Ccol012028.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- -
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000004.1:4364371-4367517[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.6e-09 7.5e-06 25.5 0.0 4 45 38 78 35 78 0.95 2 2 1.8 3.7e+03 -2.4 0.0 11 23 151 164 151 164 0.87
Sequence Information
- Coding Sequence
- ATGACAGCTGCAGCAGATACTCCAGTGACGCCAACCTTGTCCCGCATGTTAGTGAGATTGACTGAAACCATGCCTCCCAATAAAAATGGAATGTGGAAGTACACAACTCAGCAAATGGCAGATGCTGTGAAAGACGTACAGCTCGGCACAGCAGTTTCCACAGCTGCAAAGCGCCATGGCGTTCCACGTATCACTCTGCTGTACAAGGTGAGAGGGAAAACTCCTCTTGAAAGAAGAATAGGGCGTTTCTCAGTGCTGTCAGAAAATGAAGAACAGATTTTGGTTCACTGGATCAAAACAGCATCAATGGCTGGCATTCCAGTCACCGCGACCCAGGTATGTGACAGTGTAAAAGAATTAGTTGAGAAGTTGGGGAGAGAAAATACCTTCAAAAACGGTCGGCCTGGCAAAAAGTGGTTGGCTGGATTTCTAAAACGAAACCCAACAGTATCTATTAGAACTGGCGAAAATGTAACAATTAGTAGAGCATCGTTAACAAAGGAACGGTTGTCGTCTTGGTATGATGAGGTGGAGACTTTTTTGAAGAATAAGGGTTTGATGGGCATTTTAGATGACCCCCAGAGGGTGTTCAATGGAGACGAGGCGGCCTTTTTTTTAAATCCCAAAGGGAATAAGGTTTTGGCACAGAAAGGTTCAAAAAACGTTTACCTCACTGCCAATTCAGATGAAAAGGAGTGGCTGACTGTTCTCGTAACAGCAAACGCGGCTGGTATGTTAGCACCACCACTGGTCGTTTTCAAGTATGAGAGGGTGCCTAGCTCCGTCGCTAATAGTGTGCCAGCTGGTTGGGGAATAGGACACTCTGAAAGTGGCTGGATGACTGGTGCTACGTTCTACGAGTTCATGGGCAATGTATTTTACCCATGGCTACTAAAAAATGACATCACATTGCCCATTATATTTTTCTTGGATGGACATGTTTCACATTTAACTTTACACTTGAGTGTTTTATGCCGGGAGAAAGGTATAATACTGATAGCATTGCCACCAAATGCAACACATGTGATTCAGCCGATGGATGTGGCTGTATTCCGCGCGCTTAAAGAAAAGTGGAAGACTACAGTTCACGAGTGGAGACTGCAAAATGCAGATAATCCTATTTTAAAGAAGCATCAATTTTGTAGTTTGCTTCAAAAGGTGCTTGAGGAGAAAATAACACCTTCTATTGTTGGTAATGGCTTCCGGAAGTGTGGTCTCCTGCCATGGAACCCTCAAGCGATTTCACTTGAGCACAACATAGAAAACCCCCCTGGACAAGAACACCCTCATCACAGCCCTCCCAATACCAAAGAACATTCCTCGGACAAAACGAGGTATCACACTTGTGTATCAGTGATTCGAGAAATAATTGGAGAAGAAAGATACAAAACATTTTGTGATTCATTGAACCCGAGCGAGGTTGCAGATTCCTCCTTGTATGAATTTTGGAAGGAAGTACAAAGACGCAAACAAATACATGGAAAACATAACAACAACAGCAACGAAGAATGTTTGCAAGATGAATATCCCAACAATGATGAGTTGGCGATTGAATCGGCTGATAACTTCCATGATGAATCCCGGGAGAATACTAGAAAAGTTTGTGCCACACCTATCCTAAATTTTGACTTTAAAAAGAAATTTAAAAATTAA
- Protein Sequence
- MTAAADTPVTPTLSRMLVRLTETMPPNKNGMWKYTTQQMADAVKDVQLGTAVSTAAKRHGVPRITLLYKVRGKTPLERRIGRFSVLSENEEQILVHWIKTASMAGIPVTATQVCDSVKELVEKLGRENTFKNGRPGKKWLAGFLKRNPTVSIRTGENVTISRASLTKERLSSWYDEVETFLKNKGLMGILDDPQRVFNGDEAAFFLNPKGNKVLAQKGSKNVYLTANSDEKEWLTVLVTANAAGMLAPPLVVFKYERVPSSVANSVPAGWGIGHSESGWMTGATFYEFMGNVFYPWLLKNDITLPIIFFLDGHVSHLTLHLSVLCREKGIILIALPPNATHVIQPMDVAVFRALKEKWKTTVHEWRLQNADNPILKKHQFCSLLQKVLEEKITPSIVGNGFRKCGLLPWNPQAISLEHNIENPPGQEHPHHSPPNTKEHSSDKTRYHTCVSVIREIIGEERYKTFCDSLNPSEVADSSLYEFWKEVQRRKQIHGKHNNNSNEECLQDEYPNNDELAIESADNFHDESRENTRKVCATPILNFDFKKKFKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -