Ccol003380.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- Kdm5
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000006.1:7808316-7811282[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-26 3.4e-23 81.8 0.0 2 89 98 181 97 181 0.95 2 2 7 1.7e+04 -4.2 0.0 14 36 200 222 196 223 0.73
Sequence Information
- Coding Sequence
- ATGGCCGTCCGAGTATCAACACCGAGCTTTCGGAAGTCAATTGATTTAAAAGCTGCTGAAAGCTTTAAGTTTACACCTCCTCCCGAAGCTCCGGTATTTGAACCGACTGAAGAAGAATTTAAGGATCCACTAAAGTACATCTACAAAATTAAAGGTGCTGGTGAAGCAGCTGGAATATGCAAAATCAAACCACCACCAGATTGGCAGCCTCCTTTTGCAGTTGATGTAGACAAATTTAAATTTGTTCCAAGAATTCAAAGGTTAAATGAATTGGAAGCTTGTACTAGGGTCAAGCTTAATTTCTTAGACCAAATTGCCAAATTTTGGCAGTTGCAAGGAATCCCACTTAAAATTCCAATAATTGAAAAGAAAACACTTGATCTATACCACTTGCACAATAGTGTACATAAAAATGGAGGAATGGCAAGTGTTAATAAGGAAAAGAAATGGCCGAAAATTTCGATTGCAATGGGATTTGATCCTGCTAAAAATATTGGTCAGCTTTTAAAAACCCACTATGAGAGAATCCTTCATCCTTTTGATATGTTTCAAAAAACAAAATTACAAAACAAATTAAAAGGAAAAAATAACACAACAGAGCAACAAAACACAGCCATTAAAAAGGAAGTGAAAAGTGAAAAGAGAACAGTAGAAGTTATTGACTTATCAGATGAAGATGACAGACCAGACAAAAAATTGTGCTCGGAAGATTCCAAAGAAAATGTTAAGAAGGAAATAGCCGAAATGGAAGGGAATAATTACACTCCACATGGTATTATATCAAGGCAAGCTATAAAACCACCTTCGGGGAAATATAGTCGACGATCGGCAAACTGTTTTAATCATCAAGATCAAAAAGAACAGAATGGAGGAGGAGAAAGCACAACATCAAAGCCGGAAGAGAATATTAAAAAAAATAAAGAACTACAGAGGTTAGCTTTCTTTGGAGCTGGCCCTAAACTGCCCGGTTATGATCCAAATATGAACTTCAACGAAAGCAAAACAAGAGGAAAAGGCGGAGATAAAGAAGAAAGTATTTTATTGTGCGATGGATGCGACGACAGCTATCACATTCAATGTCTCGTTCCGCCATTGTCACAAGTACCTGAAGGGGATTGGAGATGTCCTCAGTGTGTTGCTCTAGAAGTTAGCAAACCTTGCGAAGCCTTTGGTTTTGAACAGGCCGAGCGTGAATACACTCTCCAACAGTTTGGGGAAATGGCCGATCAATTTAAACAAGATTATTTCAATATGGCAGTTCATAGAGTTCCCACGTCGCTCGTGGAAAAAGAATTTTGGAGAATCGTCAGCAGTATTGATGAAGACGTGACGGTTGAGTATGGGGCCGATCTTCACACAATGGATCATGGATCTGGTTTTCCTACTATAATCACCGACGATGAAATGTTAACGTGCGAACTGGAATACGCCCAGTCTCCTTGGAACTTGAACAAACTACCCGTTTTAGAAGGTTCTGTTCTTCAGTATATTGATTCAGATATTTCTGGAATGAAGGTGCCCTGGATGTACGTTGGAATGTGTTTTGCTACCTTCTGCTGGCACAATGAGGACCATTGGAATTATTCAATAAACTATCTTCACTGGGGAGAACCAAAAACTTGGTATGGCGTACCAGGAATGAAAGCTGAATTATTCGAAGAAACAATGAGAAAAGTCGCACCAGAATTATTTAACTCTCAACCTGATCTCTTGCATCAACTGGTCACCATAATGAATCCTAATCTTTTGATGGCTAACGGAGTGCCTGTTGTAAGGACTGATCAACAAGCCGGAGAATTCGTGGTGACGTTTCCTAGGGCTTACCACGCCGGGTTCAATCAGGGATATAACTTCGCGGAAGCGGTTAATTTCGCACCTGCCGACTGGTTGAAAATGGGCCGCGAGTGTGTTGCCCATTATTCTTCGCTTCATAGGTTTTGTGTTTTTTTCCCACGACGAGTTAGTTTGTAA
- Protein Sequence
- MAVRVSTPSFRKSIDLKAAESFKFTPPPEAPVFEPTEEEFKDPLKYIYKIKGAGEAAGICKIKPPPDWQPPFAVDVDKFKFVPRIQRLNELEACTRVKLNFLDQIAKFWQLQGIPLKIPIIEKKTLDLYHLHNSVHKNGGMASVNKEKKWPKISIAMGFDPAKNIGQLLKTHYERILHPFDMFQKTKLQNKLKGKNNTTEQQNTAIKKEVKSEKRTVEVIDLSDEDDRPDKKLCSEDSKENVKKEIAEMEGNNYTPHGIISRQAIKPPSGKYSRRSANCFNHQDQKEQNGGGESTTSKPEENIKKNKELQRLAFFGAGPKLPGYDPNMNFNESKTRGKGGDKEESILLCDGCDDSYHIQCLVPPLSQVPEGDWRCPQCVALEVSKPCEAFGFEQAEREYTLQQFGEMADQFKQDYFNMAVHRVPTSLVEKEFWRIVSSIDEDVTVEYGADLHTMDHGSGFPTIITDDEMLTCELEYAQSPWNLNKLPVLEGSVLQYIDSDISGMKVPWMYVGMCFATFCWHNEDHWNYSINYLHWGEPKTWYGVPGMKAELFEETMRKVAPELFNSQPDLLHQLVTIMNPNLLMANGVPVVRTDQQAGEFVVTFPRAYHAGFNQGYNFAEAVNFAPADWLKMGRECVAHYSSLHRFCVFFPRRVSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01250862;
- 90% Identity
- -
- 80% Identity
- -