Ccol011467.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- Kdm5
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000004.1:8950438-8955081[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.2e-24 1.5e-20 73.3 0.0 2 89 103 186 102 186 0.95 2 2 4.2 1e+04 -3.1 0.0 11 42 911 941 905 954 0.74
Sequence Information
- Coding Sequence
- ATGGTATATAAATCAGATAAGGCACCGACAAAAAGTCCAAATAAAGGACTTGGATTGTCCCCTCTAGTGACAGAAGAATTTCATTTTGTTGTTCCACCTGAAGCTCCTGTTTATACTCCTCAAAACAGTGAGTTTGATGATCCATTAGCTTACATTGCTAAAATAAGACCTGAAGCAGAAAAATATGGGATTTGTAAAATAAAACCTCCTCCAGATTGGCAACCGCCATTTGCTGTTGATGTTGATAGGTTCAAGTTTACTCCTAGAATTCAAAGATTAAATGAATTAGAAGCCAAAACAAGAATTAAGTTGAATTTCTTGGATCAGATAGCTAAATTTTGGGAACTACAAGGTAGTTCATTGAAAATACCTATGGTAGAAAGAAGAGCACTAGATTTATATGCTCTTCATAGATTTGTTGAAGAAGAAGGGGGATTTTATGGAACAACAACTAACAGGAAATGGACAAAAATTGCAAATAGAATGGGCTTTCCTACTGGAAGAGATTTAGGAAGTGTTTTAAAACATCACTATGAAAGAATTCTTCATCCTTTTGACATATTCAAACAAGGGAAAACAATTTCACAGATTAAATCTGAAAAAGAAGACACCACAGAGTGTGATGCTGGTGTTTCTGACTCGAAGAAAAAAGAGAAGGATTATAAACCACATGGCATAGTGTCAAGGCAGGCCATAAGACCTCCTGTTGAAAAATATGCTAGAAGATCAAAGAGATGCTTTCAAAATAAGTTAAAGCAAGGTGAGACAACTGAAACAAAACCAAAATGCAGGAAGAAAGATGTGAAGAAAGTCTCCAATTATGAGTATGATCCTTTAGCTAAATATATTTGTCACAACTGTGAGAGAGGAGATGCAGAAGAAAATATGTTGTTGTGTGATGGTTGTGATGATTCTTATCACACATTTTGCTTACTTCCGCCGCTTACTGAGGTTCCCAAAGGTGACTGGAGATGTCCTAAATGCGTTGCAGCTGAAGTTTCTAAACCAATGGAAGCTTTTGGTTTTGAACAAGCAAGGAGAGAATATACTTTACAACAGTTCGGTGAAATGGCAGATCAATTTAAATCAGATTATTTCAACATGCCTGTTCATATGGTTCCATCAAGTTTAATTGAAAAAGAATTTTGGAGAATTGTCAGTTCCATAGATGAAGATGTGACTGTTGAATATGGCGCCGATCTTCACACAATGGATCATGGATCTGGTTTTCCAACTAAAATCAGTGTTGAAGAAATGGAAACATGCGAAATAGAGTATGCGAGATCTCGATGGAATTTAAATAATCTTCCTTGTTTAGAAAATTCTGTGTTGGGACACATAAATGCTGACATATCAGGCATGAAGATTCCGTGGATGTACGTGGGAATGTGTTTTGCAACATTTTGTTGGCACAATGAGGACCATTGGTCTTATTCCATCAATTACTTGCACTGGGGCGAGGCGAAGACGTGGTATGGTGTTCCGGGGGAAAAAGCCGAAGATTTTGAACTCGCGATGAAGAAGGCTGCACCGGAATTATTTCAAAGTCAACCTGATTTACTTCATCAACTTGTTACCATAATGAACCCAAATATTTTAATGGATTCCGGAGTACCTGTTTACAGGACGGATCAAGAAGCTGGAGAGTTTGTCATTACATTTCCACGAGCGTATCACGCAGGTTTCAATCAAGGGTACAACTTTGCCGAAGCTGTAAATTTTGCTCCAGCTGATTGGTTGGCCAAAGGGCGAGAGTGCATTGACCACTACTCGATGCTGCGAAGGTATTGTGTTTTCTCTCACGATGAGTTGGTGTGTAAAATGGCAAGCTGTCCAAATACCTTGGATTTAACCGTAGCTACCGCAACGTTTCAGGACATGACAATTATGGTGCAGACTGAAAAGAAATTGAGGAAAAGTTTATTAGAATGGGGAGTGACGGAAGCAGAACGAGAAGCGTTTGAATTGCTTCCAGATGATGAACGCCAGTGTGAGGTTTGTAAAACTACCTGCTTTCTGTCAGCTGTAACCTGTAATTGCAGTAATGAACAATTGGTTTGTTTACGTCATTGCACCGAGTTATGCAAGTGCCCACCTGAAAAACATACTCTGAGGTATAGATATACCCTAGACGAATTGCCAGTCATGCTTGAAAAACTTAAACTGAGAGTGGAATGTTACGATACCTGGTGTGAAAATGTGACAAATGCCTTGGACAGAACCAAAGAAAAAACTCTAACTTTTTCTGAGTTGAAGGCATTACTAAATACGGCTTTTGATAAAAAATTTCCAAGCACCGATTTGTTAAATGATTTGAAAACAGCTGTTGAAGAAGCAGAGAAATGTGCAACCGTGGCACAACAGATAGCCAATAAGAAATTAAGAACTCGGACGAGGCAGACACCGGAATCTAAATATAAATTAACGATGGAGGAATTAACCTTATTCTGCGAGGAAATAGAAAATCTCTGTTGCGTTCTTAAGGAAAGTGAAACAATAAAAGAACTTCTAGAAAAGGTTAAGGATTTTCAAAACGAAGCCAAAAAATTGTTGGACTTGGAAACTGCTGATTCTGCGGCTTTGGAAAAATGTATTGATACAGGAATCATGCTGGATGTAGAATTACCAGAATTAGTCGTTTTAAAGCACAATCTTCAGAGGATCACATGGTTAGAAGAAGTATCTTACACCAAAGAAGATGAAGATGAAGTTACTTTGGATGTATTGAGAAGTTTATTAGATGCTGGTATTGAATTACCACCGCATCCTCTTATCGAAAAGGAAATGGCGAGTTTGCAACAACTCTTAATGAACGTAGAAAAATGGGAGGAGAAGGCTAAAGAGTGTTTGAGTTCTAAACAAAGACAGCCTATATCAGCTCTTGAAAAACTTTTGAACGAAGGAGAGGAATTACCGGCTTTCCTTCCTAGTGAAAGTAATTTAAGGGATGCACTTAAAAAAGCTAAAGATTGGATAGCAAAGGTGGAAGCAATCGAAAGCGCTCCTGATTTTCCATATCTGGATACTTTGGAAAACTTAGTAAACAAAGGAAGGCATATTCCCGTCAAATTGGAAGTGCTGTCCGTTTTGAATCTAAATTGGAGAACGCAAAATCGTGGAAGGAGCGAACGGCACGTACATTTCTACGTAAAAATTCCAAATATACTTTAA
- Protein Sequence
- MVYKSDKAPTKSPNKGLGLSPLVTEEFHFVVPPEAPVYTPQNSEFDDPLAYIAKIRPEAEKYGICKIKPPPDWQPPFAVDVDRFKFTPRIQRLNELEAKTRIKLNFLDQIAKFWELQGSSLKIPMVERRALDLYALHRFVEEEGGFYGTTTNRKWTKIANRMGFPTGRDLGSVLKHHYERILHPFDIFKQGKTISQIKSEKEDTTECDAGVSDSKKKEKDYKPHGIVSRQAIRPPVEKYARRSKRCFQNKLKQGETTETKPKCRKKDVKKVSNYEYDPLAKYICHNCERGDAEENMLLCDGCDDSYHTFCLLPPLTEVPKGDWRCPKCVAAEVSKPMEAFGFEQARREYTLQQFGEMADQFKSDYFNMPVHMVPSSLIEKEFWRIVSSIDEDVTVEYGADLHTMDHGSGFPTKISVEEMETCEIEYARSRWNLNNLPCLENSVLGHINADISGMKIPWMYVGMCFATFCWHNEDHWSYSINYLHWGEAKTWYGVPGEKAEDFELAMKKAAPELFQSQPDLLHQLVTIMNPNILMDSGVPVYRTDQEAGEFVITFPRAYHAGFNQGYNFAEAVNFAPADWLAKGRECIDHYSMLRRYCVFSHDELVCKMASCPNTLDLTVATATFQDMTIMVQTEKKLRKSLLEWGVTEAEREAFELLPDDERQCEVCKTTCFLSAVTCNCSNEQLVCLRHCTELCKCPPEKHTLRYRYTLDELPVMLEKLKLRVECYDTWCENVTNALDRTKEKTLTFSELKALLNTAFDKKFPSTDLLNDLKTAVEEAEKCATVAQQIANKKLRTRTRQTPESKYKLTMEELTLFCEEIENLCCVLKESETIKELLEKVKDFQNEAKKLLDLETADSAALEKCIDTGIMLDVELPELVVLKHNLQRITWLEEVSYTKEDEDEVTLDVLRSLLDAGIELPPHPLIEKEMASLQQLLMNVEKWEEKAKECLSSKQRQPISALEKLLNEGEELPAFLPSESNLRDALKKAKDWIAKVEAIESAPDFPYLDTLENLVNKGRHIPVKLEVLSVLNLNWRTQNRGRSERHVHFYVKIPNIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -