Ccol000828.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- -
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000009.1:4016559-4019292[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 8.5 6.5e+02 1.0 0.5 1 16 26 40 26 42 0.75 2 21 8.2e-06 0.00063 20.0 0.4 1 23 105 127 105 127 0.98 3 21 7.9e-05 0.006 16.9 2.2 1 23 133 155 133 155 0.98 4 21 0.001 0.079 13.4 5.0 1 23 161 183 161 183 0.97 5 21 0.0035 0.27 11.7 0.1 2 23 190 211 189 211 0.97 6 21 1.5e-05 0.0012 19.1 3.3 1 23 217 240 217 240 0.96 7 21 2.5e-05 0.0019 18.4 4.3 1 23 250 272 250 272 0.98 8 21 8.8e-05 0.0068 16.7 1.2 1 23 278 300 278 300 0.97 9 21 5e-06 0.00038 20.7 0.1 2 23 307 328 306 328 0.97 10 21 2.4e-06 0.00018 21.7 1.1 1 23 334 356 334 356 0.97 11 21 0.00038 0.029 14.7 1.6 1 23 362 384 362 384 0.99 12 21 0.067 5.1 7.7 2.6 2 23 503 524 502 524 0.97 13 21 0.00011 0.0085 16.4 2.3 1 23 530 552 530 552 0.98 14 21 3.4e-05 0.0026 18.0 1.2 2 23 560 581 559 581 0.97 15 21 0.002 0.15 12.5 2.8 1 23 587 609 587 609 0.97 16 21 0.0034 0.26 11.7 2.5 1 23 615 638 615 638 0.94 17 21 2.8e-05 0.0022 18.3 1.9 1 23 646 668 646 668 0.97 18 21 0.011 0.82 10.2 1.5 1 23 674 696 674 696 0.94 19 21 4.4e-05 0.0034 17.7 3.1 1 23 702 724 702 724 0.98 20 21 2e-06 0.00015 21.9 1.5 1 23 730 752 730 752 0.97 21 21 0.026 2 9.0 4.0 1 23 758 780 758 780 0.98
Sequence Information
- Coding Sequence
- ATGGATGAAGAGTACATACCACTGGATGAAAAACCAAGGAAAAAGAAATTCAAAGCATCGAAAAAGGTTCCAGGTTTCGAATGTGACGAATGCAGGGGAAAATTCTTCCAGGCGCAACTGAAGAGAGTTCGAACGAAAGACACCATGGGATCGAGCGTGAGACTGATGTGTGACACGTGTATCGAGACGAGACTCGACGCAGACGAAGACGTGACGATCGAAACCTGGGATGGAAAGAGTAAAGACGGTCGGAAGAGGAGGAGGAGGGACAAGAAGTCGGGGAAACTATTTCCGGAGGAAACCCTGATGGAATTTAAATGCGAAATATGTTCGGAGAAATTCAGCGTGGCCGCCCACCTCGAAAAGCACGTCATGGTCCATTCTGTTCCAAAGCCTTACTCGTGTGATATCTGTAAGAGGAAGTTTAAAAGACTTCCCTCCATGGTCAATCACAGGAGAAAACATTTCGGGAATCTGGAATTTTGTTGCATGATGTGTAATTACAGTTCCGCACATAAGTCTTCCTTAGAGATTCATATGAAGCGTCACGCAAAGGATTACAAGGTGAAATGCGAAACATGTGAAAAAGGTTTCTTCTCGATAAACGAACTGATCGATCATTATAACGTTCACACGGGTGCTAGACCGTATCAGTGCGATTTGTGCGACAAATCGTATCCGTACAAACACAACCTGACGGCTCATAAGAAATATCAACATCCTTCGGAACCGATCGAGAAGAAACTCCATCAATGCGAAACCTGCGGAAAGATTTTCTCGTTCAAGAAATCGCTCACGCTGCACAGGAAGTCGCACACAGGTGAAAACGTGTTCATATGCGACATTTGTGGAAAGTCACTCACCAACAGGGACCATCTCATCTTCCATCGTCGTATTCATACCGGAGAGAAACCATCCGTATGCGATGTGTGTGGGAAGGGATTCGCCAAACCTGGAAACCTGACTCTTCACAAACGCGTTCACTCCGGCGAAAAACCCTACGCGTGCGAAATTTGTGGGAAATGCTTCTCCCAAGGATCGACTCTAGTCATTCACCGTCGTTACCACACGGGTCAGAGACCCTATTCGTGCGAGATCTGCAAGAAGGCATTTGTGTGCCGGGGTCTTCTTACGACTCATGCCCGAACCCACAGGAAACACTTGTTACAACGAGAAGAAGACATTCAAAGTGGAACTTTGAATGAATGGAGAGGGAGTCCCTTCATTGACGAGTCATTAAAAGTGTACTTGAATACAATCAAACCCGTACCAAAAGATTTTGGTGCCAATGAGGGACGGAGCAGTTCAGAGGTAACAGGAACGGGAGCAAATGAAATAATCGTAAGTGATATTGAAATCAAAACGGAAATCGAAGAGGAGATAGTCATTGATGAAATTGAAACAGAAGACCTAAAACCGTTCATTTGCTCCGTCGAAGATTGTTTTTTCCTGTCGAAAGACGATAAAGAAATGAGTATTCATATGAGTGAGCAGCACAACGACAATAAGTGCATGACTTGTATGAGAGAATTCAAGAGTTTCAAAACGTTAGAACGTCACCTAGAGAAACACACGAGTGATCGTCCGTTCAAGTGCGACACATGTCCAAAGTCGTTCAAATCAAAACTCCAGGTTGAAGACCACAAGAAACGTCACAAGAACATGACTAGAAATTTGAAATGCGACGAGTGCGGATACACAACGGCTTTTAAAACTGATCTGTTCAATCACATGAAGAAACACTGCCACGATTTTCCGTTCACGTGCACCGTGTGCAATAAAGGATTCTTCAACAAGACCTTTTTCCTCGATCATATTAATTTTCACAACGGGGTCAGACCCTTCGCGTGCAGTGTCTGCGGGAAAAGGTTCTTCTCCAGAATATACCTCGATTCGCATAAAAAACACATCCACAGTCAACCGGATGGCTCAGTATATAAATGCGACACTTGTTCCAAAACCTTTGACCGGAAACGAGCTTACCAACTTCATATGAGTGGTCACAAAGCTAACAAACTATTCCTTTGCGATATTTGCGGAAAGGGCCTGACAACTCTCAATCACTTAAAATTTCACAGGCAGATACACACTGGAGAGAAACCGCACGTGTGCGACGTTTGCGGTAAAGATTTCGTCAAACAATGCAACTTAGTTCTTCACAAGAGAACGCACACCGGTGAGAGACCGCACGTGTGCGATGTTTGCAACAAAGCGTTCACCCAACGTTCTAGTCTAGTCATACACCGAAGACAGCACACCGGTGAGAAGCCCTACGAATGCGGATACTGCCTTAAAAAATTTTCGTGCAAAACACTGCTGAATGGTCACTACAGATCTCATGTATTCGCCGGAGATTTACCACGATTTCCGACTAATCCACCAAAGCGTTATCAGCCACCTTAA
- Protein Sequence
- MDEEYIPLDEKPRKKKFKASKKVPGFECDECRGKFFQAQLKRVRTKDTMGSSVRLMCDTCIETRLDADEDVTIETWDGKSKDGRKRRRRDKKSGKLFPEETLMEFKCEICSEKFSVAAHLEKHVMVHSVPKPYSCDICKRKFKRLPSMVNHRRKHFGNLEFCCMMCNYSSAHKSSLEIHMKRHAKDYKVKCETCEKGFFSINELIDHYNVHTGARPYQCDLCDKSYPYKHNLTAHKKYQHPSEPIEKKLHQCETCGKIFSFKKSLTLHRKSHTGENVFICDICGKSLTNRDHLIFHRRIHTGEKPSVCDVCGKGFAKPGNLTLHKRVHSGEKPYACEICGKCFSQGSTLVIHRRYHTGQRPYSCEICKKAFVCRGLLTTHARTHRKHLLQREEDIQSGTLNEWRGSPFIDESLKVYLNTIKPVPKDFGANEGRSSSEVTGTGANEIIVSDIEIKTEIEEEIVIDEIETEDLKPFICSVEDCFFLSKDDKEMSIHMSEQHNDNKCMTCMREFKSFKTLERHLEKHTSDRPFKCDTCPKSFKSKLQVEDHKKRHKNMTRNLKCDECGYTTAFKTDLFNHMKKHCHDFPFTCTVCNKGFFNKTFFLDHINFHNGVRPFACSVCGKRFFSRIYLDSHKKHIHSQPDGSVYKCDTCSKTFDRKRAYQLHMSGHKANKLFLCDICGKGLTTLNHLKFHRQIHTGEKPHVCDVCGKDFVKQCNLVLHKRTHTGERPHVCDVCNKAFTQRSSLVIHRRQHTGEKPYECGYCLKKFSCKTLLNGHYRSHVFAGDLPRFPTNPPKRYQPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -