Ccol000382.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Columbicola columbae
Gene Symbol
-
Assembly
GCA_016920875.1
Location
JADMLL010000009.1:4013861-4016372[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.0005 0.039 14.3 0.3 1 23 12 34 12 34 0.97
2 21 0.007 0.54 10.7 1.4 2 23 41 62 40 62 0.97
3 21 0.0046 0.35 11.3 0.2 2 23 69 91 68 91 0.95
4 21 7.7e-06 0.00059 20.1 1.3 1 23 101 123 101 123 0.95
5 21 6.1e-06 0.00046 20.4 2.2 1 23 129 151 129 151 0.97
6 21 1.6e-06 0.00012 22.2 1.8 1 23 157 179 157 179 0.98
7 21 9.9e-05 0.0076 16.6 0.4 1 23 185 207 185 207 0.97
8 21 9.5e-05 0.0073 16.6 0.5 2 23 214 235 213 235 0.97
9 21 6.1e-06 0.00047 20.4 2.2 1 23 263 285 263 285 0.96
10 21 2.2e-07 1.7e-05 24.9 0.4 2 23 292 313 292 313 0.97
11 21 0.00069 0.053 13.9 4.5 1 21 319 339 319 341 0.94
12 21 1.1 84 3.8 6.7 1 23 403 425 403 425 0.94
13 21 2.8e-06 0.00021 21.4 0.9 1 23 431 453 431 453 0.99
14 21 0.018 1.4 9.4 1.8 1 23 459 481 459 481 0.97
15 21 0.00021 0.016 15.6 0.1 2 23 488 509 487 509 0.96
16 21 6.3e-06 0.00048 20.3 1.3 1 23 515 538 515 538 0.93
17 21 7.1e-06 0.00054 20.2 2.1 1 23 548 570 548 570 0.98
18 21 1e-06 8e-05 22.8 0.7 1 23 576 598 576 598 0.98
19 21 5.1e-08 3.9e-06 26.9 2.4 1 23 604 626 604 626 0.97
20 21 2.8e-06 0.00021 21.5 0.4 3 23 634 654 632 654 0.97
21 21 4.6e-05 0.0035 17.6 1.4 1 23 660 682 660 682 0.97

Sequence Information

Coding Sequence
ATGAAAACGCACAAAGACGATCAGGAAAGAGATCACATATGCGATGTATGCGGTCAGGGATTCGTTTTAAAGACGAACTTAGATTTGCACCTAATGAGACACCGCCAGGCATTCAAGGTCAGATGCAGTTTCTGTGGCAAAGGTTTCTACTGCGAGTCAACACTCAGAGAACATGTAAACATTCACACGGGTGAACGACCTAATCAGTGCGAACTTTGCGGAATGACGTTCGGTTATAAAAACGTTCTCGAAGCTCATAAACTCTCGTCACATCCGGAATCGTTGGACCCGTCTAAGGTTCATAAATGTCCTATGTGTCCGAAGGTTTTTCCCACGAGGAAATCGCTTCAGATTCATGAGAATTTCCATACCTTGAAGAACAAGTTCGTTTGCAAGACATGTAATAAAAGTTACGCGAGTAAAAAATTGCTCAAACGTCACCAAGTCAGTCACTCCATGGTGAGACCATTTTCTTGCGATATTTGCGGGAAATCTTTTAAGAGAGCCTTCGAAGTCAAAACTCACAAGAAAACCCACGTGTCTGAAAAGAAACACGTGTGCGAGATTTGCGGTTATGCGGCGTCTCAAAAATCCTACCTCGATTTACATATCAAGAGACACAAACAAGACTTCAAAGTCGTGTGTAATGAATGCGGAAAAGGTTTCTTCTCGGACTTCAAACTAAAGGAGCACATGTACACCCACACCGGACAGAAACCTTTTCAGTACGTTCCTTCACAAGAAATCGATGCTGTTGCACATGAACGTTCACACTGGTCAGGAGCGTATTTGTGCGACGTTTGTGGGAAATCTCTCACGAGCAAGGAACACCTCAAACTTCACAGACGGAGTCACTCGGGTGAGAAACCGAACGTGTGCGCCGTTTGCGGGAAAACGTTCAACACGAGAGACAATTTGAAGGTTCACGAGAGAACGCACACGGGAGAAAGACCTTTTGTCTGCGAGTGCTGCGGAAAGTCGTTCACTCAGCGAACGTCTCTAGTCGTTCATATGCGGTGTCACACGGGTCAGAGACCATTCGCTTGCGTGCTTTGCGGGCGGAGGGAAAGTCTGACTATGAATAAAACGATGAGTGGCTTTATCAACCAGTGGACACTTCCGGTTGATGAGAAAACCGTTAAAATCGAATCTGAGAAGACCGTTACAAAATGCTTGATTTCAGCTAGCGATGTTGAGAATAAGAACTTTCATTGTGAGTGCTGCGGAAAGACTTTCGGGGTGAGAACTCACTTCGACAAGCACGCCAAGGAGCACGGAGTCAGCAAACCCTACAAGTGTGACGTCTGCGACAAAGCTTTCAAAAGATATCCGTCCATGGAGGTGCACCGGAGGCGACATTTCGGTGATTGGCGTTTCGCGTGTCATTTATGCGATTTCAAGGGACCGTCGAGGTCGTCCTTAGACTACCATCTAAAACGCCACACGGGAGCCTATGCCATCCGATGTCAGATTTGCAATAAAGGTTTCGTTTCCGTATCGGAGTTAAAAGGTCACGAAAACGTTCACACGGGCTTTCGACCTTATCAGTGTTCCCTCTGCGAGAAATCCTACCGAAACAAGCATAATTTAAACGTTCACGTCGAGGAAATCCATTCGTGCAAACCGGAGGAAAGGAAACGACACCAATGCGAAGACTGCGGGAAGTTGTTTGCTCAAAAAAAGTCGTTGGAACTACACCGGAAGTCGCATACCGGAGAAAACGTTTACATTTGTGATATCTGCGGAAAGTCTTTAACCAATTTAGAACACCTTCGAATTCATCGGAGGATTCACACAGGCGAGAAACCGTTCGCGTGTCACGTGTGCGGGAAATCGTTTTCGAATTCGAAAAACTTGACCCTTCACCGACGTGTTCATACTGGTGAGAGGCCCTACGGTTGCCAGGTATGCGGGAAACGTTTCTCTCAACGTTCGGCTCTTGTGACACACGAACGGAGTCACACGAAGGAAAAACCATTCGATTGTCATCTTTGTCAGGAGTCGTTCGCTTCCAAAGCTCTTTTGACTGTTCATTCGAAAACTCATTGCCTTCCTTTCGGCCTCGAACGTTCGATTCGGGTTACAACTTCCGGTTCTCATTATTCCTATTAA
Protein Sequence
MKTHKDDQERDHICDVCGQGFVLKTNLDLHLMRHRQAFKVRCSFCGKGFYCESTLREHVNIHTGERPNQCELCGMTFGYKNVLEAHKLSSHPESLDPSKVHKCPMCPKVFPTRKSLQIHENFHTLKNKFVCKTCNKSYASKKLLKRHQVSHSMVRPFSCDICGKSFKRAFEVKTHKKTHVSEKKHVCEICGYAASQKSYLDLHIKRHKQDFKVVCNECGKGFFSDFKLKEHMYTHTGQKPFQYVPSQEIDAVAHERSHWSGAYLCDVCGKSLTSKEHLKLHRRSHSGEKPNVCAVCGKTFNTRDNLKVHERTHTGERPFVCECCGKSFTQRTSLVVHMRCHTGQRPFACVLCGRRESLTMNKTMSGFINQWTLPVDEKTVKIESEKTVTKCLISASDVENKNFHCECCGKTFGVRTHFDKHAKEHGVSKPYKCDVCDKAFKRYPSMEVHRRRHFGDWRFACHLCDFKGPSRSSLDYHLKRHTGAYAIRCQICNKGFVSVSELKGHENVHTGFRPYQCSLCEKSYRNKHNLNVHVEEIHSCKPEERKRHQCEDCGKLFAQKKSLELHRKSHTGENVYICDICGKSLTNLEHLRIHRRIHTGEKPFACHVCGKSFSNSKNLTLHRRVHTGERPYGCQVCGKRFSQRSALVTHERSHTKEKPFDCHLCQESFASKALLTVHSKTHCLPFGLERSIRVTTSGSHYSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-