Ccol010239.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- retn
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000001.1:13933907-13971758[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.4e-22 1.8e-18 66.6 0.0 13 89 1 75 1 75 0.96 2 2 0.92 2.2e+03 -1.0 0.0 25 38 212 225 168 243 0.74
Sequence Information
- Coding Sequence
- ATGCAAAAACGAGGAACCCCTATAAACCGACTGCCAATAATGGCGAAGTCAGTATTAGATCTCTACGAATTATACAATCTGGTCATTGCTAGGGGAGGATTAGTCGACGTAATCAATAAGAAACTATGGCAAGAAATAATCAAAGGGTTGCATTTGCCGTCGAGCATAACGTCAGCAGCGTTCACACTCAGAACACAATATATGAAGTACCTGTATCCATATGAGTGCGAGAAACGAAGACTCAGTACTCCGTCAGAACTCCAAGCTGCCATCGACGGAAACAGAAGAGAAGGACGGCGGAGTAGTTACGGAACGTATCCAGAGCTCATGCAAAGGTCTCCGGGGCCCAACCATCCCTCGCAAATGAGCCCACTTAGCTTAGCTAATCAATTAAGGCCTCAAATTAACGGGAATGGACATTTGCATCACCCCGTACTTCATCCCTCACTAGGACAGCCACCTCTACCAGCCGGACCGATTCCAGGATTAGCTCCGTCAGAATTCGAAGCAAGGATGGTAGAATACGTAAAGCTGTTGAACAAAGAGTTACGAACTTCGACGACGACCCCTCCCTCGATACGACAGGGATCAAATTCCCCTCCTTCGTCTACATCTCCCAGGGAAGCGTTAAGTGCAATCGAAATGTCTAGGCTTACCCTCTGGAATCTGTATAACAATAATCATCACACTCCATCGACGCCGGAACCGCAAAAAGAAGCACTGGACCTGGGAGTCAAAGAACAACAGCAGCAACAAACGCAGCAAACACAAAGACAGTCATCCCCACAAGTTAAAAGAGAACCTCAAGAAGCGTTGACAAACGGTCCTCCAGCAAAGAAGCTGCTCATGGATGAGGAGGAGGATGAAGATGGAATCAAAATCGGGGGGAAAACGCACATAAAAATAACCAACAGTAAAGGAGAGGGCAAAGGACAGGAAAATTCTCTCTTCGTTAGCATGGACATAAACGGGATCATGTACCAGGGGGTTTTGTTCGCACAGAACACGACGAGAAGTCGATCTTCGTAG
- Protein Sequence
- MQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPSELQAAIDGNRREGRRSSYGTYPELMQRSPGPNHPSQMSPLSLANQLRPQINGNGHLHHPVLHPSLGQPPLPAGPIPGLAPSEFEARMVEYVKLLNKELRTSTTTPPSIRQGSNSPPSSTSPREALSAIEMSRLTLWNLYNNNHHTPSTPEPQKEALDLGVKEQQQQQTQQTQRQSSPQVKREPQEALTNGPPAKKLLMDEEEDEDGIKIGGKTHIKITNSKGEGKGQENSLFVSMDINGIMYQGVLFAQNTTRSRSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -