Ccol000882.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- -
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000009.1:3993994-3997877[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.00046 0.035 14.5 2.7 1 23 28 50 28 50 0.94 2 31 3.6e-06 0.00028 21.1 3.7 1 23 56 78 56 78 0.97 3 31 0.00069 0.053 13.9 0.4 1 23 84 106 84 106 0.99 4 31 2.1e-05 0.0016 18.7 1.9 1 23 140 162 140 162 0.97 5 31 2.1e-05 0.0016 18.7 4.8 1 23 171 193 171 193 0.97 6 31 4.4e-05 0.0034 17.7 0.2 1 23 199 221 199 221 0.98 7 31 6.5e-06 0.0005 20.3 0.9 2 23 228 249 227 249 0.97 8 31 2.3e-06 0.00017 21.7 2.9 1 23 255 277 255 277 0.97 9 31 1.6e-06 0.00012 22.2 1.4 1 23 283 305 283 306 0.96 10 31 0.013 0.99 9.9 0.1 2 23 388 409 387 409 0.95 11 31 0.0001 0.008 16.5 1.4 1 23 412 435 412 435 0.97 12 31 0.00022 0.017 15.5 6.1 2 23 445 466 444 466 0.97 13 31 0.17 13 6.4 3.5 1 23 472 494 472 494 0.98 14 31 0.0027 0.21 12.1 0.3 1 23 500 523 500 523 0.96 15 31 0.0043 0.33 11.4 0.8 1 23 527 549 527 549 0.98 16 31 3.9e-06 0.0003 21.0 2.6 1 23 559 581 559 581 0.98 17 31 1.5e-06 0.00011 22.3 1.1 1 23 588 610 588 610 0.98 18 31 8e-06 0.00062 20.0 0.1 2 23 617 638 616 638 0.97 19 31 2.8e-06 0.00021 21.5 0.7 1 23 644 666 644 666 0.97 20 31 6.4e-06 0.00049 20.3 0.6 1 23 672 694 672 694 0.99 21 31 3.8 2.9e+02 2.1 0.1 2 19 793 809 792 812 0.86 22 31 0.0005 0.039 14.3 1.6 2 23 821 843 820 843 0.91 23 31 0.066 5.1 7.7 5.6 1 23 846 869 846 869 0.91 24 31 0.0071 0.54 10.7 0.7 3 23 879 900 878 900 0.95 25 31 0.00015 0.012 16.0 1.2 2 23 909 930 908 930 0.97 26 31 0.0012 0.096 13.1 1.0 1 23 936 959 936 959 0.93 27 31 5.6e-06 0.00043 20.5 1.8 1 23 963 985 963 985 0.98 28 31 2.5e-06 0.00019 21.6 1.8 2 23 997 1018 996 1018 0.97 29 31 4.6e-05 0.0035 17.6 0.3 1 23 1025 1047 1025 1047 0.97 30 31 2.6e-06 0.0002 21.5 1.2 1 23 1053 1075 1053 1075 0.98 31 31 6.4e-07 4.9e-05 23.5 5.2 1 23 1081 1103 1081 1103 0.98
Sequence Information
- Coding Sequence
- ATGGTGATGAATGTTGGATGCGGAAGAGGAAGGAAGTCAAGTGAGAATGTTATTGAAATGGAGTCAGCATCCTCTTCCAAATACACGTGCAAAGTTTGTTTTAAACAGTTCTCAACCGCCTTCAAGTTAAATCGTCATTCGGTGTCTCATCTCAAAGACAGACCTCACAAGTGTAACATTTGCGAGAAGAGTTTTAAAAGGCCTCAAGAACTCAAAAGTCACAGGAAGTTACACACGGAAGAACGTCGCTATAAATGCGAGTTCTGTCCTGCAACCTTTTACTTACCCTCCCGATTGAGGGTACACGTGAACCGACACACAGCCACCTACCGATTCAATTGCGAAACGTGTAAGAAAGGCTTTCACACAACGACCGAGTTCAAGTGTCATAATAACGTTCATCATGGGACCGGTGGACACGTGTGCGAGACGTGTGGGAAGATATTCCCACACAGAGCGGCTCTCAACAAACATTCACAGACCCACGACCCCGATTTCATAGCCGAGAAACACAAATGTGACCTCTGCGACAAAACGTTCGCTCACAAATCTTCTTTGAACATCCACTCCAAGTCTCACGCCGTCGGAACCAACTACATCTGTGACATCTGCGGTCAAAAGCTCAAAAGCAAAGCCACTCTATCGTGGCACTTGATGACTCATTCGGGTGAGAAGCCGAGCGAATGCGAAACTTGCGGGAAGCGATTCGCAAAGAAAACGAATCTCATGGCACATAAATTGACTCACACGGGACAAAAGCTTCACATGTGTGACAAATGTGGACGAAGCTTTTCTCAGAGATCGTCTTTGACCATTCACGAACGATACCACACGGGCTCGCGGCCATACGTTTGCGATAATTGCGGAAAAGGTTTTGTGTCAAGGTCTCAAATGAACTCACACATCAAGAGTCATCATCAGACATTAGAGACAACCGTGACCCCATCAAAGTCAAAAGTTAATCGATATGAGTTTAACCACCCCGACTGGAACGATTTGTTGGGATCCGGAAAAGAAATCATCAAAGACGAATCAAAACAGATTTTACCGACCGTTCGCGAGACGGTTGAACGCTTCGTTCTAACGAATTTAGACCAAAAAACCGGGAAGAAAGAAAAGAGGAAAGGGAAGAGACAAGAGAAACGGAAATCGGATCAAGTGACATGCAACGCTTGTAATCTGACATTCGAGGACGAGGAACTACTCGACAAGCATATGGCCTTTCACAAAGTGTTCCGTTGCACGATTTGTAACAAGGACTACCAACCTCGGGAAAATTACAATCGTCACATGAAAAACGTTCACAACGAAGGAGGTTCCTTACCTCGAGTCACCTGTCACGTCTGTCACAAAACTCTAAAGAATAAATATTTTTTGAAGACTCACATGAAGATCCACGCACCGGATACTGATTATAAGTGTCCCCACTGCGAGTACAAGAACAATAATTTGTTCTACATGAAGATACACATCAACCGACACACGAAACAGCCGTCATATCAGTGCGAGATCTGCGGGGAGAACTTCTACGAGAAGACTATCCTTCAGACTCACGTTCAAGTCAAACACGGACGAGGATTCGAATGCGAAGTTTGTGGAAGAAGCTACGGAACGAAGCAAAGACAACGCGAACACGAGAAGACTCATGATCCGAACTACGTTCACGTGAACAAACATCAGTGCGAGGAATGCGGTCAGACATATAAATATCGAGCCCAGTTGAAGAAGCATATACTCAAGCATAGAGGACTCGATGTCAAGTATAGTTGCTCCGTTTGCGGGAAGGTAGTCACGACGAAGAAATCCTTCACGAATCACATGAAGATACACACGGGAGAGAAGTCAAGCGTTTGCGATATATGTGGGAAAGCGTTCACGGTGGAAAAGTACCTGGTCGTGCACAGGCGAACGCATACCGGAGAGAAACCCTACTCGTGTCAGATTTGCGGGAAGAGTTTCACCCAGAGAGTGTCTTTGGTGATTCATAATCGGTACCACACCGGTGAGAGACCTTATAGGTGCCAGGTGTGTAACAGAGGTTTCGTTACGAATACTCTTCTGTCTGCTCATCTCAAGACTCACGTTTCGCAACAGAAAAGAAACAAATCGACACTAGACGCAGCCGTGCTTAGGAAAAAATTATTAAGCATCGCACGAACGAATCGATTGAAACGGGTAGGAAAAGTAAAAAAGAGGAAACAGGAAGAGAAACTACCGCAGAAGAAGTTGAAGACTGGAGACGTGGAATCGGACAACATGTCGTATTCGTACTTCGAACCGGAAATCAAGATCGAATCTGGGACTACGAATGCGGAAAACGCGACCAACAATGGTCAGTCATCTCAGGATTTCATGTCGGATCAGATGGCGACGGTCAGGTGCACGCTCTGCGGGGAAATGGTTTCAGCGGCTAATTTCGACAAGCATAAGTTCGTCGAGGAACTTTATTTAGCTGCGATGAAGTGTCGCATATGTAATATATCCTTCAAGAAGAAATCCACGTTTCGAATCCATATTTACGACCAGCATAAGATACATCACTGCAAGCTGTGTCCGGAAGTGTTTTCGAAACGGCAGCACTATCGAATGCATAAAGAACTCGTGCACGATTTGAAAAAGAAACCGAGAGTTTTGTGCGATTTGTGCAACAGGTCGTTCGCGAGCAAGCAGATATTGAAGAGACACAGGAATGAAGTTCATTTCGGGCAGCGCGAACCAGAAACAAAGTGTCCACAGTGCGATTACAAATCATCAAACCGATCCAACATGAAAGTCCACATAGACAAACACAACAACACGCCAGCTTTCGTCTGCGATCTTTGCGGAAAAGGTTGCTTCACGAAAACCTCTCTAAACGACCACACGGCAAACGCACACGGGCAAGGATTCAAGTGCGAAGTCTGCGGGAAGTTCTACAAAAACGAAAGCAGTCTCAAGACTCATTCGAAAATCCACGTGCCGGGTTTCGATCCGGCGACCTTGAAACAACAGTGCGAGGAATGCGGAGAGATATTCAATCACAAAAGCTCACTCAACAAACATCTGCTCAAGCATAGAGGCTTGGACAAAACGTTCGATTGCGACGTCTGCGGTAAAAAGCTGAGCTCGAAAGGTTCCTACAGATCGCACATGGCCATACACTCCGGATACAAGCCATACGCGTGCGAATATTGCGATAAAAGATTCGGAGACAAACAGTACCTGACTCAGCACAGACGAGTGCACACGGGAGAGAAACCGTTCAAGTGCGATGAGTGCGGACAGTGTTTCAGCCAAAGGTCGTCGTTAAATCGACACAAAAGATATCACATGGGACTGAGACGATGA
- Protein Sequence
- MVMNVGCGRGRKSSENVIEMESASSSKYTCKVCFKQFSTAFKLNRHSVSHLKDRPHKCNICEKSFKRPQELKSHRKLHTEERRYKCEFCPATFYLPSRLRVHVNRHTATYRFNCETCKKGFHTTTEFKCHNNVHHGTGGHVCETCGKIFPHRAALNKHSQTHDPDFIAEKHKCDLCDKTFAHKSSLNIHSKSHAVGTNYICDICGQKLKSKATLSWHLMTHSGEKPSECETCGKRFAKKTNLMAHKLTHTGQKLHMCDKCGRSFSQRSSLTIHERYHTGSRPYVCDNCGKGFVSRSQMNSHIKSHHQTLETTVTPSKSKVNRYEFNHPDWNDLLGSGKEIIKDESKQILPTVRETVERFVLTNLDQKTGKKEKRKGKRQEKRKSDQVTCNACNLTFEDEELLDKHMAFHKVFRCTICNKDYQPRENYNRHMKNVHNEGGSLPRVTCHVCHKTLKNKYFLKTHMKIHAPDTDYKCPHCEYKNNNLFYMKIHINRHTKQPSYQCEICGENFYEKTILQTHVQVKHGRGFECEVCGRSYGTKQRQREHEKTHDPNYVHVNKHQCEECGQTYKYRAQLKKHILKHRGLDVKYSCSVCGKVVTTKKSFTNHMKIHTGEKSSVCDICGKAFTVEKYLVVHRRTHTGEKPYSCQICGKSFTQRVSLVIHNRYHTGERPYRCQVCNRGFVTNTLLSAHLKTHVSQQKRNKSTLDAAVLRKKLLSIARTNRLKRVGKVKKRKQEEKLPQKKLKTGDVESDNMSYSYFEPEIKIESGTTNAENATNNGQSSQDFMSDQMATVRCTLCGEMVSAANFDKHKFVEELYLAAMKCRICNISFKKKSTFRIHIYDQHKIHHCKLCPEVFSKRQHYRMHKELVHDLKKKPRVLCDLCNRSFASKQILKRHRNEVHFGQREPETKCPQCDYKSSNRSNMKVHIDKHNNTPAFVCDLCGKGCFTKTSLNDHTANAHGQGFKCEVCGKFYKNESSLKTHSKIHVPGFDPATLKQQCEECGEIFNHKSSLNKHLLKHRGLDKTFDCDVCGKKLSSKGSYRSHMAIHSGYKPYACEYCDKRFGDKQYLTQHRRVHTGEKPFKCDECGQCFSQRSSLNRHKRYHMGLRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -