Cpec011472.1
Basic Information
- Insect
- Colostygia pectinataria
- Gene Symbol
- -
- Assembly
- GCA_951394395.1
- Location
- OX596361.1:8441646-8462166[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.034 1.9 9.5 3.9 1 23 354 377 354 377 0.94 2 11 0.34 20 6.3 0.8 1 23 381 403 381 403 0.97 3 11 0.00016 0.0092 16.8 2.6 1 23 408 431 408 431 0.97 4 11 0.022 1.2 10.1 0.0 1 23 435 458 435 458 0.93 5 11 3.4 1.9e+02 3.2 0.1 6 22 476 492 472 496 0.87 6 11 0.00018 0.01 16.6 0.2 3 23 506 526 504 526 0.95 7 11 0.046 2.7 9.0 0.3 1 23 548 571 548 571 0.94 8 11 0.0019 0.11 13.4 7.4 1 23 586 608 586 608 0.96 9 11 1.3 77 4.5 0.1 1 23 614 636 614 636 0.95 10 11 0.00029 0.017 16.0 1.7 2 23 642 663 642 663 0.97 11 11 0.00014 0.008 17.0 1.1 1 23 669 692 669 692 0.96
Sequence Information
- Coding Sequence
- ATGCCACTTTCTCTGAGAGACAGTTTCCTGGATCGTTTGGCTCCGCCAACTGTTCCACCTAGAGAATTGTTTACTCCCGTAGTAACAGCAACTGTGTCTACATGTCCCTACGGTCTTGGTGTTCCTTTTTCTCTACACGAGCTAAAAGGTGTTTTATCAGACACTAAAGATACATCCCCTGGTAAAGATGGCATACCGTATTCATTTTATTCGCATTTGGGCGATAACGCTTTGCAATATTTACTAGATCTTATAAATTCTGTCATGTTGACAGGTGTCATTCCTTCAACATGGAAAACTCAAATAGTGTTGCCATTTTTAAAACCTTCAAAAAATCCTGCTGATTCCATGTCCTATCGGCCCATAGCTTTGTCACCGGTCATTATCAAAATTGCGGAACATTTGGTCAAAAACAGAATAGAATGGTATGTTGAAAATCTGAATATTTTACCCAATAGTCAATATGGCTTTAGGAAAGAATTGATCAAACATGAAAATAAGACTGATGAGCTTGAAAACTACGAAGATGATGATAAAGAAGATATAAACACTGTACCAACCAATGGGAATCAAGAAAATGATATCAAAATAGATGAGCCTGGTAATAGGTGCtcggtagaaataaataatacatcagATAAATTAGATGACAAACCACTAATTGAAATGGCTGTGAAAGATTTAGGAGATGAAGTTAAACTTGAAGATGACTCAAATGAACAAGaaaatgatattatcaaagattCATCTGATACAGATATGATAAATACGTTTGTAAAGCAAGTGTCTGGTATAAgccaaaaaagtaaaaaagGCGCACAAGTTAGCAAAAAACAACAACGCCCTAGAAAGCCTATGAAGAACCACACGAAATACGAAAACGTGTTCGACATACAGGTGTTCGCTTCATATGAAGAGGCTAAGGCGGAATTGCAATTGAGGGTTAACTCGGAGCCCTATCTATCTGCGGCACACAAGTGCGAAGTATGCTACACGGTGTACAAGTGTGCTAAGATCCTGAAGTTCCATATGCGATGGCATGAACTATCAGCAGGTGATCACGAATGCGACATTTGTTTTATGAGGTTTGAAAACAGATTGGCCCTTACTAGACACAAAAACCATTCGCACTGGGGCAAGTTTACATGTAAAAACTGTCCAATGATGACATACATTAAAGGACCTATGTTAAAACACTACCAAACTCACGTTGGACTCACATTTCCATGCAAAATTTGCGATCAGTCTTTCAAAAGCATGTGTGCGTATAATACCCATCAGCGCGTGAGTCATAAAAGTAATTATGTGTGCGTGATATGCGCACGGACCTTCGTCACGGAGAAAGGGTTAGATGCGCACAAAATCTACGCTCACAAGACAAAATCGAAAGTGAGTAGCGACGACCCCTCGGCACACTGCGCGCCGTGCGGACTCACGTTCGCGAACGAGCAGGTCTACACCGTGCACATCATGCGTACAGATATTCACAAGGATCTGGCAAAAACTATCATCGCTTGCAGGGCGTGCGGCGAGCGATTCGAAGACAACAATGATCTGAAAGTGCACAGGCGCACGCATAACTTGAACTATAAATCAAAGTCAATCATACTTCTGAAAACGAAGCTTTCTGACAAAGACCCCTACAGGTGTCCtattTGTGGTGTGGTGGGCACGAGTCACCTGTGGGTATGCAGACACGTTATATCGGTGCACCCGGACGCGCCCTACGTGGAAGACTTGAAGAAACGGCGGCAGCACATGTGCGACACTTGTGGGAAGTGCTACACTAATATACATACGCTACGCGAGCACATGTTCCGACACAGCGGCGCGAGACTGTTCGCGTGCGCGTCGTGTCCCGCGCGCTTCCAGTCGCGCCTGCGCCTCGCGATACACCTCGAGCGACACCAGCCGCCGCGGCGCGAGTGCGCGCGCTGCGGGAAGAAGTTCTCCTCCGCCGCTAACCTCTACTGCCATATGaggATGCACATTCAAGACCGGCGGTACAAGTGCCACGTGTGCGACAAAGGGTTTCTGCACGCGTCCGCGCTGAAGGAACACGTGCGCGGCGTGCACAACAACGTGCGACGCGCGCGCAAGCGAGCTGAGCGCGAAGCTGTCACCCACGAGTCACCTTAG
- Protein Sequence
- MPLSLRDSFLDRLAPPTVPPRELFTPVVTATVSTCPYGLGVPFSLHELKGVLSDTKDTSPGKDGIPYSFYSHLGDNALQYLLDLINSVMLTGVIPSTWKTQIVLPFLKPSKNPADSMSYRPIALSPVIIKIAEHLVKNRIEWYVENLNILPNSQYGFRKELIKHENKTDELENYEDDDKEDINTVPTNGNQENDIKIDEPGNRCSVEINNTSDKLDDKPLIEMAVKDLGDEVKLEDDSNEQENDIIKDSSDTDMINTFVKQVSGISQKSKKGAQVSKKQQRPRKPMKNHTKYENVFDIQVFASYEEAKAELQLRVNSEPYLSAAHKCEVCYTVYKCAKILKFHMRWHELSAGDHECDICFMRFENRLALTRHKNHSHWGKFTCKNCPMMTYIKGPMLKHYQTHVGLTFPCKICDQSFKSMCAYNTHQRVSHKSNYVCVICARTFVTEKGLDAHKIYAHKTKSKVSSDDPSAHCAPCGLTFANEQVYTVHIMRTDIHKDLAKTIIACRACGERFEDNNDLKVHRRTHNLNYKSKSIILLKTKLSDKDPYRCPICGVVGTSHLWVCRHVISVHPDAPYVEDLKKRRQHMCDTCGKCYTNIHTLREHMFRHSGARLFACASCPARFQSRLRLAIHLERHQPPRRECARCGKKFSSAANLYCHMRMHIQDRRYKCHVCDKGFLHASALKEHVRGVHNNVRRARKRAEREAVTHESP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -