Ccol012802.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- -
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000008.1:2533954-2536976[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00027 0.021 15.2 1.6 2 23 71 93 70 93 0.96 2 20 2.3e-06 0.00018 21.7 0.9 2 23 100 121 100 121 0.98 3 20 1.4e-06 0.00011 22.4 3.4 1 23 127 149 127 149 0.99 4 20 0.015 1.1 9.7 2.5 3 23 157 177 155 177 0.91 5 20 0.00081 0.062 13.7 3.1 1 19 183 201 183 205 0.96 6 20 0.0021 0.16 12.4 6.7 1 23 211 233 211 234 0.94 7 20 0.001 0.078 13.4 0.6 1 23 286 308 286 308 0.98 8 20 0.002 0.15 12.4 1.3 1 23 327 349 327 349 0.98 9 20 5.9e-05 0.0045 17.3 0.3 1 23 356 379 356 379 0.97 10 20 0.00098 0.075 13.4 0.1 2 23 386 407 385 407 0.97 11 20 1.5e-08 1.2e-06 28.5 0.1 1 23 413 435 413 435 0.98 12 20 4.9e-06 0.00037 20.7 3.8 2 23 442 463 442 463 0.97 13 20 5.9e-05 0.0045 17.3 0.6 1 23 469 491 469 491 0.97 14 20 0.051 3.9 8.0 3.1 1 23 497 520 497 520 0.97 15 20 0.0014 0.11 12.9 1.9 2 23 576 597 575 597 0.97 16 20 0.013 1 9.9 3.2 2 23 604 626 603 626 0.94 17 20 0.00023 0.017 15.4 1.6 1 23 632 654 632 654 0.98 18 20 3.4e-05 0.0026 18.0 4.5 1 23 660 682 660 682 0.98 19 20 0.0013 0.1 13.0 6.3 1 23 688 710 688 710 0.97 20 20 0.00019 0.015 15.7 1.9 1 23 716 738 716 738 0.97
Sequence Information
- Coding Sequence
- ATGGTTGTCGAAAACCTGGACTCAACTGCTATTGAGGAGGTTTTAAATTTTGATTCGGAAAAGAGGGTTGATAAGAGGAGGAAAAGGAAAAGGGGGAACATGGCGGAGGAAAAGTCAGGCGAGGTTATCGCTAACCTCGACGAAAAGGACATTTTGGAAATACTGAGAGTGAGACTGGACGAGACCGAAGGGAAATCCGAAAGCTCTCTTATATGTCACGTGTGCGCGAAAGAGTTCAGGAAGGTTCATCTCCTTCAGGCTCACATCCGTAGGGTGCACGAAAGGATCGTCGTGGCCAAATGCGAGGTGTGCGGTCGTGATTTCCGCGACACGTCCAACTACACGAGTCACATGAAGATACACTCGGAGGTGAAGTCGTACGTTTGCCAACATTGCGGGAAGTGTTTCGCACAGGTACAGGGTCTAAAGATCCATCAGAGAACGCACACCCTCGACTTCCCGCACCTGTGCATGGTGTGCGGGAGGAGGTATCGGACTCGTCAGCATTTGGATCAGCACGCATCCGCACACAGTGACGAGAGACCCTTCGAGTGCTCGTCCTGCGGGAAGTTCTTCAAGACTAAACTCCACCTGAAATCTCACAGCTGGATACACAGCGACAAGTTTCGCTATTACTGTTCGTATTGTCAGAAAGGTTTCAACAATTCGAGTCATCTCAAATTCCACGTGCAGAATCACCACGTGAACGTGAGTCTCATCGATCCGAAGATAACGGCGGAACTACCAACAGTAACAGTGCGAACGGAAGAACAGGAAGTGATCGGATTATTCACAACAAAAAGGGGTAACCATCCCGAAGATATCGTTAAAGTCAAAAAGAGGTACGAGTACAGGTTCGAGTGTGAAATTTGCGGGAAGTTGTTAAAGAAGAAAGTATCATGGCGGAAACACGTATCGAAACACGTGTGTTCGACTGGAAATGAGTCGAAAAGTATTTCGTCAGACGGAGGGTGTGTTTACCGTTGCGATAAGTGCGGTAAGAATTTAGGAAGTCGGGAAACGTTCGGAAGACATCGAAAACTTCACGAAGAGCCGGGGAAACCGTTTCCATGTGGGGTTTGCGAGAGAAAATTCTCGAATTCGGTTCGGTTGCGTCGTCACGTGGAAACGGTTCACGAGAAATTGAAGAAATGGGTTTGCGAGGTGTGCGGTAAAGCGTTCGGAGAGAAAAGAGTCCTAGATAACCACAGACGGATACACACAGGCGAGAAACCGTTCGTTTGTGAGATTTGTGGGAAATCGTTTTCGGATCCGTCGTCATTAGCCGCACACAGGAAAAGACATACGAAAGACTACACCAATGTGTGTCACGTGTGTCACAAAGCGTTTCCTAAAAGGTCTAATTTGGAAAGACACTTGAAGTACCACTCGGGAGAGAAACAATTTCCGTGCGATATTTGCCTGAAGAAATTTCGGGACAAACGGGATGTGACAAGGCACAGAATCGTTCATGAGGATGCTAAGATGTACCCGTGTCAACTGTGCAAGTCACAGTTCAAAGCTTTGAGAAGTTTGAGGAAACACAAGAAAAGGTTTCACGATGAAGGCTTTTCCTTGCCGGGAGGGTCGGATCCATCCTTCGGCGACAAATATAATCTAAAAGACGAAGATAATCGTCTCGGGAAAAAAGGAAACGGAAGTGGAAGGAAAAAATGGGACGTCAAGCCCTCGCCAGCGGTTAAAAGCCAGTCGAAAGGCGGTATGACGTGTACCCTGTGCAATAAGAGACTCGTCACGAAGCAGGGATATTCGAGACACATGAAAAATCATTTCGGTGATCGTTCTCAAACGTGTCACATATGCGGGAAGTGTTTCCTCGAAAAGAAAGACATATCCCGTCACGTTCGCGAAGTTCACGACAAAATAAAAAAATTCAGTTGCGATTTGTGCGGGAGATCGTTCGCGACGAAGAACACCCGAAACGACCACAGAACGACTCACACGGGAGAGCGAACCTACGTGTGTCACATATGCGGGAAAACGTTCAAAACGGCCAATTGCGTTTACATACATCGAAGATCTCACACGGACTACGCTCCGCACAAATGCGAGTCCTGTCACAAGTCCTTCCGAACGAGGCAAAGACTTAACAATCACAGGGCCATACACACGGGCGAAAAACCGTTCATGTGTCAGGTGTGCGGGAAACGGTTCATAACCAAGTCCCAGGTGAATTGCCACATGGAAATTCACTGCGAGACCTCATCTGTGTCCCTTCTGCGGAATCAGTTACAACGTGAGGAAGTACCTGAGGGTTCATATAAAGACTCATCACTCTGGGGCGGCCACACAGCCTACTTGAAGCACTCCTCATCCAGAACTGTGACACTTTATAATGAGTCACAATTAAACAAATAA
- Protein Sequence
- MVVENLDSTAIEEVLNFDSEKRVDKRRKRKRGNMAEEKSGEVIANLDEKDILEILRVRLDETEGKSESSLICHVCAKEFRKVHLLQAHIRRVHERIVVAKCEVCGRDFRDTSNYTSHMKIHSEVKSYVCQHCGKCFAQVQGLKIHQRTHTLDFPHLCMVCGRRYRTRQHLDQHASAHSDERPFECSSCGKFFKTKLHLKSHSWIHSDKFRYYCSYCQKGFNNSSHLKFHVQNHHVNVSLIDPKITAELPTVTVRTEEQEVIGLFTTKRGNHPEDIVKVKKRYEYRFECEICGKLLKKKVSWRKHVSKHVCSTGNESKSISSDGGCVYRCDKCGKNLGSRETFGRHRKLHEEPGKPFPCGVCERKFSNSVRLRRHVETVHEKLKKWVCEVCGKAFGEKRVLDNHRRIHTGEKPFVCEICGKSFSDPSSLAAHRKRHTKDYTNVCHVCHKAFPKRSNLERHLKYHSGEKQFPCDICLKKFRDKRDVTRHRIVHEDAKMYPCQLCKSQFKALRSLRKHKKRFHDEGFSLPGGSDPSFGDKYNLKDEDNRLGKKGNGSGRKKWDVKPSPAVKSQSKGGMTCTLCNKRLVTKQGYSRHMKNHFGDRSQTCHICGKCFLEKKDISRHVREVHDKIKKFSCDLCGRSFATKNTRNDHRTTHTGERTYVCHICGKTFKTANCVYIHRRSHTDYAPHKCESCHKSFRTRQRLNNHRAIHTGEKPFMCQVCGKRFITKSQVNCHMEIHCETSSVSLLRNQLQREEVPEGSYKDSSLWGGHTAYLKHSSSRTVTLYNESQLNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -