Ccol016123.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- bab1
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000002.1:17055581-17067434[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-14 3.1e-11 42.7 0.1 2 45 377 420 376 420 0.95
Sequence Information
- Coding Sequence
- ATGGGAAGTACTCAACAATACTGTCTCAGGTGGAACAATCACCGTTCTAACCTTCTGACAGTTTTTGATCAGCTGCTGCAGAATGAGGCATTCACAGACGTAACTTTGGCCTGCGACGGCGGAACATCCGTGAAATGTCACAAAATGGTTCTCGCCGCGTGTAGCCCTTACTTCCAGTGTCTCTTTACCGAGTTGCCCTGTAGACATCCGGTCGTCGTCTTGAAAGATGTCAAATACAACGATATGAAAGCCATACTTGAGTACATGTATCGTGGAGAAGTAAACGTGGCTCACGATCAGCTGGGCGCTTTGCTCAAAGTCGCCGAAGCTTTGAAGGTGAAGGGTTTAGTCGAAGAAAATGGACGAGAAGCTAACAGCTCCAACAGTCTGCCGCTATCGACGACGAAAACGGAACAGGATAGAAATGACGCGAGTTCTCCGCCGCGGATAGGAACCTCGAGCACATCCATATCGAGCGTACCTCATTCGAGCGTGAGTCCTCCTCATTCGACTCACGGAAACGGTGAAAACTGCTTACCCAATTCATACAGTAAGAGTCCTTACCTGTACGGGAAAAGCCCCGTCATGGACAGGAGTGGTAGAATGAATTTGCCGATGTGGGCGGTACCTTTACCTCATCATCCATCTCCGGTACCTCCGCCGAGTCATCCCCACGCGGCTGCTACCGCTGCTGCTGCTATGCTTTCTTCTTGCTATGAAGCTGCCAGTTCGGACATGTCACCGCTCAAACGGAAGAAGTTGCAAAGTTTGCTCATGTCGAGGGACACTCCGATACTGAGAACTGTTCTGGGTCAAGGCCAGGTTGACTCCTCACAACCGGTTCCTCTCGTGTGTCATCCGGACACCCAGGAACGAATCCACTCCAACGGATCGGCACAAGATAGCGAAAGGAATGTCAAGGCAGAACCTTCGGAAGATGCTCCGAGTCCCTACACGGATATTTCGATGATGGACGACGAAACGAGCCCTAGTGATAAGAATATAAAATCCGTTCCGACCTCTTCTCCACAGGCGGCATTTCCCTCGGACATGCGTAACGTATCATCAGGAATCGCAACGTACGTGCCACAGCAAAAACCCGAATGGAAACGCTACAAACAATACACGAGAAACGATATACAGAGTGCAATTGATGCTGTCCGAGCGGGAATGAGCGCTCTGCAAGCGGCCAGGAAATATGGTGTCCCATCCAGGACCCTTTATGACAAAGTCAAGAAGCTTGGTATAACGACGAGTAGGCCATTCAAAAGAGGTACCAATGGCGGTAATTCAAACTCGTTCCCATACAACATGAGCGCTGGATTAGGTCACGTTTTTAGCGGTGTCTCCGAAAATGAAGAGCCCATGCCACCCCATCCTGGTGGCGCTCTCCTGGAACCCATGTTTCTCCAACATGCACTTGAACGAAGCAAAGGCGAATTCACGGAACGTGAAGCGTTGATGGCACTCGCCTCGGCTCACGCTCAAGCATCCGCTGGATCAGGCTCTGGATCAAGGCATTCGGGTAGCAACAACAATTCCTCACCGGAAAACAACGGAAGATCGCCCAGTCCGAACATGTTGTCGATGAAGTATATGAGACACGGAAGTATGACCCCATCGCCGAACAACGATGATCGAATGGACGACGAGGACCAGGTTGAGGATTTGTCTATAACGCGAAAGGAAATTCATCCGCCACCGACGGGAAGCGTTATCGTGCCACCGATGAGCTTGCTTGCGAAAAAGGCGGAAGAATTGGCGGAACTCTCGAGAGAAAGAGACTTGACAAGGATGAGAGAAAGAGAAGAACGGGAAAACGAAATGGAAAGAGAGCGAGAACGGGACCGAGAGCGGGAGAGGGAAAGGGAAAGAGAGAGAGAACGCGTCAGAGAAATCAAAAGAGAAGCCGAACGAGAGATGGACCGAGAGCGACAGGAGGACATGGAAAACCATTCTTCGGACGATTCGAGAAGAGATTAG
- Protein Sequence
- MGSTQQYCLRWNNHRSNLLTVFDQLLQNEAFTDVTLACDGGTSVKCHKMVLAACSPYFQCLFTELPCRHPVVVLKDVKYNDMKAILEYMYRGEVNVAHDQLGALLKVAEALKVKGLVEENGREANSSNSLPLSTTKTEQDRNDASSPPRIGTSSTSISSVPHSSVSPPHSTHGNGENCLPNSYSKSPYLYGKSPVMDRSGRMNLPMWAVPLPHHPSPVPPPSHPHAAATAAAAMLSSCYEAASSDMSPLKRKKLQSLLMSRDTPILRTVLGQGQVDSSQPVPLVCHPDTQERIHSNGSAQDSERNVKAEPSEDAPSPYTDISMMDDETSPSDKNIKSVPTSSPQAAFPSDMRNVSSGIATYVPQQKPEWKRYKQYTRNDIQSAIDAVRAGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGTNGGNSNSFPYNMSAGLGHVFSGVSENEEPMPPHPGGALLEPMFLQHALERSKGEFTEREALMALASAHAQASAGSGSGSRHSGSNNNSSPENNGRSPSPNMLSMKYMRHGSMTPSPNNDDRMDDEDQVEDLSITRKEIHPPPTGSVIVPPMSLLAKKAEELAELSRERDLTRMREREERENEMERERERDRERERERERERERVREIKREAEREMDRERQEDMENHSSDDSRRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01308777;
- 90% Identity
- iTF_00362617;
- 80% Identity
- iTF_00362617;