGCTTTCTTGGAGAAAAGCGTTCGGGATGATCACAGGAGAATACACACGGGAGAGTGTCCGTATGTTTGTCAGACGTGCGGGAAGGCGTTCAAGACGATGGCTTCGCTTTGCATACACCGTAAGATACACACGGATTCGTTTCCACACGAGTGCACGTTCTGCCCGAAGAGATTCCGATTCAAGCAACAGCTCTTGGGTCATATGACCATGCACACGGGTGAGAAGAAACACTTCTGCGATATCTGCGGTAAAGGTTTCGGCGTTCGATGGGATCTGACACGTCACCGTCCGATACACAACACGACGAAGGATTTCGTGTGCGCTTTCTGCGGAATGATGTTCACGTGCAAGAAATACGTTCAGAGGCATACCAAAGCGCATCACAAAGAGGCACTAACGGAAACGAGAAGAGGAGAAACGGCAGTGCCGGCTACCATGACGACTTCAACGTCCACGACCAATTTAGATTTAAGCATGTTGGCGAGTTGCGACTTGAAAACCAGGAGAATCCTTCGGATAAAGAGATCGCCAACGATCGAGTCGTCGTCAGTTCCGATTATATTTAAATACGAGCCTTCGAGTCACGTGACTGATGGCGTGACCGAGGGGTCCGGTAGTAGGAAAGAGGAAACGGATGGCGGTAGTGACGGAACGAGGAAACTTTTGACTCCCGTTTCCCGGTCGGTGTACAAATGCGGCGAATGTGATAAGTGTTTCTCCAGTGAGAAATTAATGTCCCGTCATCGAAGATCTCATTTGGGTTTGGGTCTGTTCATATGTCACGTATGCGGGAAATCGCTCAAGAAAAAGGGAGCACTCGTACGTCACGTGAGAAACGTTCACGAGGGCCGAAGAGATTGGATTTGCGATTTGTGCGGGAAGGGATTTCCCGAGAGATCCGTTCGGGAGGATCATAGGAGGACTCACACGGGAGAGTGTCCGTATGTGTGTCACGCGTGCGGTAAAACGTTCAAGACGATGGCTTCGCTTTGCATACATAGCAAGGTACACGTGAACGATTTCCCCCATAGATGTCCGTACTGCCCGGGGAAATTCCGTTGGAAAACACAACTGAACGGTCACCTGACGACGCACACGGGCGAGAAAAAGCATAAATGCGAGGTTTGCGGGAAAGCGTTCGGAGTCAAATGCGATTTGAACAGACATAAACACGTTCACTCGGACGAGAAACCGTTTAGCTGTTCATTGTGCGGTTGCAATTTCTCGCAGAAACGATATTTGAAAAAACACGAGAAAGCCAGGCATCGAAACGAGGTTCCGGTTTATGAGAATTGA
- Protein Sequence
- MDEKKKKEDAKGPKEEIKCVMRDLSGNLVRFKIDEKKGRLAPSTITMKPTEAIKCPLCEKTITRSFSIHLRTDHKNHFDKTNATVCNLCGKTIASLHSYIRHVKLVHEKLKEFICDTCGRCFGEKSKLKEHFRIHTMEYPFECDKCGKKVRTTGSLRSHQKLHYDSKVLKCEYCDEKFRFNQQRIHHTRRHHTKEKPFACDLCERRFEVKQELKRHMFVHTSVNRFECHYCGRKFKQKRYLLNHLKSHSDLLSRGWRRSRDNSKCEIQNVEVLIALPVETAIKEELPETGTADEGTGKSDRVEDRDVIVDGEHEQDKKKKKKGRKPGRKIGCFTCDICEKMCTTKKNLERHLRTHEKRKSFICHLCGKDFRKNHALQRHVRTVHENRRDHICDLCGKAFLEKSVRDDHRRIHTGECPYVCQTCGKAFKTMASLCIHRKIHTDSFPHECTFCPKRFRFKQQLLGHMTMHTGEKKHFCDICGKGFGVRWDLTRHRPIHNTTKDFVCAFCGMMFTCKKYVQRHTKAHHKEALTETRRGETAVPATMTTSTSTTNLDLSMLASCDLKTRRILRIKRSPTIESSSVPIIFKYEPSSHVTDGVTEGSGSRKEETDGGSDGTRKLLTPVSRSVYKCGECDKCFSSEKLMSRHRRSHLGLGLFICHVCGKSLKKKGALVRHVRNVHEGRRDWICDLCGKGFPERSVREDHRRTHTGECPYVCHACGKTFKTMASLCIHSKVHVNDFPHRCPYCPGKFRWKTQLNGHLTTHTGEKKHKCEVCGKAFGVKCDLNRHKHVHSDEKPFSCSLCGCNFSQKRYLKKHEKARHRNEVPVYEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -