Ccol013256.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Columbicola columbae
Gene Symbol
Arid4b
Assembly
GCA_016920875.1
Location
JADMLL010000008.1:1120361-1126733[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.7e-28 4e-25 87.9 0.1 1 89 298 383 298 383 0.95

Sequence Information

Coding Sequence
ATGTTGACGGACGAACCTCCTTATTTATCTGTTGGAACAGAAGTTAGTGCAAAATATAAAGGGGCCTTTTGTGAGGCAAAAGTTAGAAAAGTAGATAAAACAGTCAAATGTAAAGTATCATTCAAACTAGGTTGTGGAACATATACAGTATTGGATAGTTCAATTAAGGGAACTTTGAGAGTAGGGGCGTCAGTGGAAGCAAAACATCCTGAAAAGAAAGAATTTTTTGAGGCCACCATCACAAAAATCCAAGATTGCAGTCAATATACAGTTGTTTTTGATGATGGTGATATCACTACATTACGAAGATCTGCCTTGTGTCTGAAAAGTGGAAGACATTTTGCAGAAAGTGAAACTCTAGATCAGCTTCCGTTGACACATCCAGAACATTTTAGTAATCCAGTTGTCGGTGCAGGTGGACGACGGGGAAGAAGACGGCTTTTAGATGATAGCAGTGGGGATGAAGAAAATACTAGGAAGGGGAAAACTAAGGAAGAGAAAGAAGCAGATATTGGAAAAGTAGTTTGCGTCGAGCTTGGAGATAAAAAGAAAGTAAAAGACAATTGGTTTCCTGGTTTAGTTGTGTCTCCCAATGCACAGGACACTGTTCAAATTCGAGTCAAGGATGAGTATTTAATTAGATCCTTCAGTGATGGCAGATATTATACAGTTCCTAAAAAGGAAGCATCTGAATTTACTAGAGAAATTGGTATAAAGGTAGACAACAATACCCTCAAAACAGCTGTTGAAAAAGCACTGCGTTTTATAGATAAAGATGAATTACCACCACATTGGGATAGGGAATTATTATTTGGACTTGTTGATAGTGATATTAATAGTGATTCTGATGAGGGCTTAGACTCTGAGAGTTCCGACGACGAACCCAGGGAAGAAAAGGATCATTTCGTTGCTCAACTATATAAATTTATGGATGACAGGGGTACTCCCATAAACAATTGTCCTTCGATAGGTGGGAAAGACTTGGATTTGTATAAATTGTTCAATGTAGTTCACAAGCTGAACGGTTACAATCGCGTCACCAATAGGAATCAGTGGAAAATTGTGTCAACTAAACTCGGTTTGGGAATCACAGCGAGTATCATCACTCAGGTAAAGCACGCTTACAAAAAATATCTTCACAGCTTTGAAGATTTTTATCGGAAACTCGGATGCACCATGGTCAGTCATCCAAGAAGCAATAGAGCGAGAAATAAAAGCGGACGAAGTTTGATTAGAGACCGAGACAGGACTACTCCATCGAATCTTAAGGCTAAACTTGATAGTTCTCCTTTCGAAAATACCAAATCAAATTCAAAGTCTGATGAAAATGCCGAAAAGGAGGGAGGATCTGATGTGAGAAGTAAAGAAGAGGTGACGGAGAAAAAGGAGGAGAAACAAAAAATTAAAGAGGAGGAGGTAGAGAAAAATGCCAAAAACAAAAACAGTAAAAAAGACATCGAAATAGAAGAGGTGTCGGAGAGCGAGGATAGCGTAAGTGTTTCTGAAGAAGCTTACTCAATGAGCAGACCCACCTCAAGCTTGAGAAAGAAATTTCCCACCTTGAAAGCGTCTCCGGTCGTTGTCCGAGAAAAACGAAAAGCAGACAGTTCGCCGGATGGAAGGAAATGTAAAAGAACTCGGTTGTTAAAATCGAGGTCAAGCAGTGGATCTGATGTGAAAACTACCAGCGACAATGAAGATGATTCCAAGGGCAAAGAATTTTCTTATCAGAGAAACACGACGAGGTCGAGATCGAAAGAAGATGTCAAAACGAAGAAGGAGACTGAAAAAGAAAAGAAATTGAAGTCTGCAGCAAATAACAATTCAGAAAATCAGAAGAAAATGTTGGCGGTGAAGGCGAAGAGGAACGAAAACGAGGAGCCTCAGAAAAAGGGAAGGAAAAGACGAAACACAGATACCGGTGGCAAATCTCCGAATCCAGCTGAAGAAGATCTAAATTTACCTTGCTTGCCGTCGTACAAGTCGGTTTTTACTGGGGACGTGTTAAAAATTTATTATGGGGCTCCGGGTGAACCCAAGGTAATTTACGAAGCCAAGGTTGTGGACATAAAAGAAAACGAATCTGGGGAAACCCTGTACCTAGTGCATTACGCGGGCTGGAACTCTCGTTATGACGAATGGGTTAAGAGGAACAAAATCGCTGATAACCTTAACTGGACTCCAGCTAGAGGGAAAGTGATTCCTGTTGCAAAGCAAAATTCCAAGTCCTCTGCTCAGAAAAGAAAACCCTCGTCGGGAAAAAACGAGCAGTCAGGAGGACCGGGAACGAGATCGACGACTCCTTTATCCGTTACCTCAACCTCAAGTAGAAACAAATCTCCGGCAACTTCCGTACCATCTGGTGGGAAAAGAGTTACCAGAAATATGGGAGACGTCAAACCGCCCAAGCGAACGCGAAGAGTTTCCGGTCATACTGATTTATCAGTGGATTCGGAAAGCGATAGCGATGCAGGTGAATCGGTGTCTGATAACGAAGGAAACAAAAAAGCAGCGTCCAATACAGGAAAGGAGGAAACTAGCCCCAAGACTGCATGCCCGAAGAAACTAGCGAAAAAACCAATGGCTAAAAAGAAAGTAGTTAAGAAGATGGTTGAGGAAAAGGCGGGAGAAAGCAACGAAGAGGAAACGGGGAAATATAAGCGGACTAAGAAGGGAGGAGTGGTAACAAAGGAGAAAGAAACAGAAGAAAAGAAATCGGTGACTGAAGAAAAATCGGAGAGCGTGAAAGAAGTTGACGAGCCGAAGGGGAGAGACTTCGACCTGAACGAAATTCGATCCGAATTGAAAGGAATCGACAAGGCCGTCAAAATGAACAGTGAACTCACGCTCATCGAGTCTTCTGAAGAGAGTGGAAAGTCTGCGACGGAAGAGAAGGGGGTGGTAACAATTGAAGACCCGGTAGAAGTACCACCGGAACCTCCGAAAGAGGAAAAGATAATGGTTAAACCAGAGGAAAAATCTCCCGAGAAAAAAGAGGTGAAAGACGATATATACGAATTCAAAGAACCTGAACCGTTTGAGTACCAAGAGGTTTTGAGGCCGATAAACCGAATGTTTGAAGAAGGAGATCGATCGCCGGACAAAACGGTGAAGAAACCTATTTTGCTCACGGAGAAAAAGGAAGTTTGTAAATTCGAAGTTGACGTTAAAAGCCGGTTTAGAAAAACTATCGGGAAAAAGATGAAAGAAGTTACAAGTGCGGAACTGAAGAAGGAATCGCCCTCAAAAAGTGAGAAACCGGAAGTGTTGCCGAAGGTAGAGGGTTTCCTGACCAGCGAATTCCACGCCAAACCGTCTGAAAAAGAAATTCCTATCTTGAAGGTCGAGGTAGAAGTTCAAAAATCTATGTCTCCCGAACCTGTACGTTTGTTTCCTCCGGTCCAAGAGGAGCAACAGCCCGAGAAAAAGGTGGAAGTCACTCCCGAGAAAGAACAAATTCCCAAGCCTCAGTTGGAAGTAGAAACATGCAAATCACCTCAAACGTCGAAGCTGTCGCCGGAACCCCCGAGTCTCACTCCGGTGACGAACAACGTTTTTGCAAACAATCGCCCTCCTACCAGTCCTCTTTTGACTCTCATCAACGAAGACTCGAAGCAAAACGAGCTGAAGAAAGGTGAAAATGGTCCGGAGGAGGAAGACGATCCCATCAGCGCTGCCATTCAGCGAGTAATAGCGCAGTCATCAATGGACGACGATAGTGACGACATGGACTTATTCGCAGTTTCGTCATCAAACGTAGCCGCCGGCACGACCGTCACAGCGACGGTAACGGCTGCAGTCGCTGTCACGACCAGCACCGTCGTGTCTACCGCAGCCGTCACAATTACCACTACCACGGCTTCTACCGCCCCCCGCCCCTCCTCCAACCGCTCTTACTGCGCCGGAAGAAGTGCCCGACCTTCCCAAACCCAGTCAATTGACGACTAA
Protein Sequence
MLTDEPPYLSVGTEVSAKYKGAFCEAKVRKVDKTVKCKVSFKLGCGTYTVLDSSIKGTLRVGASVEAKHPEKKEFFEATITKIQDCSQYTVVFDDGDITTLRRSALCLKSGRHFAESETLDQLPLTHPEHFSNPVVGAGGRRGRRRLLDDSSGDEENTRKGKTKEEKEADIGKVVCVELGDKKKVKDNWFPGLVVSPNAQDTVQIRVKDEYLIRSFSDGRYYTVPKKEASEFTREIGIKVDNNTLKTAVEKALRFIDKDELPPHWDRELLFGLVDSDINSDSDEGLDSESSDDEPREEKDHFVAQLYKFMDDRGTPINNCPSIGGKDLDLYKLFNVVHKLNGYNRVTNRNQWKIVSTKLGLGITASIITQVKHAYKKYLHSFEDFYRKLGCTMVSHPRSNRARNKSGRSLIRDRDRTTPSNLKAKLDSSPFENTKSNSKSDENAEKEGGSDVRSKEEVTEKKEEKQKIKEEEVEKNAKNKNSKKDIEIEEVSESEDSVSVSEEAYSMSRPTSSLRKKFPTLKASPVVVREKRKADSSPDGRKCKRTRLLKSRSSSGSDVKTTSDNEDDSKGKEFSYQRNTTRSRSKEDVKTKKETEKEKKLKSAANNNSENQKKMLAVKAKRNENEEPQKKGRKRRNTDTGGKSPNPAEEDLNLPCLPSYKSVFTGDVLKIYYGAPGEPKVIYEAKVVDIKENESGETLYLVHYAGWNSRYDEWVKRNKIADNLNWTPARGKVIPVAKQNSKSSAQKRKPSSGKNEQSGGPGTRSTTPLSVTSTSSRNKSPATSVPSGGKRVTRNMGDVKPPKRTRRVSGHTDLSVDSESDSDAGESVSDNEGNKKAASNTGKEETSPKTACPKKLAKKPMAKKKVVKKMVEEKAGESNEEETGKYKRTKKGGVVTKEKETEEKKSVTEEKSESVKEVDEPKGRDFDLNEIRSELKGIDKAVKMNSELTLIESSEESGKSATEEKGVVTIEDPVEVPPEPPKEEKIMVKPEEKSPEKKEVKDDIYEFKEPEPFEYQEVLRPINRMFEEGDRSPDKTVKKPILLTEKKEVCKFEVDVKSRFRKTIGKKMKEVTSAELKKESPSKSEKPEVLPKVEGFLTSEFHAKPSEKEIPILKVEVEVQKSMSPEPVRLFPPVQEEQQPEKKVEVTPEKEQIPKPQLEVETCKSPQTSKLSPEPPSLTPVTNNVFANNRPPTSPLLTLINEDSKQNELKKGENGPEEEDDPISAAIQRVIAQSSMDDDSDDMDLFAVSSSNVAAGTTVTATVTAAVAVTTSTVVSTAAVTITTTTASTAPRPSSNRSYCAGRSARPSQTQSIDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-